mRNA_Ecto-sp13_S_contig11704.1474.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11704.1474.1
Unique NamemRNA_Ecto-sp13_S_contig11704.1474.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11704.1474.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.070e-5
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 3 
Query:  225 MARTILRATSAHRKGSASPAAGKVVQAKAGKKKAVAKLRQKTEPAAPE 368
            MARTI+R TSAHRKGSASPAA K  +AKAGK KA AK   KT+P+APE
Sbjct:    1 MARTIIRPTSAHRKGSASPAAVKGSKAKAGKNKAAAK---KTKPSAPE 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11704.1474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN56_9PHAE3.070e-572.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11704contigEcto-sp13_S_contig11704:1139..3442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons4
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.367283-CDS-Ecto-sp13_S_contig11704:1138..12911681462616.367283-CDS-Ecto-sp13_S_contig11704:1138..1291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11704 1139..1291 -
1681462616.3865714-CDS-Ecto-sp13_S_contig11704:1791..18381681462616.3865714-CDS-Ecto-sp13_S_contig11704:1791..1838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11704 1792..1838 -
1681462616.3959575-CDS-Ecto-sp13_S_contig11704:2874..29381681462616.3959575-CDS-Ecto-sp13_S_contig11704:2874..2938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11704 2875..2938 -
1681462616.4051275-CDS-Ecto-sp13_S_contig11704:3098..32181681462616.4051275-CDS-Ecto-sp13_S_contig11704:3098..3218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11704 3099..3218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.413233-UTR-Ecto-sp13_S_contig11704:3218..34421681462616.413233-UTR-Ecto-sp13_S_contig11704:3218..3442Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11704 3219..3442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11704.1474.1prot_Ecto-sp13_S_contig11704.1474.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11704 1139..3218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11704.1474.1

>prot_Ecto-sp13_S_contig11704.1474.1 ID=prot_Ecto-sp13_S_contig11704.1474.1|Name=mRNA_Ecto-sp13_S_contig11704.1474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MARTILRATSAHRKGSASPAAGKVVQAKAGKKKAVAKLRQKTEPAAPEDD
EVEVIDDAAVRDNSDDSDYEAEDDSDNEGDSSEKSSAEDSSSDFETANKK
AKISRRLSSPPAPRSSATPNGTSKKHGS
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mRNA from alignment at Ecto-sp13_S_contig11704:1139..3442-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11704.1474.1 ID=mRNA_Ecto-sp13_S_contig11704.1474.1|Name=mRNA_Ecto-sp13_S_contig11704.1474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11704:1139..3442- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCACAACACAAGGACCACACCAAACAAAGCTGTCCGACATCCTCGCACG
CGCCAACCCCAGACGTTGAAAGAGGATACACTAGACCTGCCCTACAGAAG
CTTCGGACAAGAAGTGTTTGTGTGTTGTTTTTGATTGGCCACAGATTTGA
ATTCGAATCCCGCCGCTTCTCATCTGCGGTGACGCAGCTCCCTCCAGAGA
TCACACCAACAAAGAGCCCTGATCATGGCGAGAACAATATTGAGGGCAAC
TTCCGCTCACAGGAAGGGATCAGCTTCGCCTGCAGCTGGTAAAGTCGTCC
AAGCGAAAGCTGGAAAGAAGAAGGCTGTCGCCAAGTTACGCCAGGTTGGC
ATCATGACTTTTCAAATCTCCAATGTTTGGTCTAGACCACATGTGGGTGA
TCGATGTGTGCTTCATTTGGAGAGGACGGCCAGTCTCGCGAACGCGTGCA
GACTTACGTGAACTGCCTTCGCCTTTCGTTCTGTGCATGTTGCGTGCCAA
GCAGAAGACGGAGCCTGCAGCTCCAGAGGATGACGAGGTGGAGGTCATCG
ATGATGCGGCTGTCAGAGGTGATTTTTTTTTGCAAATTGGCGCCGACCAT
CGCGCCATGGGTTCCTCCCCGTCGTAGTCTCTGTACCCTGTTCACAGATC
CACGTACTGTATTCAGAGAGAGATGTCCACGAGCTAGCACACGTAGCGCC
GACAGCAGTGGTAGCGGTCATACGGTTTGTCATCGCTGTACTGCAGTTTT
GCTGGTCTGACCAGGGTTACAGCAGCAGGCCAGCGCGGTGGCATGGCACT
GTATGCCGGAAAGACTTGGTTCGGGACTGCTGACTGGCGTGCATCCCCGC
CTCAAGTTGTCGTTGTACCCAGTGGATACATGCGGTGTCGTAGGCAGCGT
CAAGTGGGCCTTTGGGTTCCTGTTGCACGGCGTGCGGATTTCCTTTGATG
AGGTCCAGTCCTCTTCTGTATTGCTCCTAATTTGTCATGCAAACAAAAAA
GCATTCTCGAGATACCAACAAGTGGAACAACCACTGCTGTATCAACTTCA
TCGGCAGTCAGTCGTTGTTGGTAGGCAGACCGCTGTTTCTGGTCATTATA
TGTTGGACACTCTACAATTGTTTTTTGGTCAGCAGTTTCGTTGGAGAAAG
CTGCCGACAGTTAGATACAGAACATACGAAACCAGATACCACGTCGAGAC
ACATGTCGTGCCAAGCTCGGAAATGCTGACAAATTCGCTTTACGAATTCG
TTCCTAAGTCCCTCCTTTTTCGCGCGCGGGCCTCCGACACCGAGAGGTTG
AAACTTGTCTTGCTGAGGTCCCTGGGTTGATTCGCTAGCGGTCAGTGCGC
CTCACCTCACTTGTCTTGCCTTCCTAAGCACACCTGTTTTATGCAGTCAA
TCGATACACGTGTCATGGATTGTGCAGCTATTCCGCCCGTGAGCAAAAGT
TTGCGTTCATTAATTCGTTACTCAGTTTCTATCTCGCGCCCGCCGCTTGT
CCGTTGTGTCGCCACGCTTGCTGCCTCTGCCGCGGCTGCGTGCTGTCTGG
TGTGGGTTCTGCTTGACACCGACCGGGCTGGCATCAATCGTGGTGTCATG
GCAGACAACAGCGACGATAGCGACTACGAAGCGGAGGACGACAGCGACAA
CGTGAGCCAGCACTTTCTGCTGCACGTGAAGACATGTATTTGTACATTTG
AACCCAGAGATGGGGCCCTTTTCGCGCCGAACAAAAACAGTTCCCGCCGC
AACCGTTCTTGATCTTCCTTTTCCGAGAGCAGGGATACGCGTCCGGGGTT
GTAGCTTTTTCGGAAGCACGCGCTGCCCGCTTTGGGTTGCGGTTGTATAC
GTCGCCAGTGTGGGTGCGGGGACCACTGTAAGACATATCTAGGGGTCCGT
GATACTGCTGTTGGGTAAACAACCCCGACATGCGCGAGACTTGGGGGTGT
GGTGTTTATAAGACCTTTATATTTCTGTTTGCCCTCTGAAGTCGCTGCAT
CCTTGTCCTTCTTGCGGTATGCGACAACATCATGATGCTACCCGTGGCGT
CGAGACATCAATGGCCGCGTGGTATTCAGTGCCTGAGCATCGTCTGCGCG
GTGCGGTGCCGTCACCTGCTGTCTTTCCCCGTTATTTTTTACATTTTTCA
GGAAGGTGACTCCTCCGAGAAAAGCTCTGCAGAAGACAGCAGCAGCGACT
TCGAAACCGCTAACAAGAAGGCCAAAATAAGCAGACGGCTTTCTTCGCCT
CCTGCTCCACGATCGTCAGCCACACCAAACGGTACTTCGAAGAAGCACGG
CAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11704:1139..3442-

>mRNA_Ecto-sp13_S_contig11704.1474.1 ID=mRNA_Ecto-sp13_S_contig11704.1474.1|Name=mRNA_Ecto-sp13_S_contig11704.1474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11704:1139..3442- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGAACAATATTGAGGGCAACTTCCGCTCACAGGAAGGGATCAGC
TTCGCCTGCAGCTGGTAAAGTCGTCCAAGCGAAAGCTGGAAAGAAGAAGG
CTGTCGCCAAGTTACGCCAGAAGACGGAGCCTGCAGCTCCAGAGGATGAC
GAGGTGGAGGTCATCGATGATGCGGCTGTCAGAGACAACAGCGACGATAG
CGACTACGAAGCGGAGGACGACAGCGACAACGAAGGTGACTCCTCCGAGA
AAAGCTCTGCAGAAGACAGCAGCAGCGACTTCGAAACCGCTAACAAGAAG
GCCAAAATAAGCAGACGGCTTTCTTCGCCTCCTGCTCCACGATCGTCAGC
CACACCAAACGGTACTTCGAAGAAGCACGGCAGC
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