mRNA_Ecto-sp13_S_contig101146.146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101146.146.1
Unique NamemRNA_Ecto-sp13_S_contig101146.146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig101146.146.1 vs. uniprot
Match: D7G0L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.470e-40
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 MQKQVHTCLVPSERDFLLACLDEMHCRCDSLLHGKKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAMRTLIPL 222
            + +QVHTCLVPSERDFLLACLDEMHCRCDSLLHG+KQVAAFHEQGAVEALLEMLGMFKLDEVFLRQA+RTLIPL
Sbjct:   25 LMEQVHTCLVPSERDFLLACLDEMHCRCDSLLHGRKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPL 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101146.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0L4_ECTSI6.470e-4093.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101146contigEcto-sp13_S_contig101146:39..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size222
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.7134252-CDS-Ecto-sp13_S_contig101146:38..1571681462508.7134252-CDS-Ecto-sp13_S_contig101146:38..157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101146 39..157 -
1681462508.7629957-CDS-Ecto-sp13_S_contig101146:394..4971681462508.7629957-CDS-Ecto-sp13_S_contig101146:394..497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101146 395..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101146.146.1prot_Ecto-sp13_S_contig101146.146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101146 39..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101146.146.1

>prot_Ecto-sp13_S_contig101146.146.1 ID=prot_Ecto-sp13_S_contig101146.146.1|Name=mRNA_Ecto-sp13_S_contig101146.146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MQKQVHTCLVPSERDFLLACLDEMHCRCDSLLHGKKQVAAFHEQGAVEAL
LEMLGMFKLDEVFLRQAMRTLIPL
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mRNA from alignment at Ecto-sp13_S_contig101146:39..497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101146.146.1 ID=mRNA_Ecto-sp13_S_contig101146.146.1|Name=mRNA_Ecto-sp13_S_contig101146.146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101146:39..497- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAAAACAGGTTCATACGTGCCTGGTGCCTTCGGAGAGAGACTTCTT
GCTTGCCTGCCTAGACGAGATGCACTGCCGGTGCGACTCTCTTCTGCACG
GAAGTGAGTGTGCGTAACACAACCAAACTCTACAAGCAAACGCCACATGT
TTCGAGGATTGACTGGGGCGTTGAGATAGTAGGCGAATTGAGAGCGAGAG
TTCTACATATATTGATCAGACTCAGTCTTTGTTTTTCCGTCCCATTTCAT
CTGGGCGCCTGTCGCTTTAGGTTTTCGTACAATTTCTGGACGATGCAAAG
ATAATAAACCAGCTGAACAGACGTGCCTTGTTCCGAGCAGAAAAGCAGGT
AGCAGCCTTTCACGAGCAGGGCGCGGTGGAAGCCTTGTTGGAGATGTTGG
GCATGTTTAAACTGGACGAGGTTTTCCTCCGACAAGCCATGAGGACTCTC
ATCCCCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101146:39..497-

>mRNA_Ecto-sp13_S_contig101146.146.1 ID=mRNA_Ecto-sp13_S_contig101146.146.1|Name=mRNA_Ecto-sp13_S_contig101146.146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101146:39..497- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAAAACAGGTTCATACGTGCCTGGTGCCTTCGGAGAGAGACTTCTT
GCTTGCCTGCCTAGACGAGATGCACTGCCGGTGCGACTCTCTTCTGCACG
GAAAAAAGCAGGTAGCAGCCTTTCACGAGCAGGGCGCGGTGGAAGCCTTG
TTGGAGATGTTGGGCATGTTTAAACTGGACGAGGTTTTCCTCCGACAAGC
CATGAGGACTCTCATCCCCCTT
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