mRNA_Ecto-sp13_S_contig11571.1369.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11571.1369.1
Unique NamemRNA_Ecto-sp13_S_contig11571.1369.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11571.1369.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.420e-24
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    1 ETFRGDAMKHTTTDNLNTDQKKTRIRESAADLKVMYEKQERLKKRVMKFREECTELPPELGDAVHKFLISQETRKLLDSKIPPDSDER 264
            E+F GDA K+T  D+L+T QKKTRI ESAADLK   EKQ+RL+++ MK+ EEC E P + GDA+HKFLI+  TR LLD K+P +SDER
Sbjct:  143 ESFHGDAAKNTAIDHLSTAQKKTRILESAADLKATQEKQQRLEQKTMKYLEECREFPDDQGDAIHKFLIADSTRTLLDKKLPAESDER 230
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BLAST of mRNA_Ecto-sp13_S_contig11571.1369.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.140e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    4 TFRGDAMKHTTTDNLNTDQKKTRIRESAADLKVMYEKQERLKKRVMKFREECTELPPELGDAVHKFLISQETRKLLDSKIPPDSDER 264
            T  G+   +T    L++ QK T++ + A  +K   E  ER  ++V ++REEC E P + GDAVHKFLI QETR+LLD K+PP S++R
Sbjct:  169 TLTGEPKPNTANYRLSSGQKTTKLSQLATSMKAANEPAERWHRKVKQYREECIEFPKDQGDAVHKFLIDQETRELLDKKLPPKSEQR 255
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11571.1369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRH8_9PHAE5.420e-2461.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE2.140e-1445.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11571contigEcto-sp13_S_contig11571:4176..4573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462607.756072-UTR-Ecto-sp13_S_contig11571:4175..41961681462607.756072-UTR-Ecto-sp13_S_contig11571:4175..4196Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11571 4176..4196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462607.7703075-CDS-Ecto-sp13_S_contig11571:4196..42381681462607.7703075-CDS-Ecto-sp13_S_contig11571:4196..4238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11571 4197..4238 +
1681462607.7848167-CDS-Ecto-sp13_S_contig11571:4372..45731681462607.7848167-CDS-Ecto-sp13_S_contig11571:4372..4573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11571 4373..4573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11571.1369.1prot_Ecto-sp13_S_contig11571.1369.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11571 4197..4573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11571.1369.1

>prot_Ecto-sp13_S_contig11571.1369.1 ID=prot_Ecto-sp13_S_contig11571.1369.1|Name=mRNA_Ecto-sp13_S_contig11571.1369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MKHTTTDNLNTDQKKTRIRESAADLKVMYEKQERLKKRVMKFREECTELP
PELGDAVHKFLISQETRKLLDSKIPPDSDER
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mRNA from alignment at Ecto-sp13_S_contig11571:4176..4573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11571.1369.1 ID=mRNA_Ecto-sp13_S_contig11571.1369.1|Name=mRNA_Ecto-sp13_S_contig11571.1369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11571:4176..4573+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACCTTCCGCGGAGATGCGATGAAGCACACTACGACCGACAACCTGAA
CACCGATCAGAAGGTACGTCGCTCTTCAGAAGACCATTGTGGGCGTGTAG
CGGTAACTGGGGGGGCGTTAGGGGTGGTCGATGTGTGTTGCTCTTGTGCA
CCGAGCACCATTCTTATGTGCTCCCTCGCGACATCGCTTCCCTTCAGAAA
ACCAGGATTCGGGAGTCAGCGGCAGACTTGAAGGTCATGTACGAGAAACA
AGAGCGCTTGAAAAAGAGGGTGATGAAGTTTCGGGAGGAGTGTACTGAGC
TGCCGCCGGAACTAGGGGACGCTGTCCACAAATTTCTCATCTCTCAAGAG
ACGAGGAAGCTGCTCGACTCCAAGATCCCGCCGGACAGCGATGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11571:4176..4573+

>mRNA_Ecto-sp13_S_contig11571.1369.1 ID=mRNA_Ecto-sp13_S_contig11571.1369.1|Name=mRNA_Ecto-sp13_S_contig11571.1369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11571:4176..4573+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCACACTACGACCGACAACCTGAACACCGATCAGAAGAAAACCAG
GATTCGGGAGTCAGCGGCAGACTTGAAGGTCATGTACGAGAAACAAGAGC
GCTTGAAAAAGAGGGTGATGAAGTTTCGGGAGGAGTGTACTGAGCTGCCG
CCGGAACTAGGGGACGCTGTCCACAAATTTCTCATCTCTCAAGAGACGAG
GAAGCTGCTCGACTCCAAGATCCCGCCGGACAGCGATGAGAGG
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