mRNA_Ecto-sp13_S_contig11566.1364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11566.1364.1
Unique NamemRNA_Ecto-sp13_S_contig11566.1364.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11566.1364.1 vs. uniprot
Match: D8LHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW9_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 7.680e-10
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:    1 LVLGTEFCGDLKGVPWPPTLSSIVFWRRFN 90
            LVLGTEFCGDLKGVPWPPTLSSIVFWRRFN
Sbjct:  122 LVLGTEFCGDLKGVPWPPTLSSIVFWRRFN 151
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BLAST of mRNA_Ecto-sp13_S_contig11566.1364.1 vs. uniprot
Match: A0A6H5L9V1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9V1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.180e-8
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1 
Query: 1024 KMEAGVVFPPGLDRIEFVDTYRRVEGGGENSS 1119
            KMEAGVVFPPGLDRIEFVDTYRRVE GGE+SS
Sbjct:  320 KMEAGVVFPPGLDRIEFVDTYRRVESGGEDSS 351
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BLAST of mRNA_Ecto-sp13_S_contig11566.1364.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.180e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:    1 LVLGTEFCGDLKGVPWPPTLSSIVFWRR 84
            LVLGTEFCGDLKGVPWPPTLSSIVFWRR
Sbjct:  395 LVLGTEFCGDLKGVPWPPTLSSIVFWRR 422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11566.1364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHW9_ECTSI7.680e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9V1_9PHAE1.180e-893.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6U6_9PHAE2.180e-8100.00Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11566contigEcto-sp13_S_contig11566:1..2350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score72.4
Seed ortholog evalue5e-10
Seed eggNOG ortholog2880.D8LHW9
Model size1122
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.FNIP Repeat
EggNOG OGs2E9BD@1,2SFQ3@2759
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-18_000780.1
Cds size1122
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462607.3676949-CDS-Ecto-sp13_S_contig11566:0..831681462607.3676949-CDS-Ecto-sp13_S_contig11566:0..83Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11566 1..83 +
1681462607.3804371-CDS-Ecto-sp13_S_contig11566:492..6041681462607.3804371-CDS-Ecto-sp13_S_contig11566:492..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11566 493..604 +
1681462607.389928-CDS-Ecto-sp13_S_contig11566:971..12441681462607.389928-CDS-Ecto-sp13_S_contig11566:971..1244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11566 972..1244 +
1681462607.3999445-CDS-Ecto-sp13_S_contig11566:1696..23501681462607.3999445-CDS-Ecto-sp13_S_contig11566:1696..2350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11566 1697..2350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11566.1364.1prot_Ecto-sp13_S_contig11566.1364.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11566 1..2350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11566.1364.1

>prot_Ecto-sp13_S_contig11566.1364.1 ID=prot_Ecto-sp13_S_contig11566.1364.1|Name=mRNA_Ecto-sp13_S_contig11566.1364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=374bp
LVLGTEFCGDLKGVPWPPTLSSIVFWRRFNRAIDEVTWPQSLRKLTFGCN
FNQPVLGVRWPPALEVLTFGSWFDRPLAGVRFPDTLTTLALGRDFNQPLE
GIQWPQRLARLTFGFFFNRSIRTAAKNWPATLKHLSLGDCYNLPVEDVEW
PRGLEEILFGRGFNQQVEGVEWPPALRKVKFGACFDQSIADAGFPEELET
LELGFAFNRPFLDVVLPSGLKRLVFGEEFNRTVEGVGFPPGLEEIYFGVQ
FDQPVAAAVWPASLKILTFGDSFNKPLVGIRLPDGLLDCRFGKCFNQEID
QVSWPHSVRCLVFGEEFNHPICDVVWPESLTTLKLGSDFDRKMEAGVVFP
PGLDRIEFVDTYRRVEGGGENSS*
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mRNA from alignment at Ecto-sp13_S_contig11566:1..2350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11566.1364.1 ID=mRNA_Ecto-sp13_S_contig11566.1364.1|Name=mRNA_Ecto-sp13_S_contig11566.1364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11566:1..2350+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGCTTGGGACGGAGTTCTGCGGAGACCTGAAAGGGGTGCCCTGGCC
CCCGACCCTGAGCTCGATAGTGTTTTGGCGGAGGTGCGTGCAATTGGGAT
GGTGAGAGTTGCGTATTTGGTGGTTGGGCAAAGTACATGTAGATATCCTT
TTGCAGCAGCAGTAGACGGACGAATAGAACCCCGTTCCGGGGTCTCAGTA
CGGTCCGGAGTCATCGCACAGGGTTCGATGCAAGGATTAAGTAAAGAAAA
TGTAAAAAAAAAAAAACGACCGCACGAGGGTGCGCTGACTCGCAACCTTA
CGGTATGCAGACTCAACGACATGTGAATGTATTCGCTTGCACTGCAAGCA
TTGAAGCGCACACCGGCTTCTGCCGTGGCAAGAAACACAGCACTTGACGT
CTTTCGTGCGTATGCGTACGCCGCAATTGATTTTCAAAAAACTGACCTCG
GCTGCTACATACGTGGTGGCTCCGTTATGTTTAATCCGATAGGTTTAATA
GGGCGATCGATGAAGTAACGTGGCCGCAGTCGCTCAGGAAGCTCACCTTC
GGCTGTAACTTCAATCAGCCGGTCTTAGGGGTACGGTGGCCTCCTGCGCT
AGAGGTACGAAAAGGTGAAATGATGAATGGGCGTGGGTAACAAGGAGGCA
AAGCCGTATGCATCATTCGGGAGGGACACTGCCGTCCCGCGGTATTGGAG
AAATTACCGATGACGTAGAGCCTGGTGATTCCGCAAGGGCCCACCGTTGT
GATTGTAAGGACCCACGTTAGTACACACGCGCTGTTTTGTACACTTCGGG
GGCGAAACTGGACAGCCAGGAGAATCCCGGAACAGTAGTGTACCACCTTC
TTTGCTTGAAAGATTGGGCAGTGTGCGCAAAACAGACCACCAACAAGCAA
GGGGTCGACTTTCCCAACCATAGCCTCCTTGCAATGCTTGTGCTGCCTTG
GGGGCCAACGTACGCGCGCAGGTCCTCACGTTCGGGAGCTGGTTTGATCG
CCCCCTGGCCGGAGTACGCTTCCCGGACACTCTCACGACCCTTGCCCTGG
GAAGGGACTTCAACCAGCCTCTTGAAGGCATCCAATGGCCGCAGCGGCTG
GCTCGTCTGACTTTCGGGTTCTTCTTCAACCGGTCCATCCGAACCGCCGC
AAAGAACTGGCCGGCCACGCTTAAGCACCTGTCCCTAGGAGACTGCTACA
ACTTGCCTGTCGAAGACGTGGAGTGGCCTCGGGGGTTGGAAGAGGTGAGA
GGCCTCCTATGGTTGTCTAATGAGCAATCACTATGTGGTGTAGCGCCGCG
GCTAAAGATATGACCGTAGCCCAAAAATGTGGAAACTGCGAGAGAAGAAC
GCAGGGAGGCGGGGGGGGGATTAGGGTGATCCCAAGATTTTTCAACCCAT
GGCGGGGTGGGGGGGCACCTCACGAAAGAGGCTGGAACGCGTGGAAGGGA
GGAGGTGCCGATCGGTCGTTCGCGTCCGTGTGCGGCCCTGTACAGCAAAT
GGTTTTGAGCGACGCAAACTTCATCCTGACCGTCATCACTTCCCGCGGTA
CCCTCACCTGAACCGCACTCGTGAAGGTACCATTGTGTGTGTGTTAGTCC
CTTAACCTCGTCCTCCCCGTCGCTGTTGTTTTCTGGTGCTCGTGAATCTT
GCCTTCTTCGTTGCCGTCCGTCACACACATGCACACGCCCGCGCAGATAT
TGTTCGGTCGCGGGTTCAACCAACAAGTTGAGGGAGTTGAATGGCCTCCG
GCCCTGAGAAAGGTAAAGTTCGGGGCTTGCTTCGACCAAAGCATCGCCGA
TGCCGGCTTTCCCGAAGAGTTGGAGACGCTTGAGCTAGGGTTCGCCTTCA
ACCGTCCGTTCCTTGACGTCGTTTTGCCGAGTGGGCTTAAGAGGCTGGTG
TTCGGCGAGGAGTTCAACCGTACCGTGGAGGGCGTCGGTTTTCCGCCGGG
GCTGGAGGAGATTTACTTCGGCGTGCAGTTCGATCAGCCGGTAGCTGCTG
CGGTCTGGCCCGCATCGCTGAAGATACTGACGTTTGGGGATAGCTTTAAC
AAGCCGCTGGTTGGGATAAGGCTTCCCGACGGCCTGCTGGATTGCCGCTT
CGGGAAGTGTTTCAACCAGGAGATCGACCAAGTGTCGTGGCCTCACAGCG
TGCGTTGTCTAGTGTTTGGCGAGGAATTCAACCACCCCATCTGCGACGTA
GTTTGGCCCGAATCGCTGACGACGCTTAAGCTGGGGAGCGACTTCGACCG
TAAGATGGAGGCCGGGGTTGTCTTTCCTCCGGGCCTGGACAGGATAGAGT
TCGTGGACACCTACAGACGTGTGGAAGGCGGCGGAGAGAACAGCAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11566:1..2350+

>mRNA_Ecto-sp13_S_contig11566.1364.1 ID=mRNA_Ecto-sp13_S_contig11566.1364.1|Name=mRNA_Ecto-sp13_S_contig11566.1364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11566:1..2350+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGCTTGGGACGGAGTTCTGCGGAGACCTGAAAGGGGTGCCCTGGCC
CCCGACCCTGAGCTCGATAGTGTTTTGGCGGAGGTTTAATAGGGCGATCG
ATGAAGTAACGTGGCCGCAGTCGCTCAGGAAGCTCACCTTCGGCTGTAAC
TTCAATCAGCCGGTCTTAGGGGTACGGTGGCCTCCTGCGCTAGAGGTCCT
CACGTTCGGGAGCTGGTTTGATCGCCCCCTGGCCGGAGTACGCTTCCCGG
ACACTCTCACGACCCTTGCCCTGGGAAGGGACTTCAACCAGCCTCTTGAA
GGCATCCAATGGCCGCAGCGGCTGGCTCGTCTGACTTTCGGGTTCTTCTT
CAACCGGTCCATCCGAACCGCCGCAAAGAACTGGCCGGCCACGCTTAAGC
ACCTGTCCCTAGGAGACTGCTACAACTTGCCTGTCGAAGACGTGGAGTGG
CCTCGGGGGTTGGAAGAGATATTGTTCGGTCGCGGGTTCAACCAACAAGT
TGAGGGAGTTGAATGGCCTCCGGCCCTGAGAAAGGTAAAGTTCGGGGCTT
GCTTCGACCAAAGCATCGCCGATGCCGGCTTTCCCGAAGAGTTGGAGACG
CTTGAGCTAGGGTTCGCCTTCAACCGTCCGTTCCTTGACGTCGTTTTGCC
GAGTGGGCTTAAGAGGCTGGTGTTCGGCGAGGAGTTCAACCGTACCGTGG
AGGGCGTCGGTTTTCCGCCGGGGCTGGAGGAGATTTACTTCGGCGTGCAG
TTCGATCAGCCGGTAGCTGCTGCGGTCTGGCCCGCATCGCTGAAGATACT
GACGTTTGGGGATAGCTTTAACAAGCCGCTGGTTGGGATAAGGCTTCCCG
ACGGCCTGCTGGATTGCCGCTTCGGGAAGTGTTTCAACCAGGAGATCGAC
CAAGTGTCGTGGCCTCACAGCGTGCGTTGTCTAGTGTTTGGCGAGGAATT
CAACCACCCCATCTGCGACGTAGTTTGGCCCGAATCGCTGACGACGCTTA
AGCTGGGGAGCGACTTCGACCGTAAGATGGAGGCCGGGGTTGTCTTTCCT
CCGGGCCTGGACAGGATAGAGTTCGTGGACACCTACAGACGTGTGGAAGG
CGGCGGAGAGAACAGCAGTTAA
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