prot_Ecto-sp13_S_contig11558.1356.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11558.1356.1
Unique Nameprot_Ecto-sp13_S_contig11558.1356.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length290
Homology
BLAST of mRNA_Ecto-sp13_S_contig11558.1356.1 vs. uniprot
Match: A0A6H5LAW9_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAW9_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.300e-55
Identity = 250/301 (83.06%), Postives = 258/301 (85.71%), Query Frame = 0
Query:    1 FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDIDDVNGDGND----------NDNNVPPPLPPGRDDAPAAGAPRNEQDPPDDVLVEVVLDRVRDRALHAADAAYDAXXXXXXXXXXXXXXXXXXALSLPPDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ENAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGEDRVLVVGGGGVAAGIHGA 289
            FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNND D+VNG              N+ NVPPPLPPGR+DAPAAG PRNEQ+P DD+LVEV+LDRVRDRALHAA AA+DAXXXXXXXXX         AL LP DRA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +NAVPAGVGGNGAP AGEHGVGVAVPPVGDGGE RVLVVGGGGVAAGIHGA
Sbjct:  580 FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDNDNVNGXXXXXXXXXXXXXXNNINVPPPLPPGRNDAPAAGGPRNEQEPLDDILVEVMLDRVRDRALHAAAAAHDAXXXXXXXXXA--------ALPLPADRAAAVPPIGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNAVPAGVGGNGAPHAGEHGVGVAVPPVGDGGEGRVLVVGGGGVAAGIHGA 872          
BLAST of mRNA_Ecto-sp13_S_contig11558.1356.1 vs. uniprot
Match: D7G9B1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B1_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 6.030e-27
Identity = 156/288 (54.17%), Postives = 161/288 (55.90%), Query Frame = 0
Query:    1 FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDIDDVNGDGNDNDNNVPPPLPPGRDDAPAAGAPRNEQDPPDDVLVEVVLDRVRDRALHAADAAYDAXXXXXXXXXXXXXXXXXXALSLPPDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGEDRVLVVGGGGVAAGIHG 288
            FVNLVKALP+VLE WW GDED LR                                       AG PRNEQDPPDD+LVEV+LDRVRDRALHAA AA+D XXXXXXXXXXXXXXXXX  L LP  RA            XXXXXXXX                                                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +NAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGE RVL VGG  VAAGI G
Sbjct:  271 FVNLVKALPVVLERWWLGDEDELR--------------------------------------VAGGPRNEQDPPDDILVEVMLDRVRDRALHAAAAAHDXXXXXXXXXXXXXXXXXXATLPLPAGRAAAVPPIGEEGGEXXXXXXXXGEVEASGVPSVGGGGGDVGDYDGRAVAAAAEVPIPPERGVMDGEPPVVGRGTGGPVDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DNAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGEGRVLAVGGXXVAAGIQG 519          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11558.1356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAW9_9PHAE6.300e-5583.06RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D7G9B1_ECTSI6.030e-2754.17RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11558contigEcto-sp13_S_contig11558:3..1706 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11558.1356.1mRNA_Ecto-sp13_S_contig11558.1356.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11558 3..1708 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11558.1356.1 ID=prot_Ecto-sp13_S_contig11558.1356.1|Name=mRNA_Ecto-sp13_S_contig11558.1356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=290bp
FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDIDDVNGDGNDNDNNV
PPPLPPGRDDAPAAGAPRNEQDPPDDVLVEVVLDRVRDRALHAADAAYDA
AAAAHGAAAAARDAAAAAALSLPPDRAAAVPPVGEGGGEAAAPAAAGGEV
EASGAPSVDGGGGGGGGGDVGDDDGRAVAAPPEVPPPPERGVMDGAPPVV
GGGTGGPVDGNNGGGGGGGGGAQLPRIGGGAAAGGGEEENAVPAGVGGNG
APQAGEHGVGVAVPPVGDGGEDRVLVVGGGGVAAGIHGAR
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