mRNA_Ecto-sp13_S_contig11558.1356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11558.1356.1
Unique NamemRNA_Ecto-sp13_S_contig11558.1356.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11558.1356.1 vs. uniprot
Match: A0A6H5LAW9_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAW9_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.300e-55
Identity = 250/301 (83.06%), Postives = 258/301 (85.71%), Query Frame = 1 
Query:    1 FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDIDDVNGDGND----------NDNNVPPPLPPGRDDAPAAGAPRNEQDPPDDVLVEVVLDRVRDRALHAADAAYDAXXXXXXXXXXXXXXXXXXALSLPPDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ENAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGEDRVLVVGGGGVAAGIHGA 867
            FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNND D+VNG              N+ NVPPPLPPGR+DAPAAG PRNEQ+P DD+LVEV+LDRVRDRALHAA AA+DAXXXXXXXXX         AL LP DRA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +NAVPAGVGGNGAP AGEHGVGVAVPPVGDGGE RVLVVGGGGVAAGIHGA
Sbjct:  580 FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDNDNVNGXXXXXXXXXXXXXXNNINVPPPLPPGRNDAPAAGGPRNEQEPLDDILVEVMLDRVRDRALHAAAAAHDAXXXXXXXXXA--------ALPLPADRAAAVPPIGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNAVPAGVGGNGAPHAGEHGVGVAVPPVGDGGEGRVLVVGGGGVAAGIHGA 872
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BLAST of mRNA_Ecto-sp13_S_contig11558.1356.1 vs. uniprot
Match: D7G9B1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B1_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 6.030e-27
Identity = 156/288 (54.17%), Postives = 161/288 (55.90%), Query Frame = 1 
Query:    1 FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDIDDVNGDGNDNDNNVPPPLPPGRDDAPAAGAPRNEQDPPDDVLVEVVLDRVRDRALHAADAAYDAXXXXXXXXXXXXXXXXXXALSLPPDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGEDRVLVVGGGGVAAGIHG 864
            FVNLVKALP+VLE WW GDED LR                                       AG PRNEQDPPDD+LVEV+LDRVRDRALHAA AA+D XXXXXXXXXXXXXXXXX  L LP  RA            XXXXXXXX                                                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +NAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGE RVL VGG  VAAGI G
Sbjct:  271 FVNLVKALPVVLERWWLGDEDELR--------------------------------------VAGGPRNEQDPPDDILVEVMLDRVRDRALHAAAAAHDXXXXXXXXXXXXXXXXXXATLPLPAGRAAAVPPIGEEGGEXXXXXXXXGEVEASGVPSVGGGGGDVGDYDGRAVAAAAEVPIPPERGVMDGEPPVVGRGTGGPVDGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DNAVPAGVGGNGAPQAGEHGVGVAVPPVGDGGEGRVLAVGGXXVAAGIQG 519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11558.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAW9_9PHAE6.300e-5583.06RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D7G9B1_ECTSI6.030e-2754.17RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11558contigEcto-sp13_S_contig11558:3..1708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.9
Seed ortholog evalue2.5e-25
Seed eggNOG ortholog2880.D7G9B1
Model size873
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
Cds size870
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462606.7967055-CDS-Ecto-sp13_S_contig11558:2..751681462606.7967055-CDS-Ecto-sp13_S_contig11558:2..75Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11558 3..75 +
1681462606.8083837-CDS-Ecto-sp13_S_contig11558:909..17061681462606.8083837-CDS-Ecto-sp13_S_contig11558:909..1706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11558 910..1706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11558.1356.1prot_Ecto-sp13_S_contig11558.1356.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11558 3..1706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11558.1356.1

>prot_Ecto-sp13_S_contig11558.1356.1 ID=prot_Ecto-sp13_S_contig11558.1356.1|Name=mRNA_Ecto-sp13_S_contig11558.1356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=290bp
FVNLVKALPIVLECWWFGDEDGLRGQAPLPRLNNDIDDVNGDGNDNDNNV
PPPLPPGRDDAPAAGAPRNEQDPPDDVLVEVVLDRVRDRALHAADAAYDA
AAAAHGAAAAARDAAAAAALSLPPDRAAAVPPVGEGGGEAAAPAAAGGEV
EASGAPSVDGGGGGGGGGDVGDDDGRAVAAPPEVPPPPERGVMDGAPPVV
GGGTGGPVDGNNGGGGGGGGGAQLPRIGGGAAAGGGEEENAVPAGVGGNG
APQAGEHGVGVAVPPVGDGGEDRVLVVGGGGVAAGIHGAR
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mRNA from alignment at Ecto-sp13_S_contig11558:3..1708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11558.1356.1 ID=mRNA_Ecto-sp13_S_contig11558.1356.1|Name=mRNA_Ecto-sp13_S_contig11558.1356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11558:3..1708+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCAACCTTGTCAAGGCGCTGCCTATCGTGCTGGAGTGCTGGTGGTT
CGGAGACGAGGACGGACTGCGAGGTGCGTGTTGTTGGTGATGTCGTCGTT
CGTTGTAGTGGTGGTTTTTGTGGCCATGGGTGGCGCCGTCGTCATCATCG
TCTTTGCCCGTGATGGTGTTTTTTTGTTGGTGGTGTCGCCGTCGTCATCA
TCGCCGTTGGTGGTAATGATGATAGTTTTGGTCGTTGGTGACGTACAATT
TTTCGGTGTTGTTGTTGTTGATGGTGATGGTGATGGTGTTGTTGTTGTTG
TTGTTGTTGTCGTTGTAGTGGTCGTCGTTTTGGTGGTATTGTGGTCTTGG
CTCCTCCCCTTGTGGACCCCACGTTTCTTTGCCATCGTTCTCGCCGCCAT
GCCCGAGGACGTATCTCCGCCTCAATATATATCGATTACTTCGTTCAACG
TGGATGGAATCACCCGGTATGGGCTCGATGGTCAAGCCCTTGTACACACC
AAACCACATCGTGGCAAGCTATACTTGCCGTCATTTTATGGGCGGTAACA
TACCCCGCACCAACCCTTTGCTTGGGCGCACGAAAGTCTCTGTGGTGGAT
ATTTTACCCTATGCTCCGAAATACGGGATGGGGCAGCAGAACCATCGCTG
AGTTTTTGCAGTCTTCAATGGTGTCCGTTTGGTGCGCCACTTTTTGTGAG
TTTGCTGGAGATAATCTTTGGCAATCGACCCGTTTCTCCACGCCCTCCGG
CATACGTGCCTTGTAGATGAAGCTCCCAACAGGAACAACACGTGGTGTTG
TGCGTGTCCTTCCTGAGAGCATATGAAGCGATATATACAAGCGCGGGCGT
TGTATCATTTCGTGGATCATCATCCCCTCGCGCTGTCCTATTACCTTCAT
CCCTCAGGACAAGCACCGCTGCCCCGGCTGAACAACGACATCGATGACGT
CAACGGTGACGGTAACGACAACGATAACAATGTGCCCCCTCCCCTTCCTC
CCGGGAGAGACGACGCCCCCGCGGCGGGGGCCCCGCGGAATGAACAAGAC
CCCCCCGACGATGTCCTCGTGGAGGTTGTGCTAGATCGTGTCCGCGACAG
GGCCCTCCACGCCGCTGACGCCGCCTACGATGCAGCGGCTGCCGCCCACG
GTGCAGCGGCCGCCGCCCGCGATGCAGCAGCGGCCGCCGCGCTGTCGCTC
CCACCTGACAGGGCAGCGGCCGTCCCGCCAGTTGGCGAGGGAGGAGGGGA
AGCGGCCGCACCTGCTGCGGCTGGCGGTGAGGTCGAAGCGTCGGGGGCAC
CCAGCGTTGACGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGTTGGTGAT
GATGACGGTAGGGCGGTGGCCGCGCCGCCGGAGGTTCCGCCTCCTCCAGA
GCGAGGCGTTATGGACGGAGCTCCGCCGGTCGTTGGGGGGGGCACAGGGG
GCCCCGTAGACGGCAACAACGGAGGCGGCGGCGGCGGCGGCGGCGGCGCG
CAATTGCCTAGAATTGGAGGAGGAGCGGCGGCCGGGGGTGGGGAGGAGGA
AAACGCTGTCCCCGCTGGCGTTGGCGGTAACGGGGCACCGCAGGCGGGAG
AGCATGGAGTCGGTGTTGCTGTTCCCCCGGTAGGGGACGGTGGCGAGGAT
CGCGTTCTCGTCGTTGGTGGCGGGGGGGTCGCGGCTGGGATTCACGGCGC
CCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11558:3..1708+

>mRNA_Ecto-sp13_S_contig11558.1356.1 ID=mRNA_Ecto-sp13_S_contig11558.1356.1|Name=mRNA_Ecto-sp13_S_contig11558.1356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11558:3..1708+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCAACCTTGTCAAGGCGCTGCCTATCGTGCTGGAGTGCTGGTGGTT
CGGAGACGAGGACGGACTGCGAGGACAAGCACCGCTGCCCCGGCTGAACA
ACGACATCGATGACGTCAACGGTGACGGTAACGACAACGATAACAATGTG
CCCCCTCCCCTTCCTCCCGGGAGAGACGACGCCCCCGCGGCGGGGGCCCC
GCGGAATGAACAAGACCCCCCCGACGATGTCCTCGTGGAGGTTGTGCTAG
ATCGTGTCCGCGACAGGGCCCTCCACGCCGCTGACGCCGCCTACGATGCA
GCGGCTGCCGCCCACGGTGCAGCGGCCGCCGCCCGCGATGCAGCAGCGGC
CGCCGCGCTGTCGCTCCCACCTGACAGGGCAGCGGCCGTCCCGCCAGTTG
GCGAGGGAGGAGGGGAAGCGGCCGCACCTGCTGCGGCTGGCGGTGAGGTC
GAAGCGTCGGGGGCACCCAGCGTTGACGGCGGCGGCGGCGGCGGCGGCGG
CGGCGATGTTGGTGATGATGACGGTAGGGCGGTGGCCGCGCCGCCGGAGG
TTCCGCCTCCTCCAGAGCGAGGCGTTATGGACGGAGCTCCGCCGGTCGTT
GGGGGGGGCACAGGGGGCCCCGTAGACGGCAACAACGGAGGCGGCGGCGG
CGGCGGCGGCGGCGCGCAATTGCCTAGAATTGGAGGAGGAGCGGCGGCCG
GGGGTGGGGAGGAGGAAAACGCTGTCCCCGCTGGCGTTGGCGGTAACGGG
GCACCGCAGGCGGGAGAGCATGGAGTCGGTGTTGCTGTTCCCCCGGTAGG
GGACGGTGGCGAGGATCGCGTTCTCGTCGTTGGTGGCGGGGGGGTCGCGG
CTGGGATTCACGGCGCCCGC
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