mRNA_Ecto-sp13_S_contig11556.1355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: D8LGK0_ECTSI (MPAB_Lcp_cat domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK0_ECTSI) HSP 1 Score: 470 bits (1209), Expect = 2.710e-155 Identity = 224/231 (96.97%), Postives = 226/231 (97.84%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFEGLPSYTGKGGGGSGPVICGADGTSPLAVNAAGKAKDKSI 693
RYGWRRCTDLE EALLAHYGEMGRRMGIKGVDSW TWQDADDFQAAYA+EHFRFAASN A+AGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSD LVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFEGLPSYTGKGGGGSGPVICGADGTSPLA NAAGKAKDKSI
Sbjct: 156 RYGWRRCTDLETEALLAHYGEMGRRMGIKGVDSWKTWQDADDFQAAYAKEHFRFAASNAAIAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDVLVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFEGLPSYTGKGGGGSGPVICGADGTSPLAFNAAGKAKDKSI 386
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A6H5K0Q2_9PHAE (MPAB_Lcp_cat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q2_9PHAE) HSP 1 Score: 169 bits (429), Expect = 3.830e-42 Identity = 91/226 (40.27%), Postives = 126/226 (55.75%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLS--------------GVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFE-GLPSYTGKGGGGSGPVICG 633
R WRRCTD+EK A LA+Y G R+GIKG W TW DA +Y E+F+ + + +DL +S VPS L+ R V L+DPPLL+ G AP LL+WF ++ +RA+ + +L+PPR RRTP S G + +D + P + FHD + GCL+Y++GY+I+++G CPAGRL E G+P +TG G GGS I G
Sbjct: 176 RLEWRRCTDIEKAAFLAYYQIYGERLGIKGAREWKTWDDAHAHAQSYEAEYFQRSEGVEELVNQNMDLLLSSVPSF-LKPLGRKVVCVLLDPPLLEVLGLSEAPLLLKWFSNAAIKLRAMVLLYLVPPR--LFPARRTPASRLGCVPSQCLASNAGGVKSAEDADVVRVPQFSQFHDAKQGCLFYKNGYQIKNVGTRKCPAGRLMEKGVPVFTGTGAGGSATNING 398
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A6N7CEU2_9NOCA (MPAB_Lcp_cat domain-containing protein n=3 Tax=Rhodococcus TaxID=1827 RepID=A0A6N7CEU2_9NOCA) HSP 1 Score: 100 bits (249), Expect = 2.050e-19 Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVR 408
R+GWRR T E+ A Y ++G RMGI+ + T++D F+A Y HFR+ N V T++LF S P+ L+ GVYAL+DP +L AFGFP AP LQ + +L +RA F+R LLPPR + A R
Sbjct: 139 RFGWRRLTRNERLACFHFYRQVGVRMGIRNLPE--TFEDFYRFKAEYERTHFRYTDDNHRVGTYTLNLFCSWFPAP-LRPLVAHGVYALLDPMMLAAFGFPAAPHWLQNASRRALRIRARFVR-LLPPRRESKAAR 270
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A518GX17_9BACT (MPAB_Lcp_cat domain-containing protein n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GX17_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 8.740e-19 Identity = 67/203 (33.00%), Postives = 96/203 (47.29%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAG--RLFEGLPSYTGKG 603
R+GWR ++E+ AL +GE+GRRMGI+ + + D + EHFRFA+SN + T+DLF+ P + L+ R +YAL+D P+L+AFGFP + ++ L MRA +R L+PPR R P S Y GY++ DLGP P G G P +G+G
Sbjct: 128 RFGWRPMIEVERLALFHFWGEVGRRMGIRDIPG--AYDAFDRLNLDFEREHFRFASSNATIGRATLDLFLGWYP-RPLRPLVRPAMYALMDEPILEAFGFPRPSRATRSMVQAGLAMRARLLR-LMPPR-------RRPYLRTEHHRPRS--------------------YPRGYRMADLGPPPGPDGVEAGSAGPPGPSGRG 299
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: Q0S3J7_RHOJR (MPAB_Lcp_cat domain-containing protein n=26 Tax=Rhodococcus TaxID=1827 RepID=Q0S3J7_RHOJR) HSP 1 Score: 97.1 bits (240), Expect = 3.410e-18 Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVR 408
R+GWRR T E+ A Y ++G RMGIK + ++ F+ Y HFR+ N V T+ LF S P+ A+ GVYAL+DP +L AFGFP AP LQ + +L +RA F+RFL PPR + A R
Sbjct: 145 RFGWRRLTPNERLACFHFYRQVGIRMGIKNIPE--DFEAFYRFKVDYERRHFRYTDDNHRVGTYTLKLFCSWFPAPVRPLVAQ-GVYALLDPMMLSAFGFPAAPVWLQNASRRALGIRARFVRFL-PPRRESKAAR 276
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A5C6BJS7_9PLAN (MPAB_Lcp_cat domain-containing protein n=1 Tax=Symmachiella macrocystis TaxID=2527985 RepID=A0A5C6BJS7_9PLAN) HSP 1 Score: 96.3 bits (238), Expect = 3.970e-18 Identity = 59/186 (31.72%), Postives = 87/186 (46.77%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCP 558
RYGWR + E+ + +G RM I + ++ + F Y + +FRF +N T +LFVS P +A R +YAL+DPPLL+AFGFP+AP L+ + G+LW+RA +RF P + + +T S Y DGY IE++GP + P
Sbjct: 128 RYGWRPLCEQERLGFFYFWRNIGLRMKIAEIPE--DYEMYETFNRDYEQRNFRFCETNQRTGAATRELFVSWFP-RAAAPLVRSAIYALLDPPLLEAFGFPSAPWPLRSLVSGTLWVRARALRFFPPRKHPRLRTGQTYPS-----------------------------YPDGYTIENIGPRSAP 281
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A1H5J1M1_RHOJO (Uncharacterized conserved protein, DUF2236 family n=3 Tax=Rhodococcus TaxID=1827 RepID=A0A1H5J1M1_RHOJO) HSP 1 Score: 95.5 bits (236), Expect = 1.130e-17 Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVR 408
R+GWRR T E+ A Y ++G RMGI + ++ D F+A Y ++HFR+ N V T+ LF S P+ L+ GVY+L+DP +L AFGFP AP LQ + +L +RA F+ FL PPR A R
Sbjct: 145 RFGWRRLTPNERLASFHFYRQVGIRMGITNIPE--SYADFYRFKADYEQKHFRYTDDNHRVGTYTLRLFCSWFPAP-LRPVVAQGVYSLLDPMMLAAFGFPAAPLRLQKLSRRALRIRARFVSFL-PPRRRSKAAR 276
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A6N8GF80_9ACTN (DUF2236 domain-containing protein n=2 Tax=Streptomonospora sp. PA3 TaxID=2607326 RepID=A0A6N8GF80_9ACTN) HSP 1 Score: 95.1 bits (235), Expect = 1.830e-17 Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQA---AYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPR 387
RYGWRR T+ E++A L +Y +GRRM I+ + + D + F+A Y EHFR+A +N V T+D+F + P+ L+ AA GV AL+D P+L+AFGF AP L+ + +L +RA + LPPR
Sbjct: 130 RYGWRRLTEAERQAALHYYTAVGRRMNIRDIPA-----DLESFRAFKEGYEREHFRYADTNARVGQATLDIFRAWFPAP-LRPAADAGVRALLDEPMLEAFGFRPAPRWLRRMVDAALRLRARAVA-QLPPR 254
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: UPI001E5B42AC (DUF2236 domain-containing protein n=1 Tax=Saccharothrix sp. NEAU-S10 TaxID=2893018 RepID=UPI001E5B42AC) HSP 1 Score: 92.8 bits (229), Expect = 5.560e-17 Identity = 70/182 (38.46%), Postives = 89/182 (48.90%), Query Frame = 1
Query: 1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVP-SKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLG 543
RYGWR TD E+ A YG +G RMG+K + T+ F+ AY EEHF ++ +N A+ T+DLF S P AL S A V A++D P+L AFGFP P L K +L RA +R LLPPR RTP + DP + G Y GY+ DLG
Sbjct: 129 RYGWRPLTDHERLAAFHFYGAVGVRMGVKELPP--TYAAYASFKRAYEEEHFTYSDTNRAIGRYTLDLFCSWYPVPSALTSRA---VLAMLDEPMLTAFGFPAQPQWLVRAAKTALKARAATVR-LLPPR-------RTP---------------RLTNDPKNRTYPG---YPTGYRPADLG 279
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: UPI001F104FD3 (DUF2236 domain-containing protein n=1 Tax=Gordonia sp. ABSL49_1 TaxID=2920941 RepID=UPI001F104FD3) HSP 1 Score: 90.5 bits (223), Expect = 6.160e-16 Identity = 60/188 (31.91%), Postives = 88/188 (46.81%), Query Frame = 1
Query: 4 YGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKAL-QSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPAT--CP 558
Y WR+ TD E L HY ++G+ M IK + + T+ + + F Y EHF ++A + VA T+DL + +P + L + R +AL+D PLL+AFG+P + + ++G L R L IR PR VKP+Y G Y GY++EDLG CP
Sbjct: 137 YEWRKLTDHEITGLTNHYRKLGKHMAIKNLPA--TYAEFEKFLVDYEREHFAYSADSRKVADATLDLLCTFLPYRLLPRPVVRRMSFALMDDPLLEAFGYPKPTAVERVLVRGGLKARGLAIRTFARPR------------------------VKPIYGREMSQVRG---YSRGYQVEDLGTFAPGCP 295 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11556.1355.1 >prot_Ecto-sp13_S_contig11556.1355.1 ID=prot_Ecto-sp13_S_contig11556.1355.1|Name=mRNA_Ecto-sp13_S_contig11556.1355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp MGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSback to top mRNA from alignment at Ecto-sp13_S_contig11556:64..5374+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11556.1355.1 ID=mRNA_Ecto-sp13_S_contig11556.1355.1|Name=mRNA_Ecto-sp13_S_contig11556.1355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11556:64..5374+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11556:64..5374+ >mRNA_Ecto-sp13_S_contig11556.1355.1 ID=mRNA_Ecto-sp13_S_contig11556.1355.1|Name=mRNA_Ecto-sp13_S_contig11556.1355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11556:64..5374+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |