mRNA_Ecto-sp13_S_contig11556.1355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11556.1355.1
Unique NamemRNA_Ecto-sp13_S_contig11556.1355.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: D8LGK0_ECTSI (MPAB_Lcp_cat domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK0_ECTSI)

HSP 1 Score: 470 bits (1209), Expect = 2.710e-155
Identity = 224/231 (96.97%), Postives = 226/231 (97.84%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFEGLPSYTGKGGGGSGPVICGADGTSPLAVNAAGKAKDKSI 693
            RYGWRRCTDLE EALLAHYGEMGRRMGIKGVDSW TWQDADDFQAAYA+EHFRFAASN A+AGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSD LVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFEGLPSYTGKGGGGSGPVICGADGTSPLA NAAGKAKDKSI
Sbjct:  156 RYGWRRCTDLETEALLAHYGEMGRRMGIKGVDSWKTWQDADDFQAAYAKEHFRFAASNAAIAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDVLVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFEGLPSYTGKGGGGSGPVICGADGTSPLAFNAAGKAKDKSI 386          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A6H5K0Q2_9PHAE (MPAB_Lcp_cat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q2_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.830e-42
Identity = 91/226 (40.27%), Postives = 126/226 (55.75%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLS--------------GVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAGRLFE-GLPSYTGKGGGGSGPVICG 633
            R  WRRCTD+EK A LA+Y   G R+GIKG   W TW DA     +Y  E+F+ +     +    +DL +S VPS  L+   R  V  L+DPPLL+  G   AP LL+WF   ++ +RA+ + +L+PPR      RRTP S              G  +    +D +  P +  FHD + GCL+Y++GY+I+++G   CPAGRL E G+P +TG G GGS   I G
Sbjct:  176 RLEWRRCTDIEKAAFLAYYQIYGERLGIKGAREWKTWDDAHAHAQSYEAEYFQRSEGVEELVNQNMDLLLSSVPSF-LKPLGRKVVCVLLDPPLLEVLGLSEAPLLLKWFSNAAIKLRAMVLLYLVPPR--LFPARRTPASRLGCVPSQCLASNAGGVKSAEDADVVRVPQFSQFHDAKQGCLFYKNGYQIKNVGTRKCPAGRLMEKGVPVFTGTGAGGSATNING 398          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A6N7CEU2_9NOCA (MPAB_Lcp_cat domain-containing protein n=3 Tax=Rhodococcus TaxID=1827 RepID=A0A6N7CEU2_9NOCA)

HSP 1 Score: 100 bits (249), Expect = 2.050e-19
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVR 408
            R+GWRR T  E+ A    Y ++G RMGI+ +    T++D   F+A Y   HFR+   N  V   T++LF S  P+  L+     GVYAL+DP +L AFGFP AP  LQ   + +L +RA F+R LLPPR +  A R
Sbjct:  139 RFGWRRLTRNERLACFHFYRQVGVRMGIRNLPE--TFEDFYRFKAEYERTHFRYTDDNHRVGTYTLNLFCSWFPAP-LRPLVAHGVYALLDPMMLAAFGFPAAPHWLQNASRRALRIRARFVR-LLPPRRESKAAR 270          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A518GX17_9BACT (MPAB_Lcp_cat domain-containing protein n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518GX17_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 8.740e-19
Identity = 67/203 (33.00%), Postives = 96/203 (47.29%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCPAG--RLFEGLPSYTGKG 603
            R+GWR   ++E+ AL   +GE+GRRMGI+ +     +   D     +  EHFRFA+SN  +   T+DLF+   P + L+   R  +YAL+D P+L+AFGFP      +  ++  L MRA  +R L+PPR       R P          S                    Y  GY++ DLGP   P G      G P  +G+G
Sbjct:  128 RFGWRPMIEVERLALFHFWGEVGRRMGIRDIPG--AYDAFDRLNLDFEREHFRFASSNATIGRATLDLFLGWYP-RPLRPLVRPAMYALMDEPILEAFGFPRPSRATRSMVQAGLAMRARLLR-LMPPR-------RRPYLRTEHHRPRS--------------------YPRGYRMADLGPPPGPDGVEAGSAGPPGPSGRG 299          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: Q0S3J7_RHOJR (MPAB_Lcp_cat domain-containing protein n=26 Tax=Rhodococcus TaxID=1827 RepID=Q0S3J7_RHOJR)

HSP 1 Score: 97.1 bits (240), Expect = 3.410e-18
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVR 408
            R+GWRR T  E+ A    Y ++G RMGIK +     ++    F+  Y   HFR+   N  V   T+ LF S  P+      A+ GVYAL+DP +L AFGFP AP  LQ   + +L +RA F+RFL PPR +  A R
Sbjct:  145 RFGWRRLTPNERLACFHFYRQVGIRMGIKNIPE--DFEAFYRFKVDYERRHFRYTDDNHRVGTYTLKLFCSWFPAPVRPLVAQ-GVYALLDPMMLSAFGFPAAPVWLQNASRRALGIRARFVRFL-PPRRESKAAR 276          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A5C6BJS7_9PLAN (MPAB_Lcp_cat domain-containing protein n=1 Tax=Symmachiella macrocystis TaxID=2527985 RepID=A0A5C6BJS7_9PLAN)

HSP 1 Score: 96.3 bits (238), Expect = 3.970e-18
Identity = 59/186 (31.72%), Postives = 87/186 (46.77%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPATCP 558
            RYGWR   + E+      +  +G RM I  +     ++  + F   Y + +FRF  +N      T +LFVS  P +A     R  +YAL+DPPLL+AFGFP+AP  L+  + G+LW+RA  +RF  P +   +   +T  S                             Y DGY IE++GP + P
Sbjct:  128 RYGWRPLCEQERLGFFYFWRNIGLRMKIAEIPE--DYEMYETFNRDYEQRNFRFCETNQRTGAATRELFVSWFP-RAAAPLVRSAIYALLDPPLLEAFGFPSAPWPLRSLVSGTLWVRARALRFFPPRKHPRLRTGQTYPS-----------------------------YPDGYTIENIGPRSAP 281          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A1H5J1M1_RHOJO (Uncharacterized conserved protein, DUF2236 family n=3 Tax=Rhodococcus TaxID=1827 RepID=A0A1H5J1M1_RHOJO)

HSP 1 Score: 95.5 bits (236), Expect = 1.130e-17
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVR 408
            R+GWRR T  E+ A    Y ++G RMGI  +    ++ D   F+A Y ++HFR+   N  V   T+ LF S  P+  L+     GVY+L+DP +L AFGFP AP  LQ   + +L +RA F+ FL PPR    A R
Sbjct:  145 RFGWRRLTPNERLASFHFYRQVGIRMGITNIPE--SYADFYRFKADYEQKHFRYTDDNHRVGTYTLRLFCSWFPAP-LRPVVAQGVYSLLDPMMLAAFGFPAAPLRLQKLSRRALRIRARFVSFL-PPRRRSKAAR 276          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: A0A6N8GF80_9ACTN (DUF2236 domain-containing protein n=2 Tax=Streptomonospora sp. PA3 TaxID=2607326 RepID=A0A6N8GF80_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-17
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQA---AYAEEHFRFAASNTAVAGVTVDLFVSLVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPR 387
            RYGWRR T+ E++A L +Y  +GRRM I+ + +     D + F+A    Y  EHFR+A +N  V   T+D+F +  P+  L+ AA  GV AL+D P+L+AFGF  AP  L+  +  +L +RA  +   LPPR
Sbjct:  130 RYGWRRLTEAERQAALHYYTAVGRRMNIRDIPA-----DLESFRAFKEGYEREHFRYADTNARVGQATLDIFRAWFPAP-LRPAADAGVRALLDEPMLEAFGFRPAPRWLRRMVDAALRLRARAVA-QLPPR 254          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: UPI001E5B42AC (DUF2236 domain-containing protein n=1 Tax=Saccharothrix sp. NEAU-S10 TaxID=2893018 RepID=UPI001E5B42AC)

HSP 1 Score: 92.8 bits (229), Expect = 5.560e-17
Identity = 70/182 (38.46%), Postives = 89/182 (48.90%), Query Frame = 1
Query:    1 RYGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVP-SKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLG 543
            RYGWR  TD E+ A    YG +G RMG+K +    T+     F+ AY EEHF ++ +N A+   T+DLF S  P   AL S A   V A++D P+L AFGFP  P  L    K +L  RA  +R LLPPR       RTP               +   DP +    G   Y  GY+  DLG
Sbjct:  129 RYGWRPLTDHERLAAFHFYGAVGVRMGVKELPP--TYAAYASFKRAYEEEHFTYSDTNRAIGRYTLDLFCSWYPVPSALTSRA---VLAMLDEPMLTAFGFPAQPQWLVRAAKTALKARAATVR-LLPPR-------RTP---------------RLTNDPKNRTYPG---YPTGYRPADLG 279          
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Match: UPI001F104FD3 (DUF2236 domain-containing protein n=1 Tax=Gordonia sp. ABSL49_1 TaxID=2920941 RepID=UPI001F104FD3)

HSP 1 Score: 90.5 bits (223), Expect = 6.160e-16
Identity = 60/188 (31.91%), Postives = 88/188 (46.81%), Query Frame = 1
Query:    4 YGWRRCTDLEKEALLAHYGEMGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVSLVPSKAL-QSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALFIRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYYRDGYKIEDLGPAT--CP 558
            Y WR+ TD E   L  HY ++G+ M IK + +  T+ + + F   Y  EHF ++A +  VA  T+DL  + +P + L +   R   +AL+D PLL+AFG+P    + +  ++G L  R L IR    PR                        VKP+Y        G   Y  GY++EDLG     CP
Sbjct:  137 YEWRKLTDHEITGLTNHYRKLGKHMAIKNLPA--TYAEFEKFLVDYEREHFAYSADSRKVADATLDLLCTFLPYRLLPRPVVRRMSFALMDDPLLEAFGYPKPTAVERVLVRGGLKARGLAIRTFARPR------------------------VKPIYGREMSQVRG---YSRGYQVEDLGTFAPGCP 295          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11556.1355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK0_ECTSI2.710e-15596.97MPAB_Lcp_cat domain-containing protein n=2 Tax=Ect... [more]
A0A6H5K0Q2_9PHAE3.830e-4240.27MPAB_Lcp_cat domain-containing protein n=1 Tax=Ect... [more]
A0A6N7CEU2_9NOCA2.050e-1943.38MPAB_Lcp_cat domain-containing protein n=3 Tax=Rho... [more]
A0A518GX17_9BACT8.740e-1933.00MPAB_Lcp_cat domain-containing protein n=1 Tax=Tau... [more]
Q0S3J7_RHOJR3.410e-1841.91MPAB_Lcp_cat domain-containing protein n=26 Tax=Rh... [more]
A0A5C6BJS7_9PLAN3.970e-1831.72MPAB_Lcp_cat domain-containing protein n=1 Tax=Sym... [more]
A0A1H5J1M1_RHOJO1.130e-1741.18Uncharacterized conserved protein, DUF2236 family ... [more]
A0A6N8GF80_9ACTN1.830e-1741.67DUF2236 domain-containing protein n=2 Tax=Streptom... [more]
UPI001E5B42AC5.560e-1738.46DUF2236 domain-containing protein n=1 Tax=Saccharo... [more]
UPI001F104FD36.160e-1631.91DUF2236 domain-containing protein n=1 Tax=Gordonia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11556contigEcto-sp13_S_contig11556:64..5374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score425.2
Seed ortholog evalue1.7e-116
Seed eggNOG ortholog2880.D8LGK0
Model size2697
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.oleate hydratase activity
EggNOG OGs2S1KN@2759,COG4716@1
Cds size633
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11556.1355.1prot_Ecto-sp13_S_contig11556.1355.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11556 127..3373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462606.7051866-UTR-Ecto-sp13_S_contig11556:63..1261681462606.7051866-UTR-Ecto-sp13_S_contig11556:63..126Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11556 64..126 +
1681462606.7613556-UTR-Ecto-sp13_S_contig11556:3373..53741681462606.7613556-UTR-Ecto-sp13_S_contig11556:3373..5374Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11556 3374..5374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462606.7177157-CDS-Ecto-sp13_S_contig11556:126..2071681462606.7177157-CDS-Ecto-sp13_S_contig11556:126..207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11556 127..207 +
1681462606.725509-CDS-Ecto-sp13_S_contig11556:679..8411681462606.725509-CDS-Ecto-sp13_S_contig11556:679..841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11556 680..841 +
1681462606.7336369-CDS-Ecto-sp13_S_contig11556:1583..17161681462606.7336369-CDS-Ecto-sp13_S_contig11556:1583..1716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11556 1584..1716 +
1681462606.7416487-CDS-Ecto-sp13_S_contig11556:2102..21841681462606.7416487-CDS-Ecto-sp13_S_contig11556:2102..2184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11556 2103..2184 +
1681462606.750004-CDS-Ecto-sp13_S_contig11556:3198..33731681462606.750004-CDS-Ecto-sp13_S_contig11556:3198..3373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11556 3199..3373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11556.1355.1

>prot_Ecto-sp13_S_contig11556.1355.1 ID=prot_Ecto-sp13_S_contig11556.1355.1|Name=mRNA_Ecto-sp13_S_contig11556.1355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
MGRRMGIKGVDSWTTWQDADDFQAAYAEEHFRFAASNTAVAGVTVDLFVS
LVPSKALQSAARWGVYALIDPPLLKAFGFPTAPTLLQWFMKGSLWMRALF
IRFLLPPRPDFMAVRRTPLSGVAEGESSSDALVKPVYDPFHDVQLGCLYY
RDGYKIEDLGPATCPAGRLFEGLPSYTGKGGGGSGPVICGADGTSPLAVN
AAGKAKDKSI*
back to top

mRNA from alignment at Ecto-sp13_S_contig11556:64..5374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11556.1355.1 ID=mRNA_Ecto-sp13_S_contig11556.1355.1|Name=mRNA_Ecto-sp13_S_contig11556.1355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11556:64..5374+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACGGGTGGCGACGCTGCACGGATTTGGAGAAGGAGGCGCTGTTGGC ACACTACGGGGAGATGGGGAGGCGCATGGGCATCAAGGGCGTAGACTCCT GGACGACTTGGCAGGACGCCGACGACTTCCAGGCGGCCTACGCGGTGCGT GAAGCGCTCGATAGGAGTCGTCGTTGTTTTGAGTTGATTCCTCGTCGGTT GTGTTGTGTAGTGATTCGTTGTTTTTGTTTTAGGGCATGTGTGATTTTTG CGGTCGGTCGTGGTTTGTAGTAGTGAGTTCTGGCTGCTACTGCACGCTTA CACGGGGATTTCTTGGTGCCGCGGGGAGCTTGCGCCTGTACCCCTTGGGC TTCGGCCGGTTAGTGACCACGGTGACTATACTGCGGTGCAAAGTGAGAAC AAACCTGAGGAAAATAGAATAACCGACAACAGTTAGCCTCGCAACAAGCG ACGAAGGGTTAGGGTTAGGGTTCACCCTGATAGAAACAACAACAACAACA ACAGCACCAGGAACAGCAACAGCAACAGCAGCAACAAGCGACGGCAGTAA CAAGCGCCGCCGAAAAACCAACCCCGACCCCCGCCCCCAACCCCCAACCC CGAACTCCACCAACAGGAGGAGCACTTCAGGTTCGCCGCCAGCAACACCG CCGTCGCCGGCGTGACGGTCGACCTCTTCGTCTCTCTCGTGCCCTCCAAG GCTTTGCAATCGGCCGCTCGCTGGGGCGTGTACGCGCTGATAGACCCGCC CTTGCTCAAGGCCTTTGGCTTTCCTACGGTAGGTAGTTTTTTTGGGGTGC TCGAGGGGGGCGGCAGTAGTCTACGCAGGTTTTTGTAAAGTATGTTAAGC AAACTTGCTGGGTTAAGTTAGAATCAGCTAAGCTGGGGTAAGGGATACGG TTAGGTTCTGCGTGCCCCCTCCCCGGCCTTTTTTAGTGGTACAGTTACCT TTCTTTGCGTGGGCAGTCCAAGGCGGGAGACACGGGTGTCTAAGAGGCGT TTTTCGGTCGGGATGCGTTCGAGGCGCCGTGAGGGGAGAGGGGATGAGAG CGCGCGCCACAAGAGTAGTTCGTCCTCGTTGTAAGGGACCAGGGGGGAAG GAAACTCTGTGACGCACGTCGCGTTCAGTTGGGGAGGGGGTGGTACCGTA GGTGACAGAAGACATCACCCCCCCTGGCTCGACTACTCCACGACGATGTA TGTTCCATGCGATACGTTTTCGGAAAGCGATCCCTCCACGAGACGCTTCC AACGCCGCCATGATCGGCGCCAGCACTGTTTCTCCTGTGTATCAATCGAG CTTCGAAAACCGGCCCAGGGGATGTGATACCTTTTGTCACCTACGGTATT GACGTTTTGATCGAGTCGTCCACGAAGGATCCATCGACGGCGTTCATGAG TGACTGTCGATCGCGGTTGATCTTGTGCTGACTCGAAGTTGTCGAGGGGT TGCGTCGCGGTGGTCGAGAAAAAAAAAACATGTCCAAGGCCCGCTTTCCA TTTTGATTGTTTGCTCGCAGGCACCGACCCTCTTGCAGTGGTTCATGAAG GGCAGCCTGTGGATGCGCGCGTTGTTCATCCGCTTCTTGCTGCCGCCTCG CCCCGACTTCATGGCCGTCCGGCGCACTCCCCTCTCGGGCGTCGCAGAGG GTGGTGAGTTTTCATAAAACGCGGCATAATACTGGTGAAGATAGTGGGGG GACTTCAACAGTCCGGTTAACTAGAAGTGCAAAGTGCTCGGTATGCAAAG ACAGTGCCGATGAAATCACACGACAAGAGACTGAACGTTGAAGTTGTCTC GTTCTCTGGGTAGTGGCGAGTGCCGCCTGGTATTGTGCCGTTGAATCTGG CGGGCACATGCCGGCACTACCGAGGGACCGCCACTGAATTTTCACAAGAA ACCAGATAGATCTCTCTCGTCTCGTGAAAAATTTGTCGCGCTTAGGGTAC ATTCACCTCTCGATATATTGCTGCCCATCCCCTACCATCACCGATCCCCT CCCCGGCGCCCTGTGCCGGACGCCCTTGTTGTGTCCCAGAAAGCTCTTCC GATGCCCTCGTGAAGCCGGTTTATGACCCATTCCACGACGTTCAGCTGGG CTGTTTGTACTACCGGGACGGGTAAGCGAGCCAGCCAGGAGAGAGATCCG TCGCACGTCAATCACGCGTGCTTGATTTTTTTCCGCTTGTTGTGTTGTTT GGCAATGACTTTTACCGATGTAACGCGTTCATCCTACGGGGCGGCTCGTT CATTCGTTTGGCCGCGTACGTGGGAGCGGCCGTCGATGATGGCCCTCGTC TCGGTGTGAAGTTTTGATGTTGACGTCGGTACTTTTGCGTTTTGCAAGAG AAAGAGAGAAGGGAAGACTTGTAGTTCAAGAAGCAATGTGTCTTCACACG AGAAAGTCCGAACATGCCGAGAGGCCGGGAGCGTTCTTGTGTACCTTTTT CTTCACCTCCCCCTCTTTGTGTACCTCTTTTCCTCCGATCCCGTTCGTGA TCATACACCACCTCCTCTCTCCGTCACTTGATTGCGAGGGAGATTGTCCT CGAAGTTATCGGAGCCGTCCTCACCGCCGGTCTATCCGCAGCGTGGGAAG CTAAATATCTCGCCCTCGATGCGACTCGCCGAACCCTCCACGGTGCTTGT GGATTGGTCCCTCTCGTGATTGGTGGGCGAATCCCAGTGATGCGCCCCCT CCCCGGGCTTGGTAAATAGGGACCGTCTAGCAGATGACCAGCGTCTGGTT CATCTTTGTGAACCGTAGCCTGGGCTGGCGAAATCCGGCATAATGCTCCG TCCCGGCATTGTAGGGATGCGAGGTCGACGGCCTAATGACTACGGCATGC GTTTACATGAGTAAGCCCCCCCCCCCCCCCCCCTAGCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCACCACCTCCCCCCCCCACCCCCCCCCAAAA AAANNNNNNNNNNATTCCCCCTCCCCGCCTTTTTGGGGGTGCGGGTGCCC CGCCCTAATCCCCCCGGCACGCGTTTCCATAGTTAAGCCCCCCCCCCCCA GAGTATGCCCCCCCCCCCCCCGCCTCCTTCCCACGCCTGCGACGAACGGT CTCCGACAAACCCCGTACAAATACAACACTGGCAGGTATAAGATCGAGGA CCTAGGACCCGCGACGTGTCCCGCCGGACGCCTGTTCGAGGGGCTGCCTT CCTACACCGGCAAGGGCGGCGGCGGCAGCGGCCCCGTGATCTGCGGGGCG GACGGGACCAGCCCGCTCGCCGTCAACGCGGCCGGAAAGGCCAAGGACAA ATCCATCTGAAAAAAAACGATCGAGGATCTTGGAGGCCACCCTCCCGTAA GCAAATCGTACTCAGAGATGACAAAGGGAGACAAATATGTATCGGTTCTT CTGCTACACTACAGCATGCTTGCTGTTCAGATGCGGCGCGGAGGTTGTTG CACTGAGAACCACCAGCCGGGCATGAAATCCTGGATTTTGTGCGATGGTG GGTCCTGGAATTTTCATGCGACGTCTGACGCGACCGACTGACGTATTTTT TTCCCGGGAAGGTCATGTCCGAGATGTCGGAGAACAAGTTAGAGAAGAAG TTGAGCCCTCTGTTGTGGTGAATTGCGACTTGCGCTCCTGATGGTCTTGC CGCATACAATAGAAGAGCCCGAGGAGCCACGGAAAAAAGCGCCCTGAGCC TCTTTGCTAATGAAATGACGGGCGGCTTACGCGCACACACGTCACTAGAT GGTTGGTTTTGTGGTAGGGAGGGGGGTAGGTCGGACAAGCCACCCAGGGT TGTGAGTGTAATTGCGTGGGTATATTGTTTTTAAGGTGTGGCACCCACGT CGATTAGCTACAGCTGACAAAGGGGCGTCAACCGTAGCGGGGCACCCATA CATAGATATGTAGTGTGTTTGTCTTTCCTTGTGGGCATCGCCCGTAGGTA CCGACCGACAGTGGAAAGACGGAAGTCTCAGTAGGACAAAAGATGGAGAA CGCTTTGAAAGGCCATGATCTGGGGAGCCGTGAGTGTCTGCGTGTGTCTT TGAGTAGCGCCCACGGCGCTAACTGGCTCGCCGATGGGAAGGCGACAGTC TCGTGCGTGCGTAGTCTGCGTTTGATACTGGCGTCGACACCGCCCCGCGG TCGACCGTGAAAAGACGTCGTCAAAGTGCCAAGCGTATTAACATCATACT GCTGTAGTCCGTGCGGAAGAGGGGACTTGGTATATGTTTGTGGGGTGACT CTCACGCGCGCTCTCTCGCTCTCTCTCGAAAAGGATGTTTCGTTCTTTCG TTGCTAGCATGGGCAGCGCTCCTCCGCTGATAATGAAAGTACGTCAGTGC CGACGGATGAGTATCATTGCATTTGTCTCCGAAAGGGGAACTCCGTATTT TTGTGGGCAGATTCCCACGCGCGTTCTTTGTCAGGCATTTGTGGGTGGGG AGGGTTCACGGAGCGCGGGGGGGTAGTATGCTCAACGCACACACGTCAGT CAAACTTGGTGTGATTCCTTGCTTTTTTTGGTATGATACGCAAAGCTTGC GGGATAATTTTAGAGAACGGGGGAGGGTACGACGGGAGGGGAACCCATGG TAGTGCATGACTGCAACCTCCATGGGAAGAGAGAGGGGGGGGCGTGTTCG AGAGAGCGGGGAGTCTCTCGTTGCAGAGCCGTAGGAGACGGCATGTATAG TATGATGTCGTATGTCGAGGACTCTATTTAGTCATCCTCATAGTCTGAAC GCGCCGACGTTTGCACGTTTGGGTGTGTTTTTTGGGCGTATCAGGTGGCG TCACATTGCCCCGATGGTCTAGTGGGTAGCCACGCAACGCGCTCCGGACC AGGTCATGGGTACAAGTCCCGGCAAGTTGGGTTTTTTTCACTGAAATAAA TCCTGGGCTGAGTCGGAAGCGACGCGCTGCAAAGCTCGTTGTTAGTAAAC TTGATCGACTTCTAAAGTCGCGAGGGAAGGGATCGCTGTACCTTTCTCGC GATAAGAATTTCTCAGGCAGGAACCGCAAGAGGGGTCCAGGCCCCCCTCC TATGACCCCAGTTGGGTCGTCTAGCTAGTACAAGTGGGGAATGGGGGCTA GAGAGGCAGACGACAGAGTCCAATAATGAGAAACAACACACACACACGCA CAGAAATCTACTCCTAATCGAACTCGAGTACTCAGCAAGAGCCTTGGTAG ACGCATGCAGTTTTCTTCTGTAGCTGCTGTTTCTGTTTTTGATCCGAAGG ATACTTTTAGCCTCCCCCATGCTGCCCCCGCACGGGGTCCCAGTTCATGG TAGATAGAAGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11556:64..5374+

>mRNA_Ecto-sp13_S_contig11556.1355.1 ID=mRNA_Ecto-sp13_S_contig11556.1355.1|Name=mRNA_Ecto-sp13_S_contig11556.1355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11556:64..5374+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGGCGCATGGGCATCAAGGGCGTAGACTCCTGGACGACTTGGCA
GGACGCCGACGACTTCCAGGCGGCCTACGCGGAGGAGCACTTCAGGTTCG
CCGCCAGCAACACCGCCGTCGCCGGCGTGACGGTCGACCTCTTCGTCTCT
CTCGTGCCCTCCAAGGCTTTGCAATCGGCCGCTCGCTGGGGCGTGTACGC
GCTGATAGACCCGCCCTTGCTCAAGGCCTTTGGCTTTCCTACGGCACCGA
CCCTCTTGCAGTGGTTCATGAAGGGCAGCCTGTGGATGCGCGCGTTGTTC
ATCCGCTTCTTGCTGCCGCCTCGCCCCGACTTCATGGCCGTCCGGCGCAC
TCCCCTCTCGGGCGTCGCAGAGGGTGAAAGCTCTTCCGATGCCCTCGTGA
AGCCGGTTTATGACCCATTCCACGACGTTCAGCTGGGCTGTTTGTACTAC
CGGGACGGGTATAAGATCGAGGACCTAGGACCCGCGACGTGTCCCGCCGG
ACGCCTGTTCGAGGGGCTGCCTTCCTACACCGGCAAGGGCGGCGGCGGCA
GCGGCCCCGTGATCTGCGGGGCGGACGGGACCAGCCCGCTCGCCGTCAAC
GCGGCCGGAAAGGCCAAGGACAAATCCATCTGA
back to top