mRNA_Ecto-sp13_S_contig100980.130.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100980.130.1
Unique NamemRNA_Ecto-sp13_S_contig100980.130.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.140e-56
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1
Query:    1 LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQV R
Sbjct:   90 LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVGR 180          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A835YJM0_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM0_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.090e-30
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   10 GLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            G+R L   PP YVV+ F S  EC+ LI  A  +M  SPVVG G GE+S SRTS+SC+ AREDLP++CHKV  LTGKP +HLELPQV R
Sbjct:   16 GVRQLHGHPPFYVVEGFLSTQECEGLIRQADGFMCTSPVVGKGNGEISPSRTSTSCYFAREDLPSICHKVCMLTGKPADHLELPQVGR 103          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A8J2S9J3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.460e-29
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            YPGL  +   PP++ V  F S  ECD LI  A  +M  +PVVGAG GEVS SRTSS+C+LAREDLPT+C KV ALTG P+EHLELPQV R
Sbjct:   38 YPGLTAVHTDPPVFTVAIFLSEAECDDLINSAQGHMTPAPVVGAGNGEVSVSRTSSTCYLAREDLPTICTKVCALTGCPVEHLELPQVGR 127          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S2UA87_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA87_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.250e-29
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            YPGL  L  +PP++ VD+F S  ECD LIA + +    +PVVG G GEVSE+RTSS+C+LAREDLP   +K+MALTGKP+EH ELPQ+ R
Sbjct:   59 YPGLHVLNSSPPVFCVDNFLSPEECDFLIASSLDSFAPAPVVGKGGGEVSETRTSSTCYLAREDLPLYMNKIMALTGKPLEHCELPQIGR 148          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: F0Y4P1_AURAN (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P1_AURAN)

HSP 1 Score: 111 bits (278), Expect = 5.330e-29
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   34 PPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            PP+Y V +F +  ECDALI  A ++M  +PVVG G GEVS SRTSS+C+LAREDLP+VC KV ALTGKP+EHLELPQV R
Sbjct:    1 PPIYTVQNFLTEEECDALIDSAKDHMTPAPVVGPGNGEVSVSRTSSTCYLAREDLPSVCTKVCALTGKPLEHLELPQVGR 80          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S4N7N8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7N8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.480e-27
Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    7 PGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            PGLR L   PP++ VDDF S  ECD LI  A + +  +PVVG G GEVS++RTSS+CFLAREDLP    KV ALTGKP  H ELPQV R
Sbjct:    9 PGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGR 97          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A6U6I918_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6I918_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.860e-27
Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            YPGLR L   PP++ VDDF S  ECD LI  A + +  +PVVG G GEVS++RTSS+CFLAREDLP    KV ALTGKP  H ELPQV R
Sbjct:  148 YPGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGR 237          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S2YBM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBM7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.760e-27
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            YPGLR L  +PP++ VD+F +  ECD L+ +A +    +PVVG G GE+S SRTSS+C+LAREDLP +  KV  LTGKP++H ELPQV R
Sbjct:   26 YPGLRVLNTSPPMFCVDNFLTPFECDFLVQVAQDSFGPAPVVGKGVGEISPSRTSSTCYLAREDLPDLLRKVSLLTGKPMDHCELPQVGR 115          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A7S1UYE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYE3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.580e-27
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRR 273
            YPGLR L  TPP++ VD+F S  EC  L+ +A +    +PVVG GAGEVS SRTSS+C+LAREDLP    KV  LTGKPIEH ELPQV R
Sbjct:  184 YPGLRLLNATPPIFAVDNFLSPFECQFLMEVAQDSFGPAPVVGKGAGEVSPSRTSSTCYLAREDLPDYLRKVSLLTGKPIEHCELPQVGR 273          
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Match: A0A6V2IM91_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IM91_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.330e-26
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    4 YPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVR 270
            YPG+R +  +PP++ VD+F +  EC  LI  A +    +PVVG GAGE+S+SRTSS+C+LAREDLP    KV ALTGKP+EH ELPQVR
Sbjct:  188 YPGVRMIHSSPPIFTVDNFLTTEECHFLIHSATDSFGPAPVVGKGAGELSKSRTSSTCYLAREDLPEYMMKVTALTGKPMEHCELPQVR 276          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100980.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K6_ECTSI1.140e-5698.90P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YJM0_9STRA2.090e-3061.36Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A8J2S9J3_9STRA1.460e-2963.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UA87_9STRA4.250e-2960.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
F0Y4P1_AURAN5.330e-2967.50Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S4N7N8_9STRA1.480e-2761.80Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U6I918_9STRA1.860e-2762.22Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2YBM7_9STRA4.760e-2756.67Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1UYE3_9STRA5.580e-2762.22Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6V2IM91_9STRA1.330e-2658.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100980contigEcto-sp13_S_contig100980:37..333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score188.0
Seed ortholog evalue2.2e-45
Seed eggNOG ortholog2880.D7G2K6
Model size297
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
Cds size297
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462507.584365-CDS-Ecto-sp13_S_contig100980:36..3331681462507.584365-CDS-Ecto-sp13_S_contig100980:36..333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100980 37..333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100980.130.1prot_Ecto-sp13_S_contig100980.130.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100980 37..333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100980.130.1

>prot_Ecto-sp13_S_contig100980.130.1 ID=prot_Ecto-sp13_S_contig100980.130.1|Name=mRNA_Ecto-sp13_S_contig100980.130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEV
SESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVRRCVVGSLV*
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mRNA from alignment at Ecto-sp13_S_contig100980:37..333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100980.130.1 ID=mRNA_Ecto-sp13_S_contig100980.130.1|Name=mRNA_Ecto-sp13_S_contig100980.130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100980:37..333- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTACCCGGGGCTCCGCAATTTGCGAGAGACACCACCCCTGTACGTGGT GGACGACTTCTTCAGCGGCCCCGAATGTGACGCCCTAATAGCCTTGGCCG GGAACTACATGATCGTTAGCCCTGTGGTCGGGGCCGGCGCCGGGGAGGTG AGCGAGAGCAGGACTAGCAGCTCGTGCTTCCTGGCGAGGGAGGACCTTCC GACCGTGTGCCACAAAGTGATGGCCCTAACGGGAAAACCCATCGAGCACT TGGAGCTCCCGCAGGTACGTAGGTGTGTGGTGGGGTCTCTTGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100980:37..333-

>mRNA_Ecto-sp13_S_contig100980.130.1 ID=mRNA_Ecto-sp13_S_contig100980.130.1|Name=mRNA_Ecto-sp13_S_contig100980.130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100980:37..333- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTACCCGGGGCTCCGCAATTTGCGAGAGACACCACCCCTGTACGTGGT
GGACGACTTCTTCAGCGGCCCCGAATGTGACGCCCTAATAGCCTTGGCCG
GGAACTACATGATCGTTAGCCCTGTGGTCGGGGCCGGCGCCGGGGAGGTG
AGCGAGAGCAGGACTAGCAGCTCGTGCTTCCTGGCGAGGGAGGACCTTCC
GACCGTGTGCCACAAAGTGATGGCCCTAACGGGAAAACCCATCGAGCACT
TGGAGCTCCCGCAGGTACGTAGGTGTGTGGTGGGGTCTCTTGTCTGA
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