mRNA_Ecto-sp13_S_contig11411.1244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11411.1244.1
Unique NamemRNA_Ecto-sp13_S_contig11411.1244.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11411.1244.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 1.100e-76
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1 
Query:   37 GTSVLSVAGEAGLFWEVESRLWLLLGPFGTVGGLELDEEEARSSVHLCRGLSGLHLLPALTRNLGILLTARAIRKLQESGVVSRIKLSHVDHRTGGPAAVGPARFKGLGEEAAAVKRRLRDKCRRRWVATRGSA 438
            GTSVLS+AGEAGLFWEVESRLWLLLGPFG VGGLELDEEEARSSVHLCRGLSGLHLLPALTRNLGILLTARAIRKLQESGVVSRIKLSHVDHRTGGPAAVGPARFKGLGEEAAAVKRRLRDKCRRRWVATRGSA
Sbjct: 1028 GTSVLSMAGEAGLFWEVESRLWLLLGPFGAVGGLELDEEEARSSVHLCRGLSGLHLLPALTRNLGILLTARAIRKLQESGVVSRIKLSHVDHRTGGPAAVGPARFKGLGEEAAAVKRRLRDKCRRRWVATRGSA 1161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11411.1244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS90_ECTSI1.100e-7698.51eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11411contigEcto-sp13_S_contig11411:3280..4662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score259.6
Seed ortholog evalue8.8e-67
Seed eggNOG ortholog2880.D8LS90
Model size447
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2S0QB@2759,COG5184@1
Cds size444
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462598.3205698-CDS-Ecto-sp13_S_contig11411:3281..34381681462598.3205698-CDS-Ecto-sp13_S_contig11411:3281..3438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11411 3282..3438 -
1681462598.3300447-CDS-Ecto-sp13_S_contig11411:3774..39771681462598.3300447-CDS-Ecto-sp13_S_contig11411:3774..3977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11411 3775..3977 -
1681462598.3406332-CDS-Ecto-sp13_S_contig11411:4578..46621681462598.3406332-CDS-Ecto-sp13_S_contig11411:4578..4662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11411 4579..4662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11411.1244.1prot_Ecto-sp13_S_contig11411.1244.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11411 3282..4662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11411.1244.1

>prot_Ecto-sp13_S_contig11411.1244.1 ID=prot_Ecto-sp13_S_contig11411.1244.1|Name=mRNA_Ecto-sp13_S_contig11411.1244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
AEGAGHRRSPSGGTSVLSVAGEAGLFWEVESRLWLLLGPFGTVGGLELDE
EEARSSVHLCRGLSGLHLLPALTRNLGILLTARAIRKLQESGVVSRIKLS
HVDHRTGGPAAVGPARFKGLGEEAAAVKRRLRDKCRRRWVATRGSAAA
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mRNA from alignment at Ecto-sp13_S_contig11411:3280..4662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11411.1244.1 ID=mRNA_Ecto-sp13_S_contig11411.1244.1|Name=mRNA_Ecto-sp13_S_contig11411.1244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1383bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11411:3280..4662- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGGTGCGGGTCATCGTCGGTCGCCTTCGGGGGGGACGTCGGTGTT
GTCTGTGGCGGGCGAGGCGGGCTTGTTCTGGGAGGTGAGATCCTGCTGTT
GCTACCCGCGCTGGTAGATAGTGTTGGTGTTTCCTGATGTGGGCGTGTGT
GGGGGAGGAGCGGGGGATGGGGTTGTGGGCGGTGACGGTGGGGGCGGCAT
GTCAGGCCTGGTCTGTCCCAGTTTTTCTCTGGTTTCCTTTTTCCTTTCGT
GTGGGTTCGTTTGTTTATTTTGTGAGTTTATGTCCAACATGATGAAAAGT
TTGGGGAATTAATTGGGGCCATTCTGTTTTCGCGACGTACGCTGACAGTC
CCTTGCACAGGGATTAAAGTTGGGGCGACGAAGTTTTGATTTGACGCCTT
CTGCGCTTGGAGGAAAGCCGAAAACAGCGGCGAGTGTGAACACGGGTCCC
GTTTTGCTGGTGAAGCTGCGTACTTAGCATACTACAGTCAGTCCTGCAGT
GTATTTGCTCTGTTTCTTGCATGGTCGCTGGCCAGGAGCCTTTTTATTCT
TCCCCCCGGAGCCCGCTTATTTCGTTCGTGCCTTCTCCATCTGTTTTTTT
TTTTCCAACGATGACACAACGAATCCATCTCTGTCTATTGAGAATATCTT
TTTTTATTGTATTTCCTCCATATCTAATACAAAAGGTTGAGTCCCGGCTG
TGGCTTCTCCTGGGACCGTTCGGGACTGTGGGGGGCCTGGAGTTGGACGA
GGAGGAAGCGAGGTCTAGCGTACACCTCTGCCGGGGGCTGTCCGGGCTGC
ACCTGCTGCCGGCGCTCACGCGCAACCTCGGGATATTGCTGACGGCGAGA
GCCATCCGAAAGCTGCAGGAGAGCGGCGTGGTATCCAGGTGCTTATACAT
TTCTTTCTTGTTTTCTTGCTTGCACACAACGAGTCTATCTCTAAATTCAG
ACGAGAGTCCAGTTTTTTGTTTTGTTTTTTATCCTTGCGAGGTATGGTGC
ACGCGTCACGTGTGTACGTACAAGGGGGGTCATCGACAGCACTTCTGTTA
ACTCTCTTTACACATCCGATGCTTGCAATTGCTTCAAAAAAATTTGCTGA
ACTCTTTACACATCCGATGTTTTCAATTGTTTAAAAAAAATTTGCTGAAC
TCCAACAAAAACAAAAAAAAACAAAACCCCCCCCCCCCCCCCCCCCCCCT
CAAACTAAAAATAAACACCAACAGGATCAAGCTTTCCCACGTCGACCACC
GAACCGGGGGCCCCGCTGCCGTAGGCCCCGCCCGCTTCAAGGGCCTTGGG
GAGGAGGCCGCCGCCGTCAAGAGACGCCTCCGAGACAAGTGCCGTCGCCG
ATGGGTCGCGACCCGCGGCAGCGCCGCCGCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11411:3280..4662-

>mRNA_Ecto-sp13_S_contig11411.1244.1 ID=mRNA_Ecto-sp13_S_contig11411.1244.1|Name=mRNA_Ecto-sp13_S_contig11411.1244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11411:3280..4662- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGGTGCGGGTCATCGTCGGTCGCCTTCGGGGGGGACGTCGGTGTT
GTCTGTGGCGGGCGAGGCGGGCTTGTTCTGGGAGGTTGAGTCCCGGCTGT
GGCTTCTCCTGGGACCGTTCGGGACTGTGGGGGGCCTGGAGTTGGACGAG
GAGGAAGCGAGGTCTAGCGTACACCTCTGCCGGGGGCTGTCCGGGCTGCA
CCTGCTGCCGGCGCTCACGCGCAACCTCGGGATATTGCTGACGGCGAGAG
CCATCCGAAAGCTGCAGGAGAGCGGCGTGGTATCCAGGATCAAGCTTTCC
CACGTCGACCACCGAACCGGGGGCCCCGCTGCCGTAGGCCCCGCCCGCTT
CAAGGGCCTTGGGGAGGAGGCCGCCGCCGTCAAGAGACGCCTCCGAGACA
AGTGCCGTCGCCGATGGGTCGCGACCCGCGGCAGCGCCGCCGCC
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