mRNA_Ecto-sp13_S_contig11406.1235.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11406.1235.1
Unique NamemRNA_Ecto-sp13_S_contig11406.1235.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: A0A6H5KWJ5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ5_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 4.630e-65
Identity = 109/115 (94.78%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:    1 RYMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAPTRVPMEAQGIYS--SDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPFFAA 339
            RYMAPEIWNNQEYDGRQIDIWSVG TLLVCLLGDYPW APTRVPMEAQ IY   SDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPFFAA
Sbjct:  249 RYMAPEIWNNQEYDGRQIDIWSVGVTLLVCLLGDYPWQAPTRVPMEAQEIYRRVSDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPFFAA 363
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: D7FM76_ECTSI (CBL-interacting serine/threonine-protein kinase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM76_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.700e-15
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RYMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAPTRVPMEAQGIYS 156
            RYMAPEIW N+EYDGR  DIWSV  +LLVCL+G+  W APTRVP+  +GIY+
Sbjct:  184 RYMAPEIWENREYDGRSADIWSVAVSLLVCLVGEEQWKAPTRVPLGDRGIYT 235
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: A0A1J4JD13_9EUKA (CAMK family protein kinase n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4JD13_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 2.940e-7
Identity = 35/110 (31.82%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 YMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAPTRVPMEAQGIYSSDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPFF 333
            Y APEI N Q Y+G + DIWS G  L   +   +PW+ P   P E            T + +    ++  ++ +   I+    +L+  ML  D  LRPS+ ++L QHP+F
Sbjct:  172 YAAPEIINEQPYNGMKADIWSAGIVLYAMICCHFPWSTPEDAPPE------------TVMHETVKQILEGQIEIPDGITFELQNLMTNMLNTDPELRPSAEEIL-QHPWF 268
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: A0A1J4J6P9_9EUKA (Protein kinase n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4J6P9_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 5.410e-6
Identity = 35/110 (31.82%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:    4 YMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAPTRVPMEAQGIYSSDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPFF 333
            Y APEI N Q Y+G + DIWS G  L   +   +PW+     P E+          + T++Q    ++  ++ +   I+    +L+  ML  D  LRPS+ ++L QHP+F
Sbjct:  172 YAAPEIINEQPYNGMKADIWSAGIVLYAMICCHFPWSTQDDAPPES--------VMHETVKQ----ILEGQIEIPDDITFELQNLMTNMLNTDPDLRPSAEEIL-QHPWF 268
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: A0A2I0AXG5_9ASPA (Serine/threonine-protein kinase SAPK6 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AXG5_9ASPA)

HSP 1 Score: 57.0 bits (136), Expect = 2.030e-5
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 YMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAP 120
            YMAPE+++ QEYDG+  D+WS G TL V L+G YP+  P
Sbjct:  178 YMAPEVFSQQEYDGKMADVWSCGVTLYVMLMGSYPFQDP 216
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: A0A068WPT6_ECHGR (Maternal embryonic leucine zipper kinase n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=A0A068WPT6_ECHGR)

HSP 1 Score: 57.4 bits (137), Expect = 2.700e-5
Identity = 39/111 (35.14%), Postives = 51/111 (45.95%), Query Frame = 1 
Query:    4 YMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPW--AAPTRVPMEAQGIYSSDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPF 330
            Y APE+  NQEY+G   DIWS+G  L   L G  P+  + P ++P   +G YS D                        +SA   DLL QML VD   R S  +L + HP+
Sbjct:  178 YAAPEVLQNQEYNGPAADIWSMGVILYAILCGSLPFDPSKPEKLPKLIKGQYSVD----------------------ESLSASGRDLLAQMLCVDPTARISMMEL-STHPW 265
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: J9EXB7_9SPIT (Protein kinase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9EXB7_9SPIT)

HSP 1 Score: 55.8 bits (133), Expect = 8.240e-5
Identity = 33/106 (31.13%), Postives = 53/106 (50.00%), Query Frame = 1 
Query:    4 YMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAPTRVPMEAQGIYSSDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQ 321
            YMAPEI   +EYDGRQ+DIW++G  L   L G +P+          +GI   D+Y           +   +  +   +S  A  L+ +ML VD + R ++ +L+ +
Sbjct:  552 YMAPEIVQKKEYDGRQVDIWALGVLLFAMLTGTFPF----------RGISEQDLYYK---------IQRGQFKIPDTVSKEAKRLIYRMLEVDAKRRITARELIRE 638
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BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Match: A0A3B6RPN5_WHEAT (Protein kinase domain-containing protein n=10 Tax=Triticum TaxID=4564 RepID=A0A3B6RPN5_WHEAT)

HSP 1 Score: 54.7 bits (130), Expect = 9.380e-5
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:    4 YMAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAPTRVPMEAQGIYSSDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSAQLLAQHPFF 333
            Y+APE++  +EYDG+ +D+WS G TL   L+G YP+  P   P+  + I    I    ++E      + D L+    ISA   DL+ ++ V D   R +  ++   HP+F
Sbjct:  157 YIAPEVFQQREYDGKIVDVWSCGVTLYAMLVGAYPFQCPDDEPINFRKI----IQRIQSVEYS----VPDDLH----ISAEWRDLISKIFVADPAARITVPEI-RNHPWF 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11406.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KWJ5_9PHAE4.630e-6594.78Protein kinase domain-containing protein n=2 Tax=E... [more]
D7FM76_ECTSI6.700e-1567.31CBL-interacting serine/threonine-protein kinase 1 ... [more]
A0A1J4JD13_9EUKA2.940e-731.82CAMK family protein kinase n=1 Tax=Tritrichomonas ... [more]
A0A1J4J6P9_9EUKA5.410e-631.82Protein kinase n=1 Tax=Tritrichomonas foetus TaxID... [more]
A0A2I0AXG5_9ASPA2.030e-556.41Serine/threonine-protein kinase SAPK6 n=1 Tax=Apos... [more]
A0A068WPT6_ECHGR2.700e-535.14Maternal embryonic leucine zipper kinase n=1 Tax=E... [more]
J9EXB7_9SPIT8.240e-531.13Protein kinase domain containing protein n=1 Tax=O... [more]
A0A3B6RPN5_WHEAT9.380e-532.73Protein kinase domain-containing protein n=10 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11406contigEcto-sp13_S_contig11406:2085..4940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score227.3
Seed ortholog evalue3.7e-57
Seed eggNOG ortholog2880.D7FXV9
Model size1098
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0583@1,KOG0583@2759
EC2.8.1.8
Cds size336
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.6787186-UTR-Ecto-sp13_S_contig11406:2084..28401681462597.6787186-UTR-Ecto-sp13_S_contig11406:2084..2840Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11406 2085..2840 -
1681462597.709843-UTR-Ecto-sp13_S_contig11406:4934..49401681462597.709843-UTR-Ecto-sp13_S_contig11406:4934..4940Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11406 4935..4940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.6892183-CDS-Ecto-sp13_S_contig11406:2840..30271681462597.6892183-CDS-Ecto-sp13_S_contig11406:2840..3027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11406 2841..3027 -
1681462597.6993635-CDS-Ecto-sp13_S_contig11406:4785..49341681462597.6993635-CDS-Ecto-sp13_S_contig11406:4785..4934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11406 4786..4934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11406.1235.1prot_Ecto-sp13_S_contig11406.1235.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11406 2841..4934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11406.1235.1

>prot_Ecto-sp13_S_contig11406.1235.1 ID=prot_Ecto-sp13_S_contig11406.1235.1|Name=mRNA_Ecto-sp13_S_contig11406.1235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MAPEIWNNQEYDGRQIDIWSVGATLLVCLLGDYPWAAPTRVPMEAQGIYS
SDIYSYTTLEQHGAGVMLDRLNLTSRISAGAVDLLCQMLVVDRRLRPSSA
QLLAQHPFFAA*
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mRNA from alignment at Ecto-sp13_S_contig11406:2085..4940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11406.1235.1 ID=mRNA_Ecto-sp13_S_contig11406.1235.1|Name=mRNA_Ecto-sp13_S_contig11406.1235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11406:2085..4940- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACATGGCGCCGGAGATCTGGAACAACCAGGAGTACGACGGGAGGCA
GATTGATATCTGGTCCGTCGGAGCCACACTGCTGGTGTGTCTGCTAGGAG
ACTACCCGTGGGCGGCACCGACGCGTGTACCGATGGAGGCACAAGGGATC
TACAGGCGAGTGTGCTCGAGTAGGTTTTTCTGTCACTTGGGAGGCAGCTT
CGCTCTGCCACAGTTTAGCTGGGGGATATCAAATCGTGTCGTGGTTGCCG
TCAGCTGGGGGATATCAATACGTGTTGTAGGGACTCGTAAATGTTTTTAA
ATTTGTGTTTTTTTTGTGTGCTGTTGCGTGTGTAGCCACGGGTGTATGCC
CGACCGGTGCGTGTACCGACACGATATGTACTCTTGCGTCCTTGCTGCTC
GGAGGTAGGTCTGTTTGGTGATTGCGAGGTGGTAATCGGGACCTTTTCTG
GTCGTACAGCACACCGACATTGTTGCTCGGACGAACGTGAGCCTGCGCCA
TTCAGCCGGAGCAACATTCCCCTCAAGTTCTAGAAACCGGAAAGACAACA
ACTATTTCCAGCCATTGGCCCTTTTTCAGTGTGTCCCACACGGAACGGAT
AGGTCAAGCTCGGTCCCAATATGCTCCTAGCATGATATCGGTCCTTTCGC
AAGCACCGTCGTTGTCGTCAATACGCCAGAATCAATCACTGCGAAGGAAT
TTAAGCAAGCAGTAAGCCGGCGGTCTGTGTTATTACCGCGGTTTGTTGCA
CTTCCCTTCCTGGCCTTCCCAGCATGGGCCTTTGCAGATCTTATGAAAAG
TGGTAGAATGAATCTATGCTTTAGCATTCAGCAGTCTTGTGCCTTTTCAC
AGCCTGCTCTCTCGTGAGCCCGATTTATTTTCGGAGTCTGTAAGTCTGAA
CCGGCTCCCGAGAGTATCGCGCCGTGCGGTGCGCTGTGTGAAGAGATGCT
CGCGCTGGACCGCCGGCGTACTGTTCTTGAAACGAACCTTTTTGGTTCTC
TCTGGTTCTCTTTGCGGGTTTGTATGACGTCATATTCCGCTTGGGTCATA
AATGACGAAGGGAGTCGCAACATACCATATCTGCAGCGTATCTCTACCTC
GCTCATAGCTGGCAGCAGTCTCTACCTCCCACAACTCTCAGTCTTTCTTT
CCTGCCTGCGGCTCGCGGGGGGGAATAATGTACGCACAACGGGCCCGCCC
TGCGTCGTGCACTGGTGTGCCTTGATAAATACCCGCACGGACACGGACAT
TTTCGTCCCCAAGTAGATATAAAAGTAGGTCTTTCTTGCTGTCGATCTGA
TGTGTTTGGCAACGAATTTCAACTGGCGTGTGTGTGAATCTGTACCAGGT
AGGATATATCTTGCCATACCTCCCCTGCACAGCATAGATATATACCACTA
GTTGTAAGGTAACCTCTTGTACATCGCCACGAGATGGTACACAAGCAGTT
TAAGCCACGCACGGTGTGTTGTGGACTATCGTGCTGCTGCAGCATTGATG
CTGCTGTAGAGCCTAGCGGGGAAACACATCTTCCTGAACATGAGAAGAGA
ACCAAAGAAACGCAGCTTGTTTGTATCTGTCCGATCCTTGATCTACGTAC
ACCACTTGCCGATGTCCTCAACACCTACACAGCACCATCAAGAACTTCCT
TCAATCATTTTACCTACAGGTATTACGCGAGACCGGCGCCCATAGGGGGG
GCGGGCGAAGCACCCCTTGTGAAATACTGTGGAAGTATGAAAATGAAAAA
TAAGAAAAGAAGAAATCAAAGCTTCAGTTTGTGCTGCATCCCTTCATCAT
CAACCTCTTGAGCGCTGCCGCACGCATTGTATATAGCAAGGTGTGTGAGG
ACGTTCTTTTTTTTGGGGGCTGCACTGACAAAAAACGTTCCCTGCCGCTC
TACGTCGACACAGTTCGGACATCTACAGCTACACGACCTTGGAGCAGCAC
GGGGCCGGGGTAATGCTCGATAGATTAAATCTCACGTCGAGAATATCTGC
AGGGGCGGTGGACCTCTTGTGCCAGATGCTGGTGGTGGACCGCAGGCTTC
GTCCATCCTCGGCGCAACTGCTAGCACAGCACCCATTTTTTGCGGCGTAG
TTGTTTGAGGTCGACATTGTTAGGCTTGGCGTTCGGCCAGGCCTGAGCGA
TGGCAGAAATAACCAACACACGGACGAGGGGTATTTTTTGGTGGCTGATG
TTGTCTTTGGAGAGAGAGGGCAGAGCACGGGGGAGGGAAGGGGATCCGAG
AGTGTCTCCGCGTCATATTAAGTATACCCGCAACCCGATAGACTAACGCG
TAGACATTGTTTGGTGTGATTTCTCTTTTTTGGTAAATACATGCATGTCC
CAAAGTAAGAAGTGTTTCGTGTGTTTCCCTTGATTGCGGAGTCGCTCTAC
ACGATTAGGTCCGCGGTTGGTTGGAAGTGGGCTTCCGTAAGATGTGCAGC
TGTTGGTGCGAGAGAAATGCGGGCTGTTTATTGTTGAGATGTAATTTAGT
GTGGTGCAATGGCCAATTTTTGTGAGCGTTCAAATTATGATGGTACTTGG
AAGGACGACATTTTCGTGGACGCATCCTCGGTCGGGCAACGATGGACATG
TCCGTGGACAGACCATGGGTGGTGCGGAATTTACCGAAACGCGCGCGCCC
GAGCAGTTGACTTATCCGTGGCAAGCAGGGCGGATCGTCTCGTGAGGTGG
TGTGTGTAAGAGACTTGAAGCGGACGACAGCCGCGTACCTAGATGGCGTT
TAGCACGGGCTTGTCAGGTGTGCTGAAACGAGAACGATTCGATCTCCGTC
TGCGGCTCGTGCGTATGCATGCGACAAGAGACAAAATGTGATGCGAGTGA
CGTCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11406:2085..4940-

>mRNA_Ecto-sp13_S_contig11406.1235.1 ID=mRNA_Ecto-sp13_S_contig11406.1235.1|Name=mRNA_Ecto-sp13_S_contig11406.1235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11406:2085..4940- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCGGAGATCTGGAACAACCAGGAGTACGACGGGAGGCAGATTGA
TATCTGGTCCGTCGGAGCCACACTGCTGGTGTGTCTGCTAGGAGACTACC
CGTGGGCGGCACCGACGCGTGTACCGATGGAGGCACAAGGGATCTACAGT
TCGGACATCTACAGCTACACGACCTTGGAGCAGCACGGGGCCGGGGTAAT
GCTCGATAGATTAAATCTCACGTCGAGAATATCTGCAGGGGCGGTGGACC
TCTTGTGCCAGATGCTGGTGGTGGACCGCAGGCTTCGTCCATCCTCGGCG
CAACTGCTAGCACAGCACCCATTTTTTGCGGCGTAG
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