mRNA_Ecto-sp13_S_contig11406.1234.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11406.1234.1
Unique NamemRNA_Ecto-sp13_S_contig11406.1234.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11406.1234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11406contigEcto-sp13_S_contig11406:102..1268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size674
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000240.1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.5983233-UTR-Ecto-sp13_S_contig11406:101..1301681462597.5983233-UTR-Ecto-sp13_S_contig11406:101..130Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11406 102..130 -
1681462597.6223023-UTR-Ecto-sp13_S_contig11406:562..7411681462597.6223023-UTR-Ecto-sp13_S_contig11406:562..741Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11406 563..741 -
1681462597.6447341-UTR-Ecto-sp13_S_contig11406:1234..12681681462597.6447341-UTR-Ecto-sp13_S_contig11406:1234..1268Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11406 1235..1268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.609719-CDS-Ecto-sp13_S_contig11406:130..5621681462597.609719-CDS-Ecto-sp13_S_contig11406:130..562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11406 131..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11406.1234.1prot_Ecto-sp13_S_contig11406.1234.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11406 131..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11406.1234.1

>prot_Ecto-sp13_S_contig11406.1234.1 ID=prot_Ecto-sp13_S_contig11406.1234.1|Name=mRNA_Ecto-sp13_S_contig11406.1234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
MKCRRLAILVIGRSTDPRDRVGLDGPQTAFPKKAIRRLANDLNIALDNIV
DWENAIGHRGGNGGPRAVRLLSKGFGMSDIEIVRECDDGFPVPIDGATTV
CARGETIGVVAVDTRTLSSRYMQRKFTKQATQCCCLGTHSCLR*
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mRNA from alignment at Ecto-sp13_S_contig11406:102..1268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11406.1234.1 ID=mRNA_Ecto-sp13_S_contig11406.1234.1|Name=mRNA_Ecto-sp13_S_contig11406.1234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11406:102..1268- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAAAAGAGAATACTTGGTCTCACGTTTGATTGGTGCGGCATTCGTGGT
TCCACGAGCGCGTGAGCAACCCTCATCCAAACCCAACAAGCCTTGTACGC
TTGCTGGTGGTGTAAAACTGACATGGCCGACTTACCCTCACAGTTCGGTA
TTTATCCAACACATGAACAAAAAAAAAAAACACTTCCATATAGTGCGGAG
GGGCCTTCCTTTGTCTACCACAAAAATAGCCGGGTTTCGGCGCCTGGATG
GCGTGTTTCGGGCGGATTTACCCAAACTCAACATTTTCATATTTTCATAT
TTTCACACGTTGACATTATAAGATTTACACTTTCCCAGAGCAGCGTCGCA
ACTTGACCTCTACCTCTGGGATGCCCCTACTATCACCATGTGCTGCCCCG
TACTATGTTCCAATGTATCGTCGGGTGAATCATGCTCACTGTATTGTCAG
CACATTTTACCTTGCCCCCACCCCCCCCCCGATCCCATGTGCCGCCCTTA
TGTCCCGCCCCTACTTGCTTGCTTCAGGTGAAACATCGCAATGAATGATG
GTTCACCTTAAAGCCAACGATAACAGCGGAGGAGGTGGCAACTGCTGAAT
ATATTGTCCGTTGCAGCACCTCGCTATTGGTGCAGGTTTCACCCCCGACC
TGGCCGAGTGCGCGTTCTCCAGGGGCAGCCCCCTGTGGAGACTTAGTGGT
TTGTCTATGAAGTGTCGTCGCCTCGCGATACTAGTGATAGGGCGATCCAC
CGACCCCCGGGATCGCGTCGGATTGGACGGCCCGCAGACGGCGTTCCCCA
AGAAGGCTATACGGAGGCTTGCCAACGACTTGAACATTGCACTCGACAAC
ATAGTCGACTGGGAGAACGCCATCGGCCACAGAGGCGGTAACGGTGGCCC
GAGGGCCGTCCGCTTACTTAGCAAGGGTTTCGGGATGTCAGACATCGAGA
TAGTACGGGAGTGTGACGATGGCTTTCCGGTGCCGATCGACGGCGCGACT
ACTGTGTGTGCTCGCGGGGAAACGATTGGTGTTGTGGCCGTGGACACCAG
GACACTTTCGAGCCGTTACATGCAACGTAAGTTCACCAAACAAGCGACAC
AGTGTTGTTGTTTGGGCACTCACTCTTGTCTCCGATGATGACCACGTTCC
CGGATGCAGTGGATTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11406:102..1268-

>mRNA_Ecto-sp13_S_contig11406.1234.1 ID=mRNA_Ecto-sp13_S_contig11406.1234.1|Name=mRNA_Ecto-sp13_S_contig11406.1234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11406:102..1268- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTGTCGTCGCCTCGCGATACTAGTGATAGGGCGATCCACCGACCC
CCGGGATCGCGTCGGATTGGACGGCCCGCAGACGGCGTTCCCCAAGAAGG
CTATACGGAGGCTTGCCAACGACTTGAACATTGCACTCGACAACATAGTC
GACTGGGAGAACGCCATCGGCCACAGAGGCGGTAACGGTGGCCCGAGGGC
CGTCCGCTTACTTAGCAAGGGTTTCGGGATGTCAGACATCGAGATAGTAC
GGGAGTGTGACGATGGCTTTCCGGTGCCGATCGACGGCGCGACTACTGTG
TGTGCTCGCGGGGAAACGATTGGTGTTGTGGCCGTGGACACCAGGACACT
TTCGAGCCGTTACATGCAACGTAAGTTCACCAAACAAGCGACACAGTGTT
GTTGTTTGGGCACTCACTCTTGTCTCCGATGA
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