prot_Ecto-sp13_S_contig11403.1231.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11403.1231.1
Unique Nameprot_Ecto-sp13_S_contig11403.1231.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length104
Homology
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.340e-43
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0
Query:    1 MLLFGDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVGELVGKGGKSAAEIAADNAEMAQNERDGGRAAARVCTLCSLL 85
            MLLFGDKVGAVNCLEPHPYLPALATSGLSRTVK+WRPTRFTPVGELVGKGGKSAAEIAADNAEMAQNERDGGRAAARV     +L
Sbjct:  586 MLLFGDKVGAVNCLEPHPYLPALATSGLSRTVKVWRPTRFTPVGELVGKGGKSAAEIAADNAEMAQNERDGGRAAARVAITQEML 670          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.420e-33
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 0
Query:    1 MLLFGDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVGELVGKGGKSAAEIAADNAEMAQNERDGGRAAARVCTLCSLLFFFVCGCGDAVDGGAGG 102
            MLLFGDKVGAVNCLEPHPYLPALATSGLS+TVK+WRP R TPVGELVGK GKS  EI  +N EM QN+R+ G+AAARV     +L   + G     D G GG
Sbjct:  541 MLLFGDKVGAVNCLEPHPYLPALATSGLSKTVKVWRPPRITPVGELVGKRGKSPPEIPTENPEMGQNQREQGKAAARVAITQEMLLSIL-GLAPFDDEGDGG 641          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: K8YSZ9_NANGC (Nuclear distribution protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSZ9_NANGC)

HSP 1 Score: 72.0 bits (175), Expect = 1.620e-12
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    2 LLFGDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPV--GELVGKGGKSAAEIAADN 61
            LL+GD+ GAVNCLE HP LP LATSGL   VKIWRPTR   V  G L   GG+ A ++A  N
Sbjct:  402 LLYGDRRGAVNCLETHPNLPVLATSGLEHDVKIWRPTRGLSVRKGALKAHGGEMAEKLAERN 463          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: A0A836CJI5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.260e-12
Identity = 41/85 (48.24%), Postives = 47/85 (55.29%), Query Frame = 0
Query:    5 GDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVGE--LVGKGGKSAAEIAADNAEMAQNERDGGRAAARVCTLCSLLFF 87
            GD+VGAVNCLEPHP+LP LATSGL    KIWRPT   P     L G    +A ++ A N    + E    RA      L SLL F
Sbjct:  490 GDRVGAVNCLEPHPFLPVLATSGLEHDAKIWRPTAARPADARALTGWANVTAEKLCARNNAGRRGELRTRRARHHDRALASLLTF 574          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: W5M380_LEPOC (DDB1- and CUL4-associated factor 8-like n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M380_LEPOC)

HSP 1 Score: 64.3 bits (155), Expect = 5.180e-11
Identity = 28/40 (70.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    5 GDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVG 44
            GDK G VNCLEPHP+LP LATSGL   VKIW PT  T  G
Sbjct:    3 GDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETTTG 42          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: A0A0P7TV26_SCLFO (DDB1-and CUL4-associated factor 8-like n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7TV26_SCLFO)

HSP 1 Score: 67.4 bits (163), Expect = 6.690e-11
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    5 GDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVG 44
            GD+ G VNCLEPHPYLP LATSGL   VK+W PT  TP G
Sbjct:  387 GDRGGVVNCLEPHPYLPVLATSGLDHDVKLWAPTAQTPTG 426          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: UPI0015610D6C (DDB1- and CUL4-associated factor 8-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI0015610D6C)

HSP 1 Score: 67.4 bits (163), Expect = 6.840e-11
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    5 GDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVG 44
            GDK G VNCLEPHP+LP LATSGL   VKIW PT  TP G
Sbjct:  502 GDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETPTG 541          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: UPI001CFB00E5 (DDB1- and CUL4-associated factor 8 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFB00E5)

HSP 1 Score: 67.4 bits (163), Expect = 6.870e-11
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    5 GDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVG 44
            GDK G VNCLEPHP+LP LATSGL   VKIW PT  TP G
Sbjct:  542 GDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTSETPTG 581          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: A0A8J7NP72_ATRSP (DCAF8 factor (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NP72_ATRSP)

HSP 1 Score: 67.4 bits (163), Expect = 6.970e-11
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    5 GDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVG 44
            GDK G VNCLEPHP+LP LATSGL   VKIW PT  TP G
Sbjct:  715 GDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETPTG 754          
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Match: A0A1V4JHB4_PATFA (DDB1-and CUL4-associated factor 8 isoform B n=2 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JHB4_PATFA)

HSP 1 Score: 67.0 bits (162), Expect = 7.820e-11
Identity = 31/44 (70.45%), Postives = 32/44 (72.73%), Query Frame = 0
Query:    5 GDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVGELVG 48
            GDK G VNCLEPHP+LP LATSGL   VKIW PT  TP  EL G
Sbjct:  261 GDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETPT-ELAG 303          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11403.1231.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJD8_9PHAE3.340e-4391.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN6_ECTSI1.420e-3366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8YSZ9_NANGC1.620e-1259.68Nuclear distribution protein n=3 Tax=Monodopsidace... [more]
A0A836CJI5_9STRA2.260e-1248.24WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
W5M380_LEPOC5.180e-1170.00DDB1- and CUL4-associated factor 8-like n=1 Tax=Le... [more]
A0A0P7TV26_SCLFO6.690e-1170.00DDB1-and CUL4-associated factor 8-like n=2 Tax=Scl... [more]
UPI0015610D6C6.840e-1172.50DDB1- and CUL4-associated factor 8-like n=4 Tax=Ac... [more]
UPI001CFB00E56.870e-1172.50DDB1- and CUL4-associated factor 8 n=1 Tax=Protopt... [more]
A0A8J7NP72_ATRSP6.970e-1172.50DCAF8 factor (Fragment) n=1 Tax=Atractosteus spatu... [more]
A0A1V4JHB4_PATFA7.820e-1170.45DDB1-and CUL4-associated factor 8 isoform B n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15574:SF29DDB1- AND CUL4-ASSOCIATED FACTOR 8-LIKE PROTEIN 1coord: 4..48
NoneNo IPR availablePANTHERPTHR15574WD REPEAT DOMAIN-CONTAINING FAMILYcoord: 4..48
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 9..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11403contigEcto-sp13_S_contig11403:3747..5064 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11403.1231.1mRNA_Ecto-sp13_S_contig11403.1231.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11403 2119..5184 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11403.1231.1 ID=prot_Ecto-sp13_S_contig11403.1231.1|Name=mRNA_Ecto-sp13_S_contig11403.1231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MLLFGDKVGAVNCLEPHPYLPALATSGLSRTVKIWRPTRFTPVGELVGKG
GKSAAEIAADNAEMAQNERDGGRAAARVCTLCSLLFFFVCGCGDAVDGGA
GGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf