mRNA_Ecto-sp13_S_contig1140.1227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1140.1227.1
Unique NamemRNA_Ecto-sp13_S_contig1140.1227.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D8LDP2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.200e-38
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 ATEEDHTALSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVV 252
            A +ED TAL GLE RLF+LVSE ATSAQW EWLRAPLEH VAEGDKDLALTLLKAG NGGSGW+G +DRTLLQAAAEGGNEEVV
Sbjct:    2 AAKEDRTALKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSGWEGCNDRTLLQAAAEGGNEEVV 85
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D8LCR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR4_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 8.460e-35
Identity = 62/82 (75.61%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 ATEEDHTALSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEE 246
            AT ED T LSGL  RLFQL+SE ATS QW EW+ APLEH VAEGDKDLA TLLKA  NGG GWKG DDRTLL AAAE GN E
Sbjct:    2 ATGEDRTVLSGLAMRLFQLMSEKATSRQWTEWIEAPLEHAVAEGDKDLAWTLLKAAANGGPGWKGCDDRTLLHAAAESGNAE 83
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 8.420e-34
Identity = 65/84 (77.38%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 ATEEDHTALSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVV 252
            A EED TAL+GLE  LF+LVSE A SAQW EWLRAPLEH VAEGD DLAL LLKAG +G +GW+G  DRTLLQAAAEGGNEEVV
Sbjct:    2 AAEEDRTALNGLEKMLFKLVSEKAASAQWSEWLRAPLEHAVAEGDNDLALALLKAGADGSAGWEGCGDRTLLQAAAEGGNEEVV 85
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.550e-33
Identity = 68/89 (76.40%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 ATEEDHTALSGLETRLFQLVSEN----ATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVVR 255
            ATEED TAL  LET L  +   N     TSAQW EWLRAPLEH VAEGDKDLALTLL AG NGGSGWKG +DRTLLQAAAEGGNEEVVR
Sbjct:   10 ATEEDRTALGRLETILLSINCSNWCGRTTSAQWAEWLRAPLEHAVAEGDKDLALTLLNAGANGGSGWKGCNDRTLLQAAAEGGNEEVVR 98
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.300e-24
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   22 ALSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVV 252
            AL G E +LF+LVS +AT AQW EWLRAPLEH VAEG++ LA TLL+AG +GG+GWKG D R+LL  A +GGN + V
Sbjct:   10 ALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTV 86
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: A0A6H5JQI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.470e-24
Identity = 49/58 (84.48%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   82 QWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVVR 255
            QW EWLR PLEH VAEGDKDLALTLLKAG +GGSGWKG DD TLLQ AAEGGNE VVR
Sbjct:   42 QWAEWLRIPLEHAVAEGDKDLALTLLKAGASGGSGWKGCDDPTLLQVAAEGGNEVVVR 99
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.330e-21
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   46 LFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVV 252
            +F+L+ + ATS QW EWLRAPLEH     ++DL   LLKAG +G +GW+G DD+TLL AAAEGGNEEVV
Sbjct:   22 IFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEVV 90
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.150e-20
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:   25 LSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVV 252
            L GLE  +F+LV E ATS QW EWLRAPLEH  AEG+ DL   L+ AG +G +GW+G   RTLL AAA G NEE+V
Sbjct:   65 LDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIV 140
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.460e-20
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    7 EEDHTALSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVV 252
            EE  + L  L    F+LV + AT  QW EWLRAPLEH  A G++DL   LL AG NGG+GW+G   +TLL AAAEGGN +V+
Sbjct:   47 EERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVI 128
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BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 9.430e-20
Identity = 44/76 (57.89%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:   25 LSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLALTLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVV 252
            L G E   F+LV + AT  QW EWLRAPLEH  A  D DL   LL AG NG +GW G D +TLL AAAEGGN +V+
Sbjct:   14 LRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVI 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1140.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP2_ECTSI1.200e-3884.52Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LCR4_ECTSI8.460e-3575.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKW6_ECTSI8.420e-3477.38Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FYG4_ECTSI3.550e-3376.40Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LH19_ECTSI3.300e-2463.64Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JQI2_9PHAE4.470e-2484.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQP1_ECTSI6.330e-2162.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G692_ECTSI1.150e-2060.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHQ7_ECTSI7.460e-2054.88F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
D7FPN3_ECTSI9.430e-2057.89Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1140contigEcto-sp13_S_contig1140:12302..12559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score142.9
Seed ortholog evalue7e-32
Seed eggNOG ortholog2880.D8LDP2
Model size258
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size258
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.287385-CDS-Ecto-sp13_S_contig1140:12301..125591681462597.287385-CDS-Ecto-sp13_S_contig1140:12301..12559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1140 12302..12559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1140.1227.1prot_Ecto-sp13_S_contig1140.1227.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1140 12302..12559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1140.1227.1

>prot_Ecto-sp13_S_contig1140.1227.1 ID=prot_Ecto-sp13_S_contig1140.1227.1|Name=mRNA_Ecto-sp13_S_contig1140.1227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
ATEEDHTALSGLETRLFQLVSENATSAQWMEWLRAPLEHVVAEGDKDLAL
TLLKAGVNGGSGWKGWDDRTLLQAAAEGGNEEVVRM
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mRNA from alignment at Ecto-sp13_S_contig1140:12302..12559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1140.1227.1 ID=mRNA_Ecto-sp13_S_contig1140.1227.1|Name=mRNA_Ecto-sp13_S_contig1140.1227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1140:12302..12559- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACCGAAGAGGACCACACAGCCTTGAGTGGGTTGGAGACGAGACTGTT
CCAACTGGTGTCGGAGAACGCGACTTCAGCGCAGTGGATGGAATGGCTTC
GAGCTCCCCTGGAGCACGTTGTTGCTGAGGGCGACAAGGACCTCGCCTTG
ACCCTGCTGAAAGCCGGGGTGAACGGCGGATCAGGCTGGAAGGGTTGGGA
CGATCGCACTCTACTGCAGGCGGCTGCTGAGGGAGGAAACGAGGAGGTGG
TACGCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1140:12302..12559-

>mRNA_Ecto-sp13_S_contig1140.1227.1 ID=mRNA_Ecto-sp13_S_contig1140.1227.1|Name=mRNA_Ecto-sp13_S_contig1140.1227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1140:12302..12559- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACCGAAGAGGACCACACAGCCTTGAGTGGGTTGGAGACGAGACTGTT
CCAACTGGTGTCGGAGAACGCGACTTCAGCGCAGTGGATGGAATGGCTTC
GAGCTCCCCTGGAGCACGTTGTTGCTGAGGGCGACAAGGACCTCGCCTTG
ACCCTGCTGAAAGCCGGGGTGAACGGCGGATCAGGCTGGAAGGGTTGGGA
CGATCGCACTCTACTGCAGGCGGCTGCTGAGGGAGGAAACGAGGAGGTGG
TACGCATG
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