mRNA_Ecto-sp13_S_contig1140.1229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1140.1229.1
Unique NamemRNA_Ecto-sp13_S_contig1140.1229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1140.1229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1140contigEcto-sp13_S_contig1140:17251..17717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size468
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.1918597-CDS-Ecto-sp13_S_contig1140:17250..176161681462597.1918597-CDS-Ecto-sp13_S_contig1140:17250..17616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1140 17251..17616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.2009175-UTR-Ecto-sp13_S_contig1140:17616..177171681462597.2009175-UTR-Ecto-sp13_S_contig1140:17616..17717Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1140 17617..17717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1140.1229.1prot_Ecto-sp13_S_contig1140.1229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1140 17251..17616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1140.1229.1

>prot_Ecto-sp13_S_contig1140.1229.1 ID=prot_Ecto-sp13_S_contig1140.1229.1|Name=mRNA_Ecto-sp13_S_contig1140.1229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
TGEGGGWLLQAAVEAVGKHRVWALQFRHSFLVACQPGLKVTTSPGYRVPG
DRKRRCSRSSGRVCAGGTVKNIFQCYFAGGTRKTISSVIAVNEQTCSVSL
MPLSLLLGPASRSGGKPRRFL*
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mRNA from alignment at Ecto-sp13_S_contig1140:17251..17717+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1140.1229.1 ID=mRNA_Ecto-sp13_S_contig1140.1229.1|Name=mRNA_Ecto-sp13_S_contig1140.1229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=467bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1140:17251..17717+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGGGGAAGGAGGGGGGTGGTTGTTGCAAGCAGCGGTGGAAGCCGTAGG
CAAGCATAGAGTGTGGGCGCTGCAGTTCCGCCACAGCTTTTTGGTCGCCT
GTCAACCTGGGCTGAAAGTGACAACATCACCGGGGTACCGTGTCCCAGGA
GACAGGAAGAGGCGTTGTTCCCGGAGTAGTGGGCGGGTGTGCGCTGGTGG
CACCGTAAAAAATATTTTCCAATGCTACTTCGCTGGTGGCACAAGGAAAA
CGATTTCCAGTGTCATTGCGGTCAACGAGCAAACATGTTCGGTGTCTCTG
ATGCCGCTTTCGCTGCTATTGGGGCCAGCTAGTCGTAGCGGGGGAAAACC
ACGGCGATTTTTGTAGTCATGCTTGAGGAGATTGCGGGTTGAGGCACTCC
TCATGCTGTTTGTACGCAAAGGATTTTGCTGCCTCAAATTGGGCGTGGCG
AACAATATATCTCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1140:17251..17717+

>mRNA_Ecto-sp13_S_contig1140.1229.1 ID=mRNA_Ecto-sp13_S_contig1140.1229.1|Name=mRNA_Ecto-sp13_S_contig1140.1229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1140:17251..17717+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGGGGAAGGAGGGGGGTGGTTGTTGCAAGCAGCGGTGGAAGCCGTAGG
CAAGCATAGAGTGTGGGCGCTGCAGTTCCGCCACAGCTTTTTGGTCGCCT
GTCAACCTGGGCTGAAAGTGACAACATCACCGGGGTACCGTGTCCCAGGA
GACAGGAAGAGGCGTTGTTCCCGGAGTAGTGGGCGGGTGTGCGCTGGTGG
CACCGTAAAAAATATTTTCCAATGCTACTTCGCTGGTGGCACAAGGAAAA
CGATTTCCAGTGTCATTGCGGTCAACGAGCAAACATGTTCGGTGTCTCTG
ATGCCGCTTTCGCTGCTATTGGGGCCAGCTAGTCGTAGCGGGGGAAAACC
ACGGCGATTTTTGTAG
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