mRNA_Ecto-sp13_S_contig114.1224.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig114.1224.1 vs. uniprot
Match: A0A6H5KNY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY7_9PHAE) HSP 1 Score: 1357 bits (3511), Expect = 0.000e+0 Identity = 732/832 (87.98%), Postives = 756/832 (90.87%), Query Frame = 1
Query: 613 MLRAQYCVLVEDLQRSESAEVGKDDDPLRQASILTAACWQLRDHGSSDAGNEQGTAAALELAAAVVAAGLTSGSPNLSRRMMDTLRWEGQAPPLEDKLVGIASRVRWMYLVRLAVELGFCDLNEWEEALHLLAEPRKPIDLESLYETRQGIHALFHGFRGADGPLLLDGVFPRSTESRVELVSLIERGQARLARLNVLLRALWSESAGTGRGSFEERTEALNTLVGVMLGESQLHPNFALKLFSALGLDVIRRAKSGLDKVPQSLQGDIANLGLPSGGVLSEASQRAALAVTKLAALVRISEALNKSRDELSLGLAQRGAALQAELRVHVKAYAEHQQNYRREEVLSAAEDFIAEMPPEEAEHGPGNSQLDIMTQLLGAIITGRRQHLDHVFKPNATTTSLQEDISAEFSTPSGKEARAQSGVPDAAMVGSNHSSEQALASPMHTDRRTPNPMKQDRHRLDPRGNLLEIFAKIASAMPCDPDQYVASAWRTMQASRTSLDHNSPMERPRGDEEVELEAFELAVDAQALETLRESLLEAIDRPERNLCDLPVSVNEEVEQPRSGGIRLMTAPLSGSEVTHADETKVLQRQTEAVRYKNAMHIVARTGLALPSPAEAGTPSLTAFVAAAKHAKRWRSAAQDDGSGLGRPELERLNSIMDMRITNLSDQLATLIRNKNVELGTAKQTKADHEVLLSPHDWAKRERQRLNARIRIRKEKLHGMEARLRDIRKGDKGRTGDVEAIWMSEDARLEMETNLLLISRKIAKANFLLRKMRSRWDIFRERHRHLAPLVHDRLTQSDTFKNGAPGARVITETSPRERSQRPSPTSSFVVDAQ 3108
MLRAQ+CVLVEDLQRSESA+VG+DDDPLRQAS+LTAACWQLRD+GSSDAGNEQGT AALELAAAVVAAGLTS S +LSRRMMDTLRWEGQAPPLE KLVGIASRVRWMYLVRLAVELG CDLNEWEEALHLLAEP+KPIDLESL+ETRQGIHALFHGFRG DGPLLL GVFPRSTESR ELVSLIERG +RLAR NVLLRA+WSESAGTGRGSFEERTEALNTLVGVMLGESQLHP+FALKLFSALGLDVIRRAKS DKVPQSLQG+IANLGL SGGVLSEASQRAALAVTKLAALVRISE L+KSRDELSL LAQRGAALQAELRV VKAYAEHQQ+ RREEVLSAAEDFIAEMPPEEAEHGPGNSQLDIMT LLGAIITG TPSGKEARAQSGVPDAAMVGSNHSSEQALASP TDRRTP+PMKQDRHRLD RGNLLEIFAKIASAMPCDPDQYVASAWRTMQASRT + MERPRGDEEVELEAFELAVDAQALETLRESLL AIDRPERNLCDLPVSVN E+EQP SGGIRL+T PLSG EVTH DE K LQRQ EAVRYKNAM+IVARTGLAL PAEAGTPSLTA VAAAKHAKRW+SAAQDD SGLGRPELERLNSIMDMRIT+LSDQLATL+R+K VE GTAKQTKADHEV+LSP DW KRERQRLN RIRIRKEKLHGME RLR IRKGDKGRTGDVEAIWMSED RLEMETNL LISRKIAKANFLLRKMRSRWDIFRERHRHLAPLVHDRLTQSDTFKNGAPGARVITETSPRERSQRPSPTSSFVVDAQ
Sbjct: 1 MLRAQHCVLVEDLQRSESADVGEDDDPLRQASLLTAACWQLRDNGSSDAGNEQGTTAALELAAAVVAAGLTSASSDLSRRMMDTLRWEGQAPPLEGKLVGIASRVRWMYLVRLAVELGLCDLNEWEEALHLLAEPKKPIDLESLHETRQGIHALFHGFRGGDGPLLLGGVFPRSTESRGELVSLIERGHSRLARFNVLLRAIWSESAGTGRGSFEERTEALNTLVGVMLGESQLHPSFALKLFSALGLDVIRRAKSSPDKVPQSLQGEIANLGLSSGGVLSEASQRAALAVTKLAALVRISEVLSKSRDELSLDLAQRGAALQAELRVQVKAYAEHQQSQRREEVLSAAEDFIAEMPPEEAEHGPGNSQLDIMTHLLGAIITG---------------------------TPSGKEARAQSGVPDAAMVGSNHSSEQALASP--TDRRTPDPMKQDRHRLDARGNLLEIFAKIASAMPCDPDQYVASAWRTMQASRTL----ARMERPRGDEEVELEAFELAVDAQALETLRESLLGAIDRPERNLCDLPVSVNGEIEQPLSGGIRLITVPLSGLEVTHDDEMKALQRQAEAVRYKNAMNIVARTGLALQPPAEAGTPSLTAIVAAAKHAKRWKSAAQDDVSGLGRPELERLNSIMDMRITSLSDQLATLVRSKKVEPGTAKQTKADHEVVLSPDDWVKRERQRLNVRIRIRKEKLHGMETRLRHIRKGDKGRTGDVEAIWMSEDERLEMETNLFLISRKIAKANFLLRKMRSRWDIFRERHRHLAPLVHDRLTQSDTFKNGAPGARVITETSPRERSQRPSPTSSFVVDAQ 799
BLAST of mRNA_Ecto-sp13_S_contig114.1224.1 vs. uniprot
Match: D7FJK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK7_ECTSI) HSP 1 Score: 910 bits (2351), Expect = 0.000e+0 Identity = 509/661 (77.00%), Postives = 532/661 (80.48%), Query Frame = 1
Query: 730 QLRDHGSSDAGNEQGTAAALELAAAVVAAGLTSGSPNLSRRMMDTLRWEGQAPPLEDKLVGIASRVRWMYLVRLAVELGFCDLNEWEEALHLLAEPRKPIDLESLYETRQGIHALFHGFRGADGPLLLDGVFPRSTESRVELVSLIERGQARLARLNVLLRALWSESAGTGRGSFEERTEALNTLVGVMLGESQLHPNFALKLFSALGLDVIRRAKSGLDKVPQSLQGDIANLGLPSGGVLSEASQRAALAVTKLAALVRISEALNKSRDELSLGLAQRGAALQAELRVHVKAYAEHQQNYRREEVLSAAEDFIAEMPPEEAEHGPGNSQLDIMTQLLGAIITGRRQHLDHVFKPNATTTSLQEDISAEFSTPSGKEARAQSGVPDAAMVGSNHSSEQALASPMHTDRRTPNPMKQDRHRLDPRGNLLEIFAKIASAMPCDPDQYVASAWRTMQASRTSLDHNSPMERPRGDEEVELEAFELAVDAQALETLRESLLEAIDRPERNLCDLPVSVNEEVEQPRSGGIRLMTAPLSGSEVTHADETKVLQRQTEAVRYKNAMHIVARTGLALPSPAEAGTPSLTAFVAAAKHAKRWRSAAQDDGSGLGRPELERLNSIMDMRITNLSDQLATLIRNKNVELGTAKQTKADHEVLLSPHDWAKR 2712
+LRD+GSSDAGNEQGTAAALELAAAV+AAGLTSGS +LSRRMMDTLRWEGQAPPLEDKLVGIASRVRWMYLVRLAVELG CDL+EW+E +LLAEP+KPIDL SLYETRQGIHALFHGFRG DGPLLLDGVFPRSTESR ELVSLIERGQARLA+LNVLLRALWSESAGTGRGSFE+RTEALNTLVGVM+GESQLHPNFALKLFSALGLDVIRRAKSG DKVPQSLQGDIANLGL SGGVLSEASQRAALAVTKLAAL RISEAL+KSRDELSL +AQRGAALQAELRV Q GVPDAAMVGSNHSSEQALASP TDRRTP+PMKQDRHRLD RGNLLEIFAKIASAMPCDPDQ VASAWRTMQA +ERPRGDEEVELEAFELA+DAQALETLRESLLEAI RPERNL DLPVSVNEE+EQP SGGIRL+TAPLSGSEVTH DE K LQRQ EAVRYKNAM+IVARTGLALPSPA GTPSLTAFVAAAKHAKRWRSAAQDDGSGLGRPELERLNSIM+MRITNLSDQLATL+R+KNVE GTAKQTKADHEV+LSP DW KR
Sbjct: 18 KLRDNGSSDAGNEQGTAAALELAAAVIAAGLTSGSSDLSRRMMDTLRWEGQAPPLEDKLVGIASRVRWMYLVRLAVELGLCDLSEWQEVSNLLAEPKKPIDLGSLYETRQGIHALFHGFRGGDGPLLLDGVFPRSTESRGELVSLIERGQARLAKLNVLLRALWSESAGTGRGSFEDRTEALNTLVGVMVGESQLHPNFALKLFSALGLDVIRRAKSGPDKVPQSLQGDIANLGLSSGGVLSEASQRAALAVTKLAALARISEALSKSRDELSLDVAQRGAALQAELRV-------------------------------------------------------------------------------------------QGGVPDAAMVGSNHSSEQALASP--TDRRTPDPMKQDRHRLDARGNLLEIFAKIASAMPCDPDQDVASAWRTMQAR---------IERPRGDEEVELEAFELAMDAQALETLRESLLEAIHRPERNLFDLPVSVNEEIEQPLSGGIRLITAPLSGSEVTHDDEKKALQRQAEAVRYKNAMNIVARTGLALPSPAGVGTPSLTAFVAAAKHAKRWRSAAQDDGSGLGRPELERLNSIMEMRITNLSDQLATLVRSKNVEPGTAKQTKADHEVVLSPDDWVKR 576 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig114.1224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig114.1224.1 >prot_Ecto-sp13_S_contig114.1224.1 ID=prot_Ecto-sp13_S_contig114.1224.1|Name=mRNA_Ecto-sp13_S_contig114.1224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1045bp MYTRKAEHLQHIVEQQRARLEQISVELARTKEEAGSLDDSLQNIARLESAback to top mRNA from alignment at Ecto-sp13_S_contig114:26135..35797+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig114.1224.1 ID=mRNA_Ecto-sp13_S_contig114.1224.1|Name=mRNA_Ecto-sp13_S_contig114.1224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:26135..35797+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig114:26135..35797+ >mRNA_Ecto-sp13_S_contig114.1224.1 ID=mRNA_Ecto-sp13_S_contig114.1224.1|Name=mRNA_Ecto-sp13_S_contig114.1224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:26135..35797+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |