mRNA_Ecto-sp13_S_contig114.1222.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig114.1222.1
Unique NamemRNA_Ecto-sp13_S_contig114.1222.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig114.1222.1 vs. uniprot
Match: A0A6H5KLX5_9PHAE (HORMA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLX5_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 2.980e-97
Identity = 155/165 (93.94%), Postives = 158/165 (95.76%), Query Frame = 3 
Query:    3 VLLRAKLLMEQGVVRRVLVCFFLDEEHVDQAPVERVAFDVRVDDDGDDFVDSTSLQDVEDQLRSALLQIQKSSAHLPTRQGCTFALHVEAHEDKEGQVGWHDATQDSGQSSPVRSALRGGKWVLADSVAQGVVTEPGRRRIVPIKSVRGRGLSLNLSTEMGDCSV 497
            VLLR KLLMEQGVVRRVLVCFFL+EEHVDQAPVERVAFDVRVD+DGDD VDSTSLQDVEDQLRSALLQIQKSSAHLPTRQGCTFALHVEAHED EGQVG HDATQD  QSSPVRSALRGGKWVLADSVAQGV+ EPGRRRIVPIKSVRGRGLSLNLSTEMGDCSV
Sbjct:   65 VLLRVKLLMEQGVVRRVLVCFFLEEEHVDQAPVERVAFDVRVDNDGDDSVDSTSLQDVEDQLRSALLQIQKSSAHLPTRQGCTFALHVEAHEDNEGQVGRHDATQDYAQSSPVRSALRGGKWVLADSVAQGVLAEPGRRRIVPIKSVRGRGLSLNLSTEMGDCSV 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig114.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLX5_9PHAE2.980e-9793.94HORMA domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig114contigEcto-sp13_S_contig114:3485..5339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score287.3
Seed ortholog evalue4.2e-75
Seed eggNOG ortholog2880.D7FJL0
Preferred nameMAD2L2
Model size1114
KEGG koko:K02537,ko:K03508,ko:K13728
KEGG Pathwayko01100,ko03460,ko04110,ko04111,ko04113,ko04114,ko04914,ko05100,ko05131,ko05166,map01100,map03460,map04110,map04111,map04113,map04114,map04914,map05100,map05131,map05166
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000018,GO:0000075,GO:0000122,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000731,GO:0001085,GO:0001102,GO:0001558,GO:0001932,GO:0001934,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007162,GO:0007165,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008432,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010224,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0010648,GO:0010717,GO:0010719,GO:0010944,GO:0010948,GO:0010965,GO:0015630,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0017125,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019900,GO:0019901,GO:0019985,GO:0022402,GO:0022407,GO:0022408,GO:0023051,GO:0023052,GO:0023057,GO:0030029,GO:0030036,GO:0030071,GO:0030111,GO:0030155,GO:0030178,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031577,GO:0031974,GO:0031981,GO:0032042,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033135,GO:0033138,GO:0033554,GO:0033613,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035861,GO:0040008,GO:0042176,GO:0042177,GO:0042276,GO:0042325,GO:0042327,GO:0042575,GO:0042770,GO:0042772,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043433,GO:0043504,GO:0043596,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045191,GO:0045595,GO:0045596,GO:0045738,GO:0045739,GO:0045786,GO:0045830,GO:0045839,GO:0045841,GO:0045892,GO:0045893,GO:0045910,GO:0045911,GO:0045930,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051090,GO:0051093,GO:0051094,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051339,GO:0051348,GO:0051349,GO:0051438,GO:0051444,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060828,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070987,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090090,GO:0090304,GO:0090734,GO:0097435,GO:1901360,GO:1901362,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1902679,GO:1902680,GO:1903047,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903508,GO:1904666,GO:1904667,GO:1905818,GO:1905819,GO:1990234,GO:2000026,GO:2000042,GO:2000047,GO:2000048,GO:2000112,GO:2000113,GO:2000677,GO:2000678,GO:2000779,GO:2000780,GO:2000781,GO:2000816,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001141,GO:2001251
Exons3
EggNOG free text desc.negative regulation of ubiquitin protein ligase activity
EggNOG OGsKOG3186@1,KOG3186@2759
Ec32 ortholog descriptionHORMA domain protein
Ec32 orthologEc-04_006500.1
EC2.7.7.7
Cds size474
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.6470795-UTR-Ecto-sp13_S_contig114:3484..35101681462596.6470795-UTR-Ecto-sp13_S_contig114:3484..3510Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig114 3485..3510 +
1681462596.68887-UTR-Ecto-sp13_S_contig114:4725..53391681462596.68887-UTR-Ecto-sp13_S_contig114:4725..5339Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig114 4726..5339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.6578925-CDS-Ecto-sp13_S_contig114:3510..36541681462596.6578925-CDS-Ecto-sp13_S_contig114:3510..3654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 3511..3654 +
1681462596.6666381-CDS-Ecto-sp13_S_contig114:3861..40081681462596.6666381-CDS-Ecto-sp13_S_contig114:3861..4008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 3862..4008 +
1681462596.6797197-CDS-Ecto-sp13_S_contig114:4542..47251681462596.6797197-CDS-Ecto-sp13_S_contig114:4542..4725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 4543..4725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig114.1222.1prot_Ecto-sp13_S_contig114.1222.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig114 3511..4725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig114.1222.1

>prot_Ecto-sp13_S_contig114.1222.1 ID=prot_Ecto-sp13_S_contig114.1222.1|Name=mRNA_Ecto-sp13_S_contig114.1222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MEQGVVRRVLVCFFLDEEHVDQAPVERVAFDVRVDDDGDDFVDSTSLQDV
EDQLRSALLQIQKSSAHLPTRQGCTFALHVEAHEDKEGQVGWHDATQDSG
QSSPVRSALRGGKWVLADSVAQGVVTEPGRRRIVPIKSVRGRGLSLNLST
EMGDCSV*
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mRNA from alignment at Ecto-sp13_S_contig114:3485..5339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig114.1222.1 ID=mRNA_Ecto-sp13_S_contig114.1222.1|Name=mRNA_Ecto-sp13_S_contig114.1222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:3485..5339+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTATTGCTACGGGCGAAGTTGCTTATGGAACAAGGAGTAGTTCGTAGA
GTGCTTGTGTGCTTCTTCCTGGACGAAGAACACGTGGACCAAGCCCCTGT
AGAGAGAGTCGCGTTCGACGTTCGGGTTGATGACGATGGTGATGACTTCG
TGGACTCAACAAGTCTGCAGGTACTCACATTTACTCGTTTAGTGCGTCTA
TCCTGTTTTTTGTTTTCTACGCACTCGTGGTGGCGCTGCCACCTCCAGGA
AATATCCAAACAGCTGTTTCTAGAACCCATCGTTCGCCAACCTGTCGTGT
CCATTTGTGTTTTGTCAATCCCCGCGTCCATCCATCCATCCCCATTTAAC
CTCATGATTGTTTTGCTCTATTGCCAGGACGTAGAAGATCAGCTTCGGTC
TGCGCTCCTCCAGATTCAAAAATCGTCGGCTCACCTACCGACGCGGCAAG
GCTGCACGTTTGCTTTGCACGTAGAAGCCCACGAGGACAAGGAAGGCCAA
GTCGGATGGCACGATGCAACTCAGGTGCGACCAATGTACCGATAATGTAC
TGCTTCGGCTCAGCGTTTCAACTGCGATGCATGCACTCGTAAGGTTCGTC
CGACGTGGTCATACGACGTTCTACCGCACAGTTTTTTACCGGCCCGTGCA
GGCGATGCATACTTGTCTAGGCGGTTGAAACTACCCGAGACCTCCTGTCT
CTCCTTAGGCTTTAGTTCGAACTCGACAGCAAGTCAAGACGTGTGCAGTA
GGTGTTCCCCAAAACTTTCAGTGTATCAGCAACTGAGCGTGGAGGTTCTT
GCGCAAAGATGCCACATTTTCGTCACACAAAGGCGTGTAGATTGCATCGT
GCATCGGCATAAGTACGTCCCATGGGTTTTTGGTGATATTTCGCTTTTTT
ACGGAGCATCATTCGCTAGAACTGTCCCTGCTAGCGGTAGCTAACGCTCG
TGTAGCAACACCTTGCAGTGAGCGAAGGTTACTGTTGCATTAACATGGCT
ACAGTAGTGGTTGGAAGAGCCCAAGCAACTTGCGTGCGGTATCTTTGACC
AATCCCAGGATAGTGGCCAGTCTTCACCTGTAAGGTCAGCGCTGCGGGGG
GGCAAGTGGGTACTCGCGGACAGCGTTGCGCAAGGAGTGGTGACGGAGCC
AGGGCGACGGAGAATAGTCCCCATCAAGTCTGTGAGGGGCAGGGGCCTGA
GCCTGAATTTGTCGACGGAGATGGGAGACTGCTCGGTGTAAAAAGTATTC
AACGTACATTGACACACGACCCCGGACTGGACATGCCGTTTATAATAGCT
GACGACAACTCACGGGTCGGCCCTTCGCGCAGATCGTAGAGAATGCACAG
GGGAGCCTAGCACAAGCAAGGACAGAGCGATTTAGCTAAGATTCCGCACA
GGTTGGCTGAGTGCTCACAAGGATGATTGTTGTTGTTTCCTTGTGACTCT
GGAGAACACGCACTGCGAGCACGAGGTTACGTGTGGCTCCAGGACACGTA
TTGAGCTGCGGCCTGGAAAACGGCTTGTCGCAACGCTTATTGTCGCGGTC
TGGTGGCACCTTGGCGGTAAAGACGTCAAAGGGTAGATTGTTCAAGTGGA
GTACATGGACACACGATGCCCACATCGTTGCGCTGCGGAACACGACAACT
TCTGAGGGAAATACAACAGCCAAGTAGAAGACATCGAATCTTGGATCAGG
CAACAAGACGCTATTATTCCACCTCGCCATGATCACCATTCGCTATACGT
TCATCTGATTAGTTTTTGTCTGCTGCGCAGTGCCGGCGTGTGTGTTTTAG
TCGTAGTATTTGAGCCGAATGAACGTGTCGTATGTCTCTGCATATGATAC
AATGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig114:3485..5339+

>mRNA_Ecto-sp13_S_contig114.1222.1 ID=mRNA_Ecto-sp13_S_contig114.1222.1|Name=mRNA_Ecto-sp13_S_contig114.1222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:3485..5339+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACAAGGAGTAGTTCGTAGAGTGCTTGTGTGCTTCTTCCTGGACGA
AGAACACGTGGACCAAGCCCCTGTAGAGAGAGTCGCGTTCGACGTTCGGG
TTGATGACGATGGTGATGACTTCGTGGACTCAACAAGTCTGCAGGACGTA
GAAGATCAGCTTCGGTCTGCGCTCCTCCAGATTCAAAAATCGTCGGCTCA
CCTACCGACGCGGCAAGGCTGCACGTTTGCTTTGCACGTAGAAGCCCACG
AGGACAAGGAAGGCCAAGTCGGATGGCACGATGCAACTCAGGATAGTGGC
CAGTCTTCACCTGTAAGGTCAGCGCTGCGGGGGGGCAAGTGGGTACTCGC
GGACAGCGTTGCGCAAGGAGTGGTGACGGAGCCAGGGCGACGGAGAATAG
TCCCCATCAAGTCTGTGAGGGGCAGGGGCCTGAGCCTGAATTTGTCGACG
GAGATGGGAGACTGCTCGGTGTAA
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