mRNA_Ecto-sp13_S_contig11399.1221.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11399.1221.1
Unique NamemRNA_Ecto-sp13_S_contig11399.1221.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11399.1221.1 vs. uniprot
Match: A0A6H5JTM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM5_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.080e-45
Identity = 99/138 (71.74%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:  106 MALVVAAAKGRPDWESWTYTRPALLPPPGVATSCTAAAAAEGKRGGEPPSVAVMADHDGDDIAGGCGGSDEDNYGAGGIGMRSASRRTSDSWIAPQLRLRSRGVDGPSAVESAPAAAAAVASSTSLFGLRGRRQSLPA 519
            MALVVAAAKGRPDWESWTYTRPALLPPPGVATSC AAAA EGKRGGEP SVAVMADH               NYGAGG GMRSA+RRTSDSWIAPQLRLRSRG + P   ++A          TSL GLRGRRQSLPA
Sbjct:    1 MALVVAAAKGRPDWESWTYTRPALLPPPGVATSCPAAAA-EGKRGGEPSSVAVMADHXXXXXXXXXXXXXXXNYGAGGTGMRSAARRTSDSWIAPQLRLRSRGGNSP---DAAAPXXXXXXXXTSLVGLRGRRQSLPA 134
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BLAST of mRNA_Ecto-sp13_S_contig11399.1221.1 vs. uniprot
Match: D8LFW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.930e-10
Identity = 58/140 (41.43%), Postives = 62/140 (44.29%), Query Frame = 1 
Query:  118 VAAAKGRPDWESWTYTRPALLPPPGVATSCTAAAAAEGKRGGEPPSVAVMADHDGDDIAGGCGGSDED--NYGAGGIGMRSASRRTSDSWIAPQLRLRSRGVDGPSAVESAPAAAAAVAS---STSLFGLRGRRQSLPAS 522
            V   +GRPDWESWTYTRPALLP                                                N+GAGG+G RSA+RRTSDSWIAPQLRL                          STSLFGLRGRRQSLPAS
Sbjct:  326 VLGLEGRPDWESWTYTRPALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFGAGGMGTRSAARRTSDSWIAPQLRLXXXXXXXXXXXXXXXXXXXXXXXXXXSTSLFGLRGRRQSLPAS 465
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11399.1221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTM5_9PHAE1.080e-4571.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFW8_ECTSI1.930e-1041.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11399contigEcto-sp13_S_contig11399:2160..2681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.6188688-CDS-Ecto-sp13_S_contig11399:2159..26811681462596.6188688-CDS-Ecto-sp13_S_contig11399:2159..2681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11399 2160..2681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11399.1221.1prot_Ecto-sp13_S_contig11399.1221.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11399 2160..2681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11399.1221.1

>prot_Ecto-sp13_S_contig11399.1221.1 ID=prot_Ecto-sp13_S_contig11399.1221.1|Name=mRNA_Ecto-sp13_S_contig11399.1221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
SDSDSDSDGGESRDDAARAEERLRCFLVDASPLHAMALVVAAAKGRPDWE
SWTYTRPALLPPPGVATSCTAAAAAEGKRGGEPPSVAVMADHDGDDIAGG
CGGSDEDNYGAGGIGMRSASRRTSDSWIAPQLRLRSRGVDGPSAVESAPA
AAAAVASSTSLFGLRGRRQSLPAS
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mRNA from alignment at Ecto-sp13_S_contig11399:2160..2681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11399.1221.1 ID=mRNA_Ecto-sp13_S_contig11399.1221.1|Name=mRNA_Ecto-sp13_S_contig11399.1221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11399:2160..2681+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGACAGCGACAGCGACAGCGACGGGGGCGAGAGTCGCGACGACGCCGC
GCGGGCGGAGGAGAGGCTCCGCTGCTTCCTCGTGGACGCGAGCCCGCTGC
ACGCGATGGCGCTCGTGGTTGCCGCCGCCAAGGGCCGGCCGGACTGGGAG
TCATGGACGTACACACGCCCGGCCCTGCTCCCACCCCCCGGCGTTGCGAC
GTCGTGTACGGCGGCGGCCGCGGCGGAGGGGAAGAGAGGAGGAGAACCGC
CGTCTGTCGCGGTGATGGCCGACCACGATGGTGATGACATCGCTGGCGGC
TGCGGTGGCAGCGATGAAGACAATTATGGCGCCGGTGGTATTGGGATGCG
GTCTGCCTCGCGCCGAACCAGCGACAGCTGGATAGCGCCCCAGCTGCGGC
TAAGGTCCAGAGGCGTCGATGGCCCCTCTGCGGTAGAGTCCGCGCCGGCG
GCGGCGGCGGCGGTGGCGAGCTCGACATCCCTTTTTGGACTCCGTGGCAG
GCGGCAGTCGCTTCCGGCTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11399:2160..2681+

>mRNA_Ecto-sp13_S_contig11399.1221.1 ID=mRNA_Ecto-sp13_S_contig11399.1221.1|Name=mRNA_Ecto-sp13_S_contig11399.1221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11399:2160..2681+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGACAGCGACAGCGACAGCGACGGGGGCGAGAGTCGCGACGACGCCGC
GCGGGCGGAGGAGAGGCTCCGCTGCTTCCTCGTGGACGCGAGCCCGCTGC
ACGCGATGGCGCTCGTGGTTGCCGCCGCCAAGGGCCGGCCGGACTGGGAG
TCATGGACGTACACACGCCCGGCCCTGCTCCCACCCCCCGGCGTTGCGAC
GTCGTGTACGGCGGCGGCCGCGGCGGAGGGGAAGAGAGGAGGAGAACCGC
CGTCTGTCGCGGTGATGGCCGACCACGATGGTGATGACATCGCTGGCGGC
TGCGGTGGCAGCGATGAAGACAATTATGGCGCCGGTGGTATTGGGATGCG
GTCTGCCTCGCGCCGAACCAGCGACAGCTGGATAGCGCCCCAGCTGCGGC
TAAGGTCCAGAGGCGTCGATGGCCCCTCTGCGGTAGAGTCCGCGCCGGCG
GCGGCGGCGGCGGTGGCGAGCTCGACATCCCTTTTTGGACTCCGTGGCAG
GCGGCAGTCGCTTCCGGCTAGC
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