mRNA_Ecto-sp13_S_contig100831.115.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100831.115.1
Unique NamemRNA_Ecto-sp13_S_contig100831.115.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100831.115.1 vs. uniprot
Match: D7FS86_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS86_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.520e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    4 IGDSFGDIFRDLVGGIASVGGRGGVLNDVVDFLENQV 114
            IGDSFGDIFRDLVGGIASVGG GGVLNDVVDFLENQV
Sbjct:  182 IGDSFGDIFRDLVGGIASVGGGGGVLNDVVDFLENQV 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100831.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS86_ECTSI6.520e-1497.30Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100831contigEcto-sp13_S_contig100831:216..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score72.8
Seed ortholog evalue3.9e-11
Seed eggNOG ortholog2880.D7FS86
Model size114
KEGG koko:K09510,ko:K09511
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
Cds size114
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462506.5787542-CDS-Ecto-sp13_S_contig100831:215..3291681462506.5787542-CDS-Ecto-sp13_S_contig100831:215..329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100831 216..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100831.115.1prot_Ecto-sp13_S_contig100831.115.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100831 216..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100831.115.1

>prot_Ecto-sp13_S_contig100831.115.1 ID=prot_Ecto-sp13_S_contig100831.115.1|Name=mRNA_Ecto-sp13_S_contig100831.115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
SIGDSFGDIFRDLVGGIASVGGRGGVLNDVVDFLENQV
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mRNA from alignment at Ecto-sp13_S_contig100831:216..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100831.115.1 ID=mRNA_Ecto-sp13_S_contig100831.115.1|Name=mRNA_Ecto-sp13_S_contig100831.115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100831:216..329+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAATAGGCGATAGCTTCGGCGACATTTTCCGAGACTTGGTTGGAGGCAT
CGCGTCGGTGGGAGGGCGGGGCGGGGTGTTGAACGACGTTGTCGATTTCT
TGGAGAACCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100831:216..329+

>mRNA_Ecto-sp13_S_contig100831.115.1 ID=mRNA_Ecto-sp13_S_contig100831.115.1|Name=mRNA_Ecto-sp13_S_contig100831.115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100831:216..329+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAATAGGCGATAGCTTCGGCGACATTTTCCGAGACTTGGTTGGAGGCAT
CGCGTCGGTGGGAGGGCGGGGCGGGGTGTTGAACGACGTTGTCGATTTCT
TGGAGAACCAGGTG
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