mRNA_Ecto-sp13_S_contig11231.1094.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11231.1094.1
Unique NamemRNA_Ecto-sp13_S_contig11231.1094.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11231.1094.1 vs. uniprot
Match: D7G3C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C3_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.060e-74
Identity = 198/246 (80.49%), Postives = 202/246 (82.11%), Query Frame = 1 
Query:   52 SGDGGVLFDLVIASDVIYSVSVVEPLFLTVGELLRPRRCSFSSREKPGEV-CVKGAVETGAGEARPPREPEPGKGGEAVERQQAAGTGRGGSGSIVPQEEVPVLSTPKPPLRERGPFDDEGSXXXXXXXXXXADGMPVFLMSQSFGYDTETEKTIERVCLEQGLVREVVWDELHLAPTTLATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLV-SRPLRAGTKLQRFWRA 783
            SG GGVLFDLVIASDVIYSVSVVEPLFLTVGELLRPR C   SREK GEV C +GAVETGAGEARPPREP PGKG EAVER+QAAGTG  GSGSIVP+EEVPVLS                 XXXXXXXXXXADG PVFLMSQSFGYD ETEKTIER C+EQGLVREVVWDELHLAPTT    XXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXLLV SRPLRAGTKLQRFWRA
Sbjct:  220 SGGGGVLFDLVIASDVIYSVSVVEPLFLTVGELLRPRCCPCPSREKRGEVFCAEGAVETGAGEARPPREPAPGKGEEAVERRQAAGTGGDGSGSIVPEEEVPVLSPXXXXXXXXXXXXXXXXXXXXXXXXXXADGTPVFLMSQSFGYDPETEKTIERACVEQGLVREVVWDELHLAPTTPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEHPSPXXXXXXXXXXLLVVSRPLRAGTKLQRFWRA 465
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BLAST of mRNA_Ecto-sp13_S_contig11231.1094.1 vs. uniprot
Match: A0A6H5KXF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF9_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 5.340e-43
Identity = 160/241 (66.39%), Postives = 162/241 (67.22%), Query Frame = 1 
Query:   64 GVLFDLVIASDVIYSVSVVEPLFLTVGELLRPRRCSFSSREKPGEVCVKGAVETGAGEARPPREPEPGKGGEAVERQQAAGTGRGGSGSIVPQEEVPVLSTPKPPLRERGPFDDEGSXXXXXXXXXXADGMPVFLMSQSFGYDTETEKTIERVCLEQGLVREVVWDELHLAPTT-LATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVSRPLRAGTKLQRFWRA 783
            GVLFDLVIASDVIYSVSVVEPLFLTVGELLR R CSFSSREKPGE            EARPPREPEPG+                                                XXXXXXXXXXAD  PVFLMSQSFGYD ETEK+IER CLEQGLVREVVWDELHLAPTT     XXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXX LLVSRPLRAGTKLQRFW A
Sbjct:  217 GVLFDLVIASDVIYSVSVVEPLFLTVGELLRRRCCSFSSREKPGE------------EARPPREPEPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADNTPVFLMSQSFGYDAETEKSIERACLEQGLVREVVWDELHLAPTTPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEHPSXXXXXXXXXXXLLLVSRPLRAGTKLQRFWHA 445
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11231.1094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3C3_ECTSI1.060e-7480.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXF9_9PHAE5.340e-4366.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11231contigEcto-sp13_S_contig11231:2..1716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.4
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog2880.D7G3C3
Model size1715
KEGG koko:K21804
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Lysine methyltransferase
EggNOG OGs28K01@1,2QSEH@2759
Cds size333
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.6698377-UTR-Ecto-sp13_S_contig11231:1..4541681462586.6698377-UTR-Ecto-sp13_S_contig11231:1..454Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11231 2..454 +
1681462586.7000911-UTR-Ecto-sp13_S_contig11231:787..17161681462586.7000911-UTR-Ecto-sp13_S_contig11231:787..1716Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11231 788..1716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.6838224-CDS-Ecto-sp13_S_contig11231:454..7871681462586.6838224-CDS-Ecto-sp13_S_contig11231:454..787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11231 455..787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11231.1094.1prot_Ecto-sp13_S_contig11231.1094.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11231 455..787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11231.1094.1

>prot_Ecto-sp13_S_contig11231.1094.1 ID=prot_Ecto-sp13_S_contig11231.1094.1|Name=mRNA_Ecto-sp13_S_contig11231.1094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MPVFLMSQSFGYDTETEKTIERVCLEQGLVREVVWDELHLAPTTLATTQE
RQEQQEPPPPEQRQQRGADEAAAKGEHSSPARREGGGKEELLLVSRPLRA
GTKLQRFWRA*
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mRNA from alignment at Ecto-sp13_S_contig11231:2..1716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11231.1094.1 ID=mRNA_Ecto-sp13_S_contig11231.1094.1|Name=mRNA_Ecto-sp13_S_contig11231.1094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11231:2..1716+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATGGAAGCGATGACGACGGCAGTGATGATGATGATGATGGCGACAG
CAGCGGTGACGGTGGCGTGCTTTTCGATCTGGTGATCGCGAGCGACGTGA
TATACTCGGTGTCGGTGGTGGAGCCTCTTTTTCTGACAGTCGGCGAGCTC
CTCCGTCCTCGTCGTTGCTCTTTTTCCTCGAGGGAGAAGCCGGGCGAGGT
CTGCGTGAAAGGGGCGGTAGAGACGGGGGCGGGGGAGGCAAGGCCGCCAC
GGGAACCCGAACCAGGCAAAGGGGGAGAGGCGGTAGAGAGGCAACAAGCG
GCGGGGACAGGGAGGGGCGGGAGTGGTAGCATCGTTCCGCAGGAGGAAGT
GCCGGTATTGTCTACGCCGAAGCCTCCATTACGTGAGCGTGGTCCGTTTG
ACGACGAAGGCTCGTCTGCTAGCGGCGGCGGCGGCGGCGGCGGCGCTGAC
GGCATGCCCGTGTTCTTGATGTCCCAGAGCTTCGGGTACGACACAGAGAC
CGAGAAAACGATCGAGCGGGTCTGCCTGGAGCAGGGCTTGGTTCGAGAGG
TGGTGTGGGACGAGCTCCACCTCGCACCCACAACTCTAGCAACAACCCAG
GAGCGTCAAGAACAGCAAGAGCCGCCACCACCCGAACAGCGGCAGCAACG
GGGGGCCGATGAGGCGGCCGCGAAAGGGGAACACTCCTCTCCCGCAAGGA
GGGAAGGGGGGGGAAAAGAGGAGCTGCTGTTGGTGTCGCGGCCGCTACGG
GCGGGAACCAAGCTGCAACGGTTCTGGCGAGCATGACATTGATTCCTCCT
CCTCCTCCTACACCTCCTCCTCCTCCTCCCCCTAACTGTTGCTCTTTGGG
CGGTACGGGGGGGGGCGCAAGAGATTTTTTCGTGTGTTGCGCCTTTGTCT
CCGCCGTCCCGTCTTGATCTTCCGCGGCGGTGGAAGGTCGGCATCGGGAC
GGGGATGTCATGATCGACCAATCAAACGCGTGGGTTGTCGAGGATCGACC
GATCGCATCATGTTTGCTTTCTTCTTTTTCTCCGCAGCACTTTTTGGAAC
TGCTGCTGTCGCGCCTGTGATTGGCGCTGCGATGGGCGTGCGATGCTGTT
GTGGCTGTTATCGTGGTTGATCGTGGTCGTTATTTTTGCTGCCCTTTCCT
TCCCGTCCGGGATGACTTGTTGGAGGTACCGGAGAAAGAGAAAAATTAGT
AGGCCCAGAGACCGTCCACCAGTTTCTTTAGTCTCGAAACAATCATTGCG
ATACTTTTCAGTTGCCGCAGCCGTGCTTGAGGAGTTGGCGCGCCATTGGT
GTCCCGTGCACCGTGGGATCCTCGGGGTTAGTTGCCGACGGTTGCCGACG
GGCGTGTGGTAGGAAACGCATTTCGACGCGGGTGACACTGATGCGTCGTC
ATCTTCACGTCAACAAAGCGCTACTGCTGATATGACACGTGGTCCGTCCA
ACATTCGGACAACGTCCAAATTGCGGGTCGCTCTACTTGTTGTGGTCATG
ATTACCGCCACAGCTCTCCCCAGAACCATTTCGAACACGGACCTTGGCCG
CCTCTATTTTAATAAGACCGTCGTGTAGGCGAAACGACTGATTGTGAGAT
TGTACATGCTCCTGTCCCATCTGCCAAAGTTCGGGCTAACATGGCGGCTC
TAGGGCGCGCTCCTGCTCCCGCCCGGGCTTGCAAAGCGAGTACTCCCGGT
GTGAAGGTCCCAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11231:2..1716+

>mRNA_Ecto-sp13_S_contig11231.1094.1 ID=mRNA_Ecto-sp13_S_contig11231.1094.1|Name=mRNA_Ecto-sp13_S_contig11231.1094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11231:2..1716+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTGTTCTTGATGTCCCAGAGCTTCGGGTACGACACAGAGACCGA
GAAAACGATCGAGCGGGTCTGCCTGGAGCAGGGCTTGGTTCGAGAGGTGG
TGTGGGACGAGCTCCACCTCGCACCCACAACTCTAGCAACAACCCAGGAG
CGTCAAGAACAGCAAGAGCCGCCACCACCCGAACAGCGGCAGCAACGGGG
GGCCGATGAGGCGGCCGCGAAAGGGGAACACTCCTCTCCCGCAAGGAGGG
AAGGGGGGGGAAAAGAGGAGCTGCTGTTGGTGTCGCGGCCGCTACGGGCG
GGAACCAAGCTGCAACGGTTCTGGCGAGCATGA
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