mRNA_Ecto-sp13_S_contig11228.1091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11228.1091.1
Unique NamemRNA_Ecto-sp13_S_contig11228.1091.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: D7G209_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G209_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 2.180e-42
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 3
Query:    3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 203
            NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE
Sbjct:  631 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 697          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A6H5LC65_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC65_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.130e-41
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 3
Query:    3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 203
            NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW SGLG+
Sbjct:  636 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWGSGLGD 702          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A482S199_9ARCH (DUF2009 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S199_9ARCH)

HSP 1 Score: 104 bits (259), Expect = 1.610e-27
Identity = 45/59 (76.27%), Postives = 48/59 (81.36%), Query Frame = 3
Query:    3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
            N +M ILSDFFKHG+DGSGDDGGSCIDGRLTSAWNWCS L KKPF  +F   G  GFDG
Sbjct:   41 NLRMQILSDFFKHGFDGSGDDGGSCIDGRLTSAWNWCSQLHKKPFYHVFMFTGFQGFDG 99          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A813GID5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GID5_POLGL)

HSP 1 Score: 103 bits (258), Expect = 3.500e-27
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 3
Query:    9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGWSSGLGE 203
            +M I+ DFF+HG+DGSGDDGGSCIDGRLTS WNWC+ + KK + P F L G  GFDGG+++GLG 
Sbjct:   56 RMTIMQDFFRHGFDGSGDDGGSCIDGRLTSCWNWCAKVEKKKYFPAFLLTGFTGFDGGFTTGLGN 120          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S2UYK9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.550e-26
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 3
Query:    3 NAKMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW 185
            + KM ILSDFFKHG+DG GDDGGSCIDGRLTSAWNWCS + KK +  +F L G  GFDG W
Sbjct:   79 DVKMHILSDFFKHGFDGDGDDGGSCIDGRLTSAWNWCSKIAKKKYYNVFMLGGFQGFDGDW 139          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S0Y5A1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y5A1_HEMAN)

HSP 1 Score: 103 bits (258), Expect = 9.790e-26
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 3
Query:   15 AILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
            AIL DFFKHG+DGSG DGGSCIDGRLTSAWNWCS L KKPF P+F LAG  GFDG
Sbjct:  198 AILCDFFKHGFDGSGSDGGSCIDGRLTSAWNWCSKLEKKPFYPVFLLAGFQGFDG 252          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S0HDZ9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HDZ9_9CRYP)

HSP 1 Score: 100 bits (249), Expect = 3.690e-25
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
            + +IL+DFFKHG+DGSG DGGSCIDGRLTSAWNWCS L KK + PIF LAG  GFDG
Sbjct:  116 RKSILADFFKHGFDGSGSDGGSCIDGRLTSAWNWCSKLEKKSYYPIFLLAGFQGFDG 172          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A6V1PHG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PHG9_HETAK)

HSP 1 Score: 101 bits (251), Expect = 4.230e-25
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 3
Query:    9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW 185
            KM IL+DFFKHG+DG GDDGGSCIDGRLTSAWNWCS L KK +  +F L+G  GFDG W
Sbjct:  150 KMEILADFFKHGFDGDGDDGGSCIDGRLTSAWNWCSRLGKKRYYHVFNLSGFQGFDGDW 208          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: A0A7S0W1R3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W1R3_9CRYP)

HSP 1 Score: 103 bits (258), Expect = 4.660e-25
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 3
Query:   15 AILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDG 179
            AIL DFFKHG+DGSG DGGSCIDGRLTSAWNWCS L KKPF P+F LAG  GFDG
Sbjct:  284 AILCDFFKHGFDGSGSDGGSCIDGRLTSAWNWCSKLEKKPFYPVFMLAGFQGFDG 338          
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Match: D6PJ38_9ZZZZ (Predicted protein n=1 Tax=uncultured organism MedDCM-OCT-S04-C2 TaxID=743613 RepID=D6PJ38_9ZZZZ)

HSP 1 Score: 103 bits (256), Expect = 4.300e-24
Identity = 43/59 (72.88%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    9 KMAILSDFFKHGWDGSGDDGGSCIDGRLTSAWNWCSLLPKKPFAPIFYLAGQYGFDGGW 185
            +M ILSDFFKHG+DGSGDDGGSCIDGRLTS WNWCS L KKP+  +F   G  GFDG W
Sbjct:  476 RMQILSDFFKHGFDGSGDDGGSCIDGRLTSTWNWCSKLHKKPYYHVFMFTGFQGFDGDW 534          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11228.1091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G209_ECTSI2.180e-42100.00B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LC65_9PHAE2.130e-4197.01B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A482S199_9ARCH1.610e-2776.27DUF2009 domain-containing protein (Fragment) n=1 T... [more]
A0A813GID5_POLGL3.500e-2764.62Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2UYK9_9STRA2.550e-2670.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0Y5A1_HEMAN9.790e-2681.82Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0HDZ9_9CRYP3.690e-2575.44Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A6V1PHG9_HETAK4.230e-2572.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0W1R3_9CRYP4.660e-2581.82Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
D6PJ38_9ZZZZ4.300e-2472.88Predicted protein n=1 Tax=uncultured organism MedD... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11228contigEcto-sp13_S_contig11228:4685..5507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size220
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.2921925-CDS-Ecto-sp13_S_contig11228:4684..48651681462586.2921925-CDS-Ecto-sp13_S_contig11228:4684..4865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11228 4685..4865 -
1681462586.3013947-CDS-Ecto-sp13_S_contig11228:5469..55071681462586.3013947-CDS-Ecto-sp13_S_contig11228:5469..5507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11228 5470..5507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11228.1091.1prot_Ecto-sp13_S_contig11228.1091.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11228 4685..5507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11228.1091.1

>prot_Ecto-sp13_S_contig11228.1091.1 ID=prot_Ecto-sp13_S_contig11228.1091.1|Name=mRNA_Ecto-sp13_S_contig11228.1091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
KTPRWPSCRTFSSTDGMAQATMGGLVSTDGSPLRGTGAPFCPRSLSRRSS
TSPGSTALTGGGVAGSENSDPF*
back to top

mRNA from alignment at Ecto-sp13_S_contig11228:4685..5507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11228.1091.1 ID=mRNA_Ecto-sp13_S_contig11228.1091.1|Name=mRNA_Ecto-sp13_S_contig11228.1091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11228:4685..5507- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACGCCAAGATGGCCATCCTGTCGGACTTTTTCAAGGTGAGCAAAATG GGCGTGTTTTTTTAGTGCGGTACGAAACGTGCACTCCCTCGTGAAGCAGG AAGGTGTTGGGATGGACACAACCGCTCGTGTAACGACAAGCTTAGCTCAC TCATTTTCGTAGTGTACCGTGCTGTCGGGAGGTTTTCCGGGTTTGTTCTC ACTGACGATCAACATGTAGATGAAGCGGCGTAAAAGTGTACTTTTCACCT TGTTGATCGTTCTCTAAACTTAATGGGCGCTCCAACAACGGTCGTGTTTC TCGCATTTAAGTCGTCGAACCGGTCATCGGGTTTTGTTGTTTTCCCCTCG TAAATAGCTGCACTTTGCTCTGACAAGTGCTTGTCCGGAGGTCCTTCGTT TTGCTGGCAAGTCAACAGGCGTATCGAACAGCAACCCTCAAAATCCGAAT GTCTTGAAACTCCCCGAACACCACGGTCGACTTTGTTTTCCTCTTTTCTC TTGAGATAAATGAGCAAGATCCAAACTCTTCTCCTAGTACCCTCATTGTT TGCACACTCTAAGCACCGCACTGCTACCGAATGCCCCTGCTGCCGATTTG TTCTCGCGTTTGTATGTTTTTGTGTGTGTTTTCCCTCACCAGCACGGATG GGATGGCTCAGGCGACGATGGGGGGTCTTGTATCGACGGACGGCTCACCT CTGCGTGGAACTGGTGCTCCCTTCTGCCCAAGAAGCCTTTCGCGCCGATC TTCTACCTCGCCGGGCAGTACGGCTTTGACGGGGGGTGGAGTAGCGGGCT CGGAGAATAGCGACCCGTTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11228:4685..5507-

>mRNA_Ecto-sp13_S_contig11228.1091.1 ID=mRNA_Ecto-sp13_S_contig11228.1091.1|Name=mRNA_Ecto-sp13_S_contig11228.1091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11228:4685..5507- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACGCCAAGATGGCCATCCTGTCGGACTTTTTCAAGCACGGATGGGAT
GGCTCAGGCGACGATGGGGGGTCTTGTATCGACGGACGGCTCACCTCTGC
GTGGAACTGGTGCTCCCTTCTGCCCAAGAAGCCTTTCGCGCCGATCTTCT
ACCTCGCCGGGCAGTACGGCTTTGACGGGGGGTGGAGTAGCGGGCTCGGA
GAATAGCGACCCGTTTTGA
back to top