mRNA_Ecto-sp13_S_contig11227.1090.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11227.1090.1
Unique NamemRNA_Ecto-sp13_S_contig11227.1090.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11227.1090.1 vs. uniprot
Match: D7G3Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 4.210e-107
Identity = 200/266 (75.19%), Postives = 201/266 (75.56%), Query Frame = 1 
Query:   19 RFGRAGASVLQDGSASLIAGVDEEDEEEAEGGARGGGVDGKSSSQTRRLSQSGKSRGPSGESRRGSAESTSDQRQRQVGTQRRRSSRPSTQVETRRASGDSGGLSKRRGAPPMGPIPSMTDAALKDLIETSLNEEKIARAPLLRTSTSPNPTPLKVVLMGRVLIPSSKGTSIPTGSNGRDKPRASRSRVHSVCIVMEDRTSSAGSYWSGSVRDITVHPGPEGREVVEKTVVTNRGWNIKGLSGVEKRDGTRETEGAAFTLTFETGR 816
            RFGRAGASVLQDGSASLIAGVDE                                                             SSRPSTQVETRRASGDSGGLSKRRGAPPMGP+PSMTDAALKDLIETSLNEEK ARAPLLRTSTSPNPTPLKVVLMGRVLIPSSKG SIPTGSNGRDKPRASRSRVHSVCIVMEDRTSSAGSYWSGSVRDITVHPGPEGRE  EKTVVTNRGWNIKGLSGVEKRDGTRETEGAAFTLTFETGR
Sbjct:   23 RFGRAGASVLQDGSASLIAGVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRPSTQVETRRASGDSGGLSKRRGAPPMGPVPSMTDAALKDLIETSLNEEKTARAPLLRTSTSPNPTPLKVVLMGRVLIPSSKGASIPTGSNGRDKPRASRSRVHSVCIVMEDRTSSAGSYWSGSVRDITVHPGPEGREFAEKTVVTNRGWNIKGLSGVEKRDGTRETEGAAFTLTFETGR 288
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11227.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y9_ECTSI4.210e-10775.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11227contigEcto-sp13_S_contig11227:468..4564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score350.1
Seed ortholog evalue9.4e-94
Seed eggNOG ortholog2880.D7G3Y9
Model size846
KEGG koko:K18412,ko:K19983
Hectar predicted targeting categoryother localisation
GOsGO:0000145,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016192,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0031267,GO:0031503,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0046903,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051601,GO:0051641,GO:0070727,GO:0071944,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936
Exons6
EggNOG free text desc.exocyst localization
EggNOG OGsKOG2148@1,KOG2148@2759
Cds size846
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11227.1090.1prot_Ecto-sp13_S_contig11227.1090.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11227 468..4564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462586.2016203-CDS-Ecto-sp13_S_contig11227:467..6071681462586.2016203-CDS-Ecto-sp13_S_contig11227:467..607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11227 468..607 -
1681462586.2128-CDS-Ecto-sp13_S_contig11227:1270..13731681462586.2128-CDS-Ecto-sp13_S_contig11227:1270..1373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11227 1271..1373 -
1681462586.224394-CDS-Ecto-sp13_S_contig11227:1737..18581681462586.224394-CDS-Ecto-sp13_S_contig11227:1737..1858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11227 1738..1858 -
1681462586.2366223-CDS-Ecto-sp13_S_contig11227:2201..22631681462586.2366223-CDS-Ecto-sp13_S_contig11227:2201..2263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11227 2202..2263 -
1681462586.2486372-CDS-Ecto-sp13_S_contig11227:3437..36821681462586.2486372-CDS-Ecto-sp13_S_contig11227:3437..3682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11227 3438..3682 -
1681462586.266528-CDS-Ecto-sp13_S_contig11227:4389..45641681462586.266528-CDS-Ecto-sp13_S_contig11227:4389..4564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11227 4390..4564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11227.1090.1

>prot_Ecto-sp13_S_contig11227.1090.1 ID=prot_Ecto-sp13_S_contig11227.1090.1|Name=mRNA_Ecto-sp13_S_contig11227.1090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
MFFFCRRFGRAGASVLQDGSASLIAGVDEEDEEEAEGGARGGGVDGKSSS
QTRRLSQSGKSRGPSGESRRGSAESTSDQRQRQVGTQRRRSSRPSTQVET
RRASGDSGGLSKRRGAPPMGPIPSMTDAALKDLIETSLNEEKIARAPLLR
TSTSPNPTPLKVVLMGRVLIPSSKGTSIPTGSNGRDKPRASRSRVHSVCI
VMEDRTSSAGSYWSGSVRDITVHPGPEGREVVEKTVVTNRGWNIKGLSGV
EKRDGTRETEGAAFTLTFETGRRYGAKCFRL*
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mRNA from alignment at Ecto-sp13_S_contig11227:468..4564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11227.1090.1 ID=mRNA_Ecto-sp13_S_contig11227.1090.1|Name=mRNA_Ecto-sp13_S_contig11227.1090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4097bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11227:468..4564- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTTTTTTTGTCGCAGGTTTGGTCGCGCGGGCGCTTCCGTCCTCCA
AGATGGTTCAGCCAGCCTTATAGCGGGGGTAGACGAGGAGGACGAGGAGG
AGGCTGAGGGAGGGGCGCGGGGTGGCGGGGTAGATGGCAAGTCTTCGTCC
CAGACGAGAAGACTTTCCCAGTCGGGTGAGCGGAAAACCCGCGTTTTCGT
AGCTCATCGTAGATTCGTTTCGAGCCACCGCCGTCTCGAGCCAGGCAGAG
GTGCAAATAAGTCACCACAGGGAGCAACACGAAAAGCAAGAATGCACCAT
GCCACGAAAGCGGGATTGTGCATAACACGTTGTGTCGCACACATATGCTA
CCCCCTGTTTGGACTTTGCTTGCTTTTCTTTCCTACACAACAGAAAAGGT
GTTAAACCAAGAAATCGCACTCCTTACTGCAGTGGGTGTCTTTTACTCCG
ATAGGAGATGCCGCCTGTCGTCATCTTCCTCTTGCGATGGGGAGGTTCTT
GTCACTGAATGCTCAACGACGCGAGAAAATAATAGAAATCTCATTCTTCG
TGCGAAGGAATTCCGTTGTCCAAGGGCGGGTGGTGTTTTGCGATTGTACA
GGCAGATGTTTGCATTGTACGGTGGGGGGTGCGTGTCCTACCTTATGCGG
CAGAGTGAAAAGACTGTACACATTTGATGAATTTTTGTTTTTTGGTTCGT
GGGAAACGTCATGACTGGCAAGCTGGCAGCCACCCTGCGGACTGTCCTTC
TTCCTGTCTTGCTGCATCACCCCTTCATGACACTGCTGTGCTTTCATGAG
CCTACCTACTCCGGAGCTTTCAATTGTACCTATGGTAAGAGTCACACTTG
CTATTGTTTAACCACCGCGCTGAAATGCGCAGGCAAGAGCAGGGGGCCCT
CCGGCGAAAGCCGTAGGGGTTCCGCAGAATCCACTTCGGACCAACGGCAG
CGGCAAGTGGGGACACAGCGGCGTCGGTCAAGCCGGCCTTCCACCCAGGT
GGAAACCCGACGGGCTAGCGGCGACTCCGGTGGCCTTTCGAAGAGACGCG
GAGCACCCCCGATGGGGCCGATCCCGTCCATGACCGACGCCGCCCTCAAG
GACCTGATCGAAACCTCGCTCAATGAGGTACGCTGTGCTGTGCCCTAGTC
TGATGTATGGCTTCTGTTCTTAAGCTTTTTTCATGTCTTGCTTGTTGGCG
GAGCAGCATTTTGTGGGCGCTGAGTTCAGGGTTGTTGATACAGCAGCAGT
TGTGTTAGCTGATTGAGGCCGCATTGTGCCAAAGAATGTGTCCGGCCGCT
GAATATGGCCGCAAGTTGCCCAGGGATGTTGCCGGCCTTGTATACCGGTC
ACCCGGCCTTATGTTCAGAGTATGAAAGGAGTTGGAGTTCCGTCTGTATC
ACCGGGTTTGCGCCGGGGGGTCAGCCATGTTCGTGCGGTCTCATACGAGG
GCCAGCACTGATGTGTGGTTCAGATCCTGTGTTAGTACCGCGCCTTGTTG
CTTTTTACCTGTTGCGTTTTACTGTAAGCCGTAGTTGTTGTTGTTGTTGT
TGTTGCCGTTGTCGTTGCTGGTAGTCCACCACTCGTCGTCTTTGCACTAA
GAACCGCGCCCCGGTTGCTGCTCAGCTTCTAACTACCAGGTTTCTGTACC
GGTAACACTCGCGCGGACGCCGCCTTATGTGTACCCCCAAACAAAGTGGT
ACAAGAGTGCACGCGATGAAAAATCAAAGAGGAAACACAACGTGCTGTTT
TCGTTCGTAACGGTGGTCATCTCAATGGCCGACGCCGTGTGAATGGCCGC
ATGCAAAGCTAGCGTTCACCCCAATCTAGTGCGCTTTCAACAGCTCTGTT
TCCGCCGCTTTTCATTGTTTTTTCTGGGTTTTTCAAGGGTTGTTGCTGCT
GTTGGTTCGGCACTTGCGGTTGCGGTTTGCAGGTAGATACACATAAGTTT
TTGTTGTGTTTTCCTTCTCCACCCCTGACTTTGGATGTTTTGGTCACACG
GCGTGCACACTCTGCAACCGCTGCGCATGCGCGGGCCTCTTTTGCCTCCG
ATCGTCTTCGATACGTTCGCTGGCGTTGGCGTGGTGCCGATGAGATTCCC
CCTACCCACCCCCCATATCAATACCCGAGCCACCTTTGGCAAGGTAGTTT
GGCCATCGGTGATTGGCCCTGTGGGAACAATGCTCTGTCCTCTCGAGGAC
GCGTGTTCAATGGTCTACCAATTCAGGTAGAAAAATTTGAGTACACTCCC
CAAATTTGCACTCACGGCGCCCCTTTTATGTGTTTTATTTTACCGTCTCA
GGAGAAGATCGCGAGAGCACCGCTCCTCAGGACATCCACCTCGCCCAACC
CCACACCTCTCAAGTAAGTGCACCGCCCATGTCTCCGCCCCCTTCCGGGC
TGTGTACCAGTACTGGAGTGCTGCGTTCTGTTTTGAGACAAGATGGGTGG
AGGGGGGAGGGGGTGTACTCAGATGGGTAGATCGGCACATAATTTTAGGA
AGGTGAAAGAGTTTGGGGAAGTCGACGCAGCAGAGGCCGGAACCAAGCCA
ACTTGGACCACGGTGCGTGCTTGATGAGCGGGACACATCAAAGCAAGCCG
GCAGTCAACCAACTCGTTAAGCACGCCGTAGGTTCACGTCCAACCGCTTG
TCAAAGCGAGCCGCAACACGAGGCACACTGCTCGCTGCGCTTATCTGTCT
TTGCAGGGTGGTGCTTATGGGACGTGTGCTAATTCCCTCCTCCAAGGGCA
CTTCCATCCCGACGGGATCCAACGGACGGGATAAGCCCAGAGCCAGCCGA
TCAAGGGTGCACTCTGTCTGCATCGTGGTAGGTACCGAGGGACAGATAGG
CACGCTTCTGTAGTTTACTACAGCCGTTTCGCGATTCTATGTACTCCGTT
GTGCTAGTCAACGACGTGTAGACACAGGGACAACCGGCCCTGCATCCGCA
CTGGTCCAACAGACTCGGATCAATTCCGTGGCATTTTGTGGATATGCTCT
TGTTCTGTTATGCGTGTCGATGTAGACGATGGCATCAGATTGAACAGCAT
CAGCTCGGTGTATTCCTGTATTGTCCAGGCTCTTTTGATTTTTTGTATTT
TTTTTGTGCATCGACCGCGCTGACCGGCTGACCAATGTTTTCATGTATTT
TCATTCTCTGCTTTTTGTGTCGATGTATATGATGAAAACAGATGGAAGAC
AGGACCAGCTCGGCGGGCTCCTATTGGTCAGGCTCCGTGAGAGACATCAC
CGTGCACCCGGGCCCAGAAGGCCGCGAGGTCGTGGAGAAGACAGGTCAGG
TGGCTTTCCCTCACCCCATCCCTTGCCCTGAGGGCTGACACCTGCTTACG
ATACCTCAGGCTCGAAACGCAGGCTCAAGCCACCAACTGTGGAGCATTGC
GTGCGGGTGTTGGGTTTCGATTGTGCATTCGTACGTCTGAGCTAGCGGGT
CAGTTTTAATTCCGACTTCCGGGTCTACTGAAACGGGCTTGGCAATCGAA
ACAGAAGAAAATGTACCCATCAACTCATCCGAAATCGTCGGAGTAATGGT
ATTGAGACCGACGGACTGACTACTGATGCTTACTAACAGGTTCCTATTGA
CCCCGCGTTGGTTTGCGGAGATTTTTTTTTTTTTGTATAATAACCAAGCG
TACCGCTGACTTTCTAGTCCACGCCAGCTCTGGCGGGCAGTTTGAGTCGA
GATGGCCCTGGAAACCATTTTTTTTTGCTCAATCAAGGGCATATGTGTTG
TTTGTCTTCTGGTAGCTGTGCTTCTGTACGGTAACGTGTGCTGTTGCCCC
GATTCCAGTCGTCACCAAGTCCTCAGCAGCTCCTAAGCGCAATTGTCTTG
CAAGTCGCAATTGTCCTCAAGTCACACGCGTGTGTTTGTTCTCTCGTGAA
TAGTTCCTCTCGATGGCGACGTGACCTTTGCCCCTGTTGCTCTTGCTGTT
GTTCCAGTCGTGACGAACCGTGGGTGGAACATTAAGGGGCTTTCTGGTGT
TGAGAAGAGAGATGGGACCCGGGAGACGGAGGGAGCGGCGTTCACCCTCA
CCTTCGAGACGGGCAGAAGGTATGGCGCGAAGTGCTTCCGTTTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11227:468..4564-

>mRNA_Ecto-sp13_S_contig11227.1090.1 ID=mRNA_Ecto-sp13_S_contig11227.1090.1|Name=mRNA_Ecto-sp13_S_contig11227.1090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11227:468..4564- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTTTTTTTGTCGCAGGTTTGGTCGCGCGGGCGCTTCCGTCCTCCA
AGATGGTTCAGCCAGCCTTATAGCGGGGGTAGACGAGGAGGACGAGGAGG
AGGCTGAGGGAGGGGCGCGGGGTGGCGGGGTAGATGGCAAGTCTTCGTCC
CAGACGAGAAGACTTTCCCAGTCGGGCAAGAGCAGGGGGCCCTCCGGCGA
AAGCCGTAGGGGTTCCGCAGAATCCACTTCGGACCAACGGCAGCGGCAAG
TGGGGACACAGCGGCGTCGGTCAAGCCGGCCTTCCACCCAGGTGGAAACC
CGACGGGCTAGCGGCGACTCCGGTGGCCTTTCGAAGAGACGCGGAGCACC
CCCGATGGGGCCGATCCCGTCCATGACCGACGCCGCCCTCAAGGACCTGA
TCGAAACCTCGCTCAATGAGGAGAAGATCGCGAGAGCACCGCTCCTCAGG
ACATCCACCTCGCCCAACCCCACACCTCTCAAGGTGGTGCTTATGGGACG
TGTGCTAATTCCCTCCTCCAAGGGCACTTCCATCCCGACGGGATCCAACG
GACGGGATAAGCCCAGAGCCAGCCGATCAAGGGTGCACTCTGTCTGCATC
GTGATGGAAGACAGGACCAGCTCGGCGGGCTCCTATTGGTCAGGCTCCGT
GAGAGACATCACCGTGCACCCGGGCCCAGAAGGCCGCGAGGTCGTGGAGA
AGACAGTCGTGACGAACCGTGGGTGGAACATTAAGGGGCTTTCTGGTGTT
GAGAAGAGAGATGGGACCCGGGAGACGGAGGGAGCGGCGTTCACCCTCAC
CTTCGAGACGGGCAGAAGGTATGGCGCGAAGTGCTTCCGTTTGTAA
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