prot_Ecto-sp13_S_contig11224.1087.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11224.1087.1
Unique Nameprot_Ecto-sp13_S_contig11224.1087.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length440
Homology
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A6H5JZ89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ89_9PHAE)

HSP 1 Score: 402 bits (1032), Expect = 6.390e-134
Identity = 350/408 (85.78%), Postives = 352/408 (86.27%), Query Frame = 0
Query:    1 MAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXDQT-GESPRSGVYPAGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXXRANIPQHSPRGAPGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------AVAGRGPLRESSPNKAAAFRNS--GSGXXXXXSAG---HRRLVDPVVDPGGXXXXXXXAPAMPSLRGSPAFDYAVGDGDGDGGTSRPAGEPPTTTAARXXXXXXXDGGCGGEGDEYDMSQADFGSAFMEIDSLIQQHSTSSLSGGSAYETLAAG 396
            MAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQM DKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXX    G SPRSGVYPAGRPXXXXXXXXXXXXXXXXX           RSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXXRANIPQHSPR A GN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      AVAGRGPL ESSPN AAAFRNS  GSGXXXXXSAG   HRR VDPVVDPG     XXXAPAMPSL GSPA D AVGD  GDGGTSRP GE        XXXXXXX  GCGGEGDEYDMSQADFGSAFMEIDSLIQQH+TSSLSGGSA +TLAAG
Sbjct:   17 MAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMTDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXXXXXGGSPRSGVYPAGRPXXXXXXXXXXXXXXXXX-----------RSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXXRANIPQHSPRVASGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAAVAGRGPLGESSPNNAAAFRNSAGGSGXXXXXSAGTAGHRRFVDPVVDPGRGNGGXXXAPAMPSLPGSPACDCAVGDRGGDGGTSRPPGEXXXXXXXXXXXXXXXXXGCGGEGDEYDMSQADFGSAFMEIDSLIQQHNTSSLSGGSADDTLAAG 413          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: D7FGZ9_ECTSI (DNA repair protein RAD52 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ9_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 7.150e-117
Identity = 332/428 (77.57%), Postives = 339/428 (79.21%), Query Frame = 0
Query:    1 MAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXDQTGESPRSGVYPAGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------RSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXX-RANIPQHSPRGAPGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----VAGRGPLRESSPNKAAAFRNSGSGXXXXX---------SAGHRRLVDPVVDPGGXXXXXXXAPAMPSLRGSPAFDYAVGDGDGDGGTSRPAGEPPTTTAARXXXXXXXDGGCGGEGDEYDMSQADFGSAFMEIDSLIQQHSTSSLSGGSAYETLAAG 396
            MAGATAIVRITVANGCGHEDVGNSHMKD+DKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  RSHIPNGRPHTPQPGQQ  PPLAGSXXXXXXXXXX   RANIPQHSPR A GN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          VAGRGPLRESSPNKAAAF N+  G   XX         ++GHRR VDP+VDPGG XXXXXX PAMPS  GSPAFDYAVGDG GD G SRP GEPPTTTAAR        G  GGEGDEYDMSQADFGSAFMEIDSLIQQH+TSSLSGGSA +TL AG
Sbjct:  100 MAGATAIVRITVANGCGHEDVGNSHMKDKDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSHIPNGRPHTPQPGQQ-APPLAGSXXXXXXXXXXPPPRANIPQHSPRVASGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMTAPGAAAVVAGRGPLRESSPNKAAAFENNAGGSGSXXXXXXXXXAGTSGHRRFVDPMVDPGGGXXXXXXTPAMPSFPGSPAFDYAVGDGCGDRGASRPPGEPPTTTAAR--------GREGGEGDEYDMSQADFGSAFMEIDSLIQQHNTSSLSGGSANDTLPAG 518          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A0A1UCM6_ENTIV (DNA repair and recombination protein RAD52, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1UCM6_ENTIV)

HSP 1 Score: 65.5 bits (158), Expect = 2.130e-8
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query:    3 GATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQ 77
            G TA+VR+T+ NG  HEDVG    +   KG  +   KK AV+DA+KRALRLFG  LG+ + D + +++ +  HKQ
Sbjct:   84 GVTAVVRVTLKNGSYHEDVGVGMAEMPRKGAAIELAKKEAVSDARKRALRLFGNYLGNSLYDTDYVRQLDTNHKQ 158          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: UPI000644DBF2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DBF2)

HSP 1 Score: 63.2 bits (152), Expect = 6.500e-8
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 0
Query:    2 AGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLK 69
            AGA+AI+RI + +G  H+DVG    +D +KG  +   KK AV+DA+KR+LR+FG  LG+++ DK+ LK
Sbjct:   89 AGASAIIRIMLKDGTFHDDVGFGMREDSNKGTSIEHAKKEAVSDARKRSLRVFGNALGNKLYDKDPLK 156          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A7S4IHM2_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IHM2_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 6.530e-8
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 0
Query:    3 GATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEIT 74
            G TA+VRIT+ +G  HEDVG    ++  +G+ + + KK AV+DA+KR LRLFG  LG+ + DK  LK  + T
Sbjct:   66 GVTAVVRITLKDGTSHEDVGYGTAENPKRGQAIEKAKKEAVSDARKRVLRLFGDALGNCLYDKSHLKRIKTT 137          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A2P6NIG4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NIG4_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 2.070e-7
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0
Query:    3 GATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQ 79
            G +A+VR+ + +G  HEDVG     +  KG  + + KK A++DA KRALRLFG +LG+ + DKE +K  +   K NQ
Sbjct:   93 GISAVVRVQLKDGSFHEDVGYGTADNMKKGLAIEKAKKEAISDALKRALRLFGNRLGNSVYDKEHMKANQAQQKANQ 169          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: C4M197_ENTHI (DNA repair and recombination protein RAD52, putative n=8 Tax=Entamoeba TaxID=5758 RepID=C4M197_ENTHI)

HSP 1 Score: 62.4 bits (150), Expect = 2.220e-7
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0
Query:    3 GATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQN 78
            G TA++R+T+ NG  HEDVG    +   KG  +   KK AV+D +KRALRLFG  LG+ + D + ++  +  HK N
Sbjct:   88 GVTAVIRVTLKNGVYHEDVGVGMSEMPKKGMAIELAKKEAVSDGRKRALRLFGNYLGNSLYDTDYVRTLDTNHKSN 163          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A6B2LG83_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LG83_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 3.020e-7
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 0
Query:    3 GATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLK 69
            G TA+V++++ +G  HEDVG    +++ KG  +   KK AV+DA+KRALR+FG  LG+ + DKE +K
Sbjct:   61 GVTAVVKVSLKDGTFHEDVGYGICENKSKGTAIENAKKEAVSDARKRALRVFGNALGNCVYDKEHIK 127          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A2P6NCY6_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCY6_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 3.520e-7
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 0
Query:    3 GATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKE 70
            G TAIV++ + +G  HEDVG    +D+ KG  + + KK AVTDA+KRALR+FG +LG+ + +K+ L E
Sbjct:   87 GVTAIVKVVLKDGAYHEDVGFGTGEDKRKGIAIEKAKKEAVTDARKRALRIFGNRLGNCLYNKQYLSE 154          
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: F0ZAM5_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZAM5_DICPU)

HSP 1 Score: 61.6 bits (148), Expect = 5.000e-7
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    3 GATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHK 76
            G TAIVR+T+ +G   EDVG     +  KG  +   KK AV+DA+KR LRLFG  LG+ + DKE  K+  IT K
Sbjct:   91 GVTAIVRVTLKDGTYQEDVGYGCSDNPSKGTAIENAKKEAVSDARKRTLRLFGDGLGNSLYDKEANKQLGITLK 164          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ89_9PHAE6.390e-13485.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGZ9_ECTSI7.150e-11777.57DNA repair protein RAD52 homolog n=1 Tax=Ectocarpu... [more]
A0A0A1UCM6_ENTIV2.130e-846.67DNA repair and recombination protein RAD52, putati... [more]
UPI000644DBF26.500e-848.53hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S4IHM2_9EUKA6.530e-847.22Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A2P6NIG4_9EUKA2.070e-744.16Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
C4M197_ENTHI2.220e-743.42DNA repair and recombination protein RAD52, putati... [more]
A0A6B2LG83_9EUKA3.020e-746.27Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A2P6NCY6_9EUKA3.520e-748.53Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
F0ZAM5_DICPU5.000e-748.65Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..107
NoneNo IPR availablePANTHERPTHR12132:SF1DNA REPAIR PROTEIN RAD52 HOMOLOGcoord: 2..175
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 3..88
IPR041247Rad52 familyPFAMPF04098Rad52_Rad22coord: 2..78
e-value: 3.2E-14
score: 53.1
IPR042525DNA repair protein Rad52/59/22 superfamilyGENE3D3.30.390.80coord: 1..74
e-value: 7.6E-17
score: 63.3
IPR007232DNA repair protein Rad52/59/22PANTHERPTHR12132DNA REPAIR AND RECOMBINATION PROTEIN RAD52, RAD59coord: 2..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11224contigEcto-sp13_S_contig11224:1080..3574 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11224.1087.1mRNA_Ecto-sp13_S_contig11224.1087.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11224 357..5496 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11224.1087.1 ID=prot_Ecto-sp13_S_contig11224.1087.1|Name=mRNA_Ecto-sp13_S_contig11224.1087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=440bp
MAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRA
LRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEQMQQQ
QQQQQQQSHHDQTGESPRSGVYPAGRPPPQQQQQQPQQQQQQNPRQKQQQ
QQQQQRSHIPNGRPHTPQPGQQRCPPLAGSGGGGSGGGAPPPRANIPQHS
PRGAPGNSGGDGGGGGGASSPRVVPQQIPPVPAGGGGPPTTAPGAAAAVA
GRGPLRESSPNKAAAFRNSGSGSGSGSSAGHRRLVDPVVDPGGGNGGGGG
APAMPSLRGSPAFDYAVGDGDGDGGTSRPAGEPPTTTAARGGGGGGGDGG
CGGEGDEYDMSQADFGSAFMEIDSLIQQHSTSSLSGGSAYETLAAGAGAA
ASGGGGDVGGAGGGLAMAVPMQQRQGQNNNNNNFKRLRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041247Rad52_fam
IPR042525Rad52_Rad59_Rad22_sf
IPR007232Rad52_Rad59_Rad22