mRNA_Ecto-sp13_S_contig11224.1087.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11224.1087.1
Unique NamemRNA_Ecto-sp13_S_contig11224.1087.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A6H5JZ89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ89_9PHAE)

HSP 1 Score: 426 bits (1094), Expect = 2.920e-133
Identity = 360/418 (86.12%), Postives = 362/418 (86.60%), Query Frame = 2 
Query:  656 LEKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXDQT-GESPRSGVYPAGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXXRANIPQHSPRGAPGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------AVAGRGPLRESSPNKAAAFRNS--GSGXXXXXSAG---HRRLVDPVVDPGGXXXXXXXAPAMPSLRGSPAFDYAVGDGDGDGGTSRPAGEPPTTTAARXXXXXXXDGGCGGEGDEYDMSQADFGSAFMEIDSLIQQHSTSSLSGGSAYETLAAG 1873
            LEKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQM DKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXX    G SPRSGVYPAGRPXXXXXXXXXXXXXXXXX           RSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXXRANIPQHSPR A GN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      AVAGRGPL ESSPN AAAFRNS  GSGXXXXXSAG   HRR VDPVVDPG     XXXAPAMPSL GSPA D AVGD  GDGGTSRP GE        XXXXXXX  GCGGEGDEYDMSQADFGSAFMEIDSLIQQH+TSSLSGGSA +TLAAG
Sbjct:    7 LEKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMTDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXXXXXGGSPRSGVYPAGRPXXXXXXXXXXXXXXXXX-----------RSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXXRANIPQHSPRVASGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAAVAGRGPLGESSPNNAAAFRNSAGGSGXXXXXSAGTAGHRRFVDPVVDPGRGNGGXXXAPAMPSLPGSPACDCAVGDRGGDGGTSRPPGEXXXXXXXXXXXXXXXXXGCGGEGDEYDMSQADFGSAFMEIDSLIQQHNTSSLSGGSADDTLAAG 413
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: D7FGZ9_ECTSI (DNA repair protein RAD52 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ9_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 1.480e-115
Identity = 340/436 (77.98%), Postives = 347/436 (79.59%), Query Frame = 2 
Query:  662 KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXDQTGESPRSGVYPAGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------RSHIPNGRPHTPQPGQQRCPPLAGSXXXXXXXXXXXX-RANIPQHSPRGAPGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----VAGRGPLRESSPNKAAAFRNSGSGXXXXX---------SAGHRRLVDPVVDPGGXXXXXXXAPAMPSLRGSPAFDYAVGDGDGDGGTSRPAGEPPTTTAARXXXXXXXDGGCGGEGDEYDMSQADFGSAFMEIDSLIQQHSTSSLSGGSAYETLAAG 1873
            KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKD+DKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  RSHIPNGRPHTPQPGQQ  PPLAGSXXXXXXXXXX   RANIPQHSPR A GN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          VAGRGPLRESSPNKAAAF N+  G   XX         ++GHRR VDP+VDPGG XXXXXX PAMPS  GSPAFDYAVGDG GD G SRP GEPPTTTAAR        G  GGEGDEYDMSQADFGSAFMEIDSLIQQH+TSSLSGGSA +TL AG
Sbjct:   92 KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDKDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSHIPNGRPHTPQPGQQ-APPLAGSXXXXXXXXXXPPPRANIPQHSPRVASGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMTAPGAAAVVAGRGPLRESSPNKAAAFENNAGGSGSXXXXXXXXXAGTSGHRRFVDPMVDPGGGXXXXXXTPAMPSFPGSPAFDYAVGDGCGDRGASRPPGEPPTTTAAR--------GREGGEGDEYDMSQADFGSAFMEIDSLIQQHNTSSLSGGSANDTLPAG 518
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: UPI000644DBF2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DBF2)

HSP 1 Score: 68.9 bits (167), Expect = 2.570e-9
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  683 WMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLK 892
            W AGA+AI+RI + +G  H+DVG    +D +KG  +   KK AV+DA+KR+LR+FG  LG+++ DK+ LK
Sbjct:   87 WRAGASAIIRIMLKDGTFHDDVGFGMREDSNKGTSIEHAKKEAVSDARKRSLRVFGNALGNKLYDKDPLK 156
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A0A1UCM6_ENTIV (DNA repair and recombination protein RAD52, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1UCM6_ENTIV)

HSP 1 Score: 68.9 bits (167), Expect = 5.940e-9
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 
Query:  641 NCNFLLEKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQ 916
            N N     +E G++   G TA+VR+T+ NG  HEDVG    +   KG  +   KK AV+DA+KRALRLFG  LG+ + D + +++ +  HKQ
Sbjct:   68 NLNVDYVDAEKGKY-KVGVTAVVRVTLKNGSYHEDVGVGMAEMPRKGAAIELAKKEAVSDARKRALRLFGNYLGNSLYDTDYVRQLDTNHKQ 158
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A7S4IHM2_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IHM2_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 8.620e-9
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:  662 KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEIT 907
            + E GRF   G TA+VRIT+ +G  HEDVG    ++  +G+ + + KK AV+DA+KR LRLFG  LG+ + DK  LK  + T
Sbjct:   57 EEERGRF-SVGVTAVVRITLKDGTSHEDVGYGTAENPKRGQAIEKAKKEAVSDARKRVLRLFGDALGNCLYDKSHLKRIKTT 137
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A2P6NIG4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NIG4_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 4.490e-8
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 2 
Query:  671 DGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQ 922
            +G+ +  G +A+VR+ + +G  HEDVG     +  KG  + + KK A++DA KRALRLFG +LG+ + DKE +K  +   K NQ
Sbjct:   86 EGQRFSCGISAVVRVQLKDGSFHEDVGYGTADNMKKGLAIEKAKKEAISDALKRALRLFGNRLGNSVYDKEHMKANQAQQKANQ 169
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: H3HDP1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDP1_PHYRM)

HSP 1 Score: 65.9 bits (159), Expect = 4.740e-8
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  662 KSEDGRFWMAGATAIVRITVANGCGHEDVG-NSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKE 895
            K + G  W    +++VRI + +G  HEDVG  S    RD G  L + KKA+V+DA+KRALRLFG  LG+   DKE +K+
Sbjct:  116 KEKKGDRWSVAYSSLVRIELKDGTSHEDVGFGSSDGQRDLGSALEQAKKASVSDARKRALRLFGEYLGNSCYDKEHIKD 194
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A2P6NCY6_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCY6_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 1.090e-7
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 2 
Query:  674 GRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKE 895
            G  +  G TAIV++ + +G  HEDVG    +D+ KG  + + KK AVTDA+KRALR+FG +LG+ + +K+ L E
Sbjct:   81 GEMFKIGVTAIVKVVLKDGAYHEDVGFGTGEDKRKGIAIEKAKKEAVTDARKRALRIFGNRLGNCLYNKQYLSE 154
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: C4M197_ENTHI (DNA repair and recombination protein RAD52, putative n=8 Tax=Entamoeba TaxID=5758 RepID=C4M197_ENTHI)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-7
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2 
Query:  668 EDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQN 919
            + G+F   G TA++R+T+ NG  HEDVG    +   KG  +   KK AV+D +KRALRLFG  LG+ + D + ++  +  HK N
Sbjct:   81 DKGKF-KVGVTAVIRVTLKNGVYHEDVGVGMSEMPKKGMAIELAKKEAVSDGRKRALRLFGNYLGNSLYDTDYVRTLDTNHKSN 163
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BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Match: A0A058Z6U4_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z6U4_FONAL)

HSP 1 Score: 67.0 bits (162), Expect = 2.050e-7
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:  647 NFLLEKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKD-RDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDK 880
            +FL E  E GRF   G +A++R+T+ NGC HEDVG     + R +G +L + KK A+TD  KRALR+FG  LG+ + DK
Sbjct:   89 DFLQEIGE-GRF-SCGVSALIRVTLKNGCFHEDVGYGSADNIRGRGAILEKCKKEAITDGIKRALRMFGNSLGNSLYDK 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11224.1087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ89_9PHAE2.920e-13386.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGZ9_ECTSI1.480e-11577.98DNA repair protein RAD52 homolog n=1 Tax=Ectocarpu... [more]
UPI000644DBF22.570e-948.57hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0A1UCM6_ENTIV5.940e-942.39DNA repair and recombination protein RAD52, putati... [more]
A0A7S4IHM2_9EUKA8.620e-946.34Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A2P6NIG4_9EUKA4.490e-841.67Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
H3HDP1_PHYRM4.740e-846.84Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2P6NCY6_9EUKA1.090e-745.95Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
C4M197_ENTHI1.500e-741.67DNA repair and recombination protein RAD52, putati... [more]
A0A058Z6U4_FONAL2.050e-748.10Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11224contigEcto-sp13_S_contig11224:357..5496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score364.4
Seed ortholog evalue7.5e-98
Seed eggNOG ortholog2880.D7FGZ9
Preferred nameRAD52
Model size3927
KEGG koko:K01288,ko:K10873
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000228,GO:0000278,GO:0000280,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000730,GO:0000733,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010520,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010792,GO:0010946,GO:0010947,GO:0010948,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032502,GO:0032505,GO:0032991,GO:0032993,GO:0033043,GO:0033260,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040020,GO:0042221,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045002,GO:0045003,GO:0045005,GO:0045027,GO:0045128,GO:0045165,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097617,GO:0110026,GO:0110027,GO:0110029,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1990426,GO:1990505,GO:1990814,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020
Exons5
EggNOG free text desc.double-strand break repair via single-strand annealing
EggNOG OGsCOG5055@1,KOG4141@2759
EC3.4.16.6
Cds size1320
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11224.1087.1prot_Ecto-sp13_S_contig11224.1087.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11224 1080..3574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.9293609-UTR-Ecto-sp13_S_contig11224:356..10111681462585.9293609-UTR-Ecto-sp13_S_contig11224:356..1011Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11224 357..1011 +
1681462585.9421606-UTR-Ecto-sp13_S_contig11224:1049..10791681462585.9421606-UTR-Ecto-sp13_S_contig11224:1049..1079Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11224 1050..1079 +
1681462585.9892435-UTR-Ecto-sp13_S_contig11224:3574..54961681462585.9892435-UTR-Ecto-sp13_S_contig11224:3574..5496Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11224 3575..5496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.9515517-CDS-Ecto-sp13_S_contig11224:1079..11991681462585.9515517-CDS-Ecto-sp13_S_contig11224:1079..1199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11224 1080..1199 +
1681462585.9614437-CDS-Ecto-sp13_S_contig11224:1470..15481681462585.9614437-CDS-Ecto-sp13_S_contig11224:1470..1548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11224 1471..1548 +
1681462585.970798-CDS-Ecto-sp13_S_contig11224:2100..29911681462585.970798-CDS-Ecto-sp13_S_contig11224:2100..2991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11224 2101..2991 +
1681462585.980382-CDS-Ecto-sp13_S_contig11224:3343..35741681462585.980382-CDS-Ecto-sp13_S_contig11224:3343..3574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11224 3344..3574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11224.1087.1

>prot_Ecto-sp13_S_contig11224.1087.1 ID=prot_Ecto-sp13_S_contig11224.1087.1|Name=mRNA_Ecto-sp13_S_contig11224.1087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=440bp
MAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRA
LRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREARMRKEQMQQQ
QQQQQQQSHHDQTGESPRSGVYPAGRPPPQQQQQQPQQQQQQNPRQKQQQ
QQQQQRSHIPNGRPHTPQPGQQRCPPLAGSGGGGSGGGAPPPRANIPQHS
PRGAPGNSGGDGGGGGGASSPRVVPQQIPPVPAGGGGPPTTAPGAAAAVA
GRGPLRESSPNKAAAFRNSGSGSGSGSSAGHRRLVDPVVDPGGGNGGGGG
APAMPSLRGSPAFDYAVGDGDGDGGTSRPAGEPPTTTAARGGGGGGGDGG
CGGEGDEYDMSQADFGSAFMEIDSLIQQHSTSSLSGGSAYETLAAGAGAA
ASGGGGDVGGAGGGLAMAVPMQQRQGQNNNNNNFKRLRT*
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mRNA from alignment at Ecto-sp13_S_contig11224:357..5496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11224.1087.1 ID=mRNA_Ecto-sp13_S_contig11224.1087.1|Name=mRNA_Ecto-sp13_S_contig11224.1087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5140bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11224:357..5496+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGATTGTTGTATGCGGTCTGTTTGTTGCTTTTCTCACAAGAAGAGGGAA
GGAAGTTGCGGTAACCTTCCCGCGTTAGGAGATGAAGGCAAGCACCGCAG
GGAGGAATCGTAGACAAATGCAAAACAGAACTTGAGGATTTACCTTCCCT
CTGTATGTAAGACCCCGGCTGGCTAGTCAAGCGTGCAATACCGAAAGTTG
TAGACTGACGCCCAGAGTAGACTGTAAGCGCAAACACACACGCACCTGGC
ATGTTCCCTGGCAGTCTTTCTGTTGGAAGGGCAGCTTTATTGCCTTGTCA
TTTTTTGTGACGATATAGTGATCGCTTATACCTTCATGCGCGGCTACCGT
TGTAGCTCAAGTTGGGTCATGCATATAGGCGATAAAGAAGGTGACTGCAG
GCAGAAGTGTTGATGCGTCCTATGCAAGAAAGAACGCGAAGGGAGACAAA
CAGGAAAGTAGCCAACAGCATCATCTGTGTTTATCGAGAGTTGACAACAG
CAGCTGCATGAAACAGCACCAGGAGCACCCAACGCCAAAATGCAACAACT
GCGAACAGAATCTTTTGTGTTTTTCGAGTTGACAACATCAACAACAGCTC
CATGAAATAGCAGCAGTAGCACCCAACGCCGTTATGCAACAACTGCAACT
TTTTAGCCACAACTCCGACGCTGACATGATGACAACACGCCAGCTCGAGA
AGAGCGAGGACGGCAGGTTCTGGATGGCGGGCGCGACAGCCATCGTGCGG
ATAACAGTGGCGAATGGCTGTGGCCACGAAGATGTCGGCAACTCGCACAT
GAAGGACAGGGACAAGGGAGAGGTCCTCAGCAGGGTGAAGAAGGTGCGGC
GGTGTTTCCCGAAAGGACGCCAGCATGCTCTATGCGTGTTGGCCCTTTTT
GCGTAGGGGTCCTGTTGAGGGGATGGATAAGAGGGCATGTCTTGCGCTCG
GTGCATATTGCGAGTCTTGCATGGTCTAATTGGAGGCCTTTGACTTGCTG
TTGTTCCTGCTGCTACTGCTGCTGACGATGATGATGATGATGATGATGCT
GATGCTGATGCTGTTGCTGCCGCTGCTGCCGCTGCTACTGCTGATGATGA
TGCTACCGCCACAGGCCGCGGTCACCGATGCGAAGAAGAGAGCGCTCAGG
CTCTTCGGCACCCAGCTGGGCTCGCAAATGATGGACAAAGAGGTGAACAA
CGATGACGCGCGCGGGTGGGTCTGCCAGCCTTCCGTAACCCTATTTTCAG
CGTGTTGATGAGACGACGGTCATTCACTACAGACGTGGCTCGCCACAGGC
CCGGTAGCGTTCCTCCCCGTTCTTCCCGTGACACATGTTTCATGAGCGGT
GGGTGTCGCTTCGTACGCCGCCCGCCCAACCGCTGATGCCCCGCGGAGAT
TGAACCAAGCGGTATTTTGTTCTGCGTGGCTTGCTGTCGTGCCTCCTGTG
CTGCGAAAAAAGCGTTTCCTTATCGCTGCCGCCATGGCCAAAAGTTGCGG
TTGTCTCCGCGCACGCATGTGTCGTGTTAGCGGGAGGGTTGATGGGTGCC
TGCAGGACACATGACGCTAGAGTGAGTCGTCAGTCAGAAACGAGCGTATG
AGTTTTGTTAGGATGATGTTTGTTTCATCTAGTTTTTGCCTTTTTTTTGC
GGTTTTGTCACAGGGCTTGAACGAGCGTATGAGTTTTGTTACGATGATGT
TTGTTTCATCTAGTTTTTGCCTTTTTTTTGCGGTTTTGTCACAGGGCTTG
AAGGAAACCGAGATCACCCACAAACAAAACCAGAGAGAGCTCAAGGCCAA
CCAGCAACGGGAGGCCAGAATGCGTAAGGAGCAGATGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGTCTCATCACGACCAGACGGGGGAGTCACCGCGG
TCGGGCGTTTACCCCGCCGGGCGACCGCCACCCCAACAGCAGCAACAGCA
ACCACAGCAGCAACAACAGCAGAACCCCAGGCAGAAGCAGCAGCAGCAGC
AGCAACAGCAGAGATCGCACATCCCGAACGGCCGGCCACACACACCGCAG
CCAGGACAGCAGCGCTGCCCCCCTCTCGCTGGAAGCGGTGGCGGTGGCAG
CGGTGGTGGTGCCCCACCCCCCCGAGCCAACATTCCACAACACTCGCCCC
GAGGAGCTCCTGGCAACAGCGGCGGTGACGGTGGCGGTGGCGGTGGCGCT
TCAAGCCCCCGCGTGGTTCCGCAGCAGATACCTCCAGTTCCGGCGGGCGG
AGGAGGTCCCCCGACGACAGCCCCGGGGGCGGCGGCGGCAGTGGCGGGGC
GAGGGCCGCTGCGCGAGTCGTCCCCGAACAAGGCGGCCGCCTTTCGAAAC
AGCGGCAGCGGCAGCGGCAGCGGCAGCAGCGCGGGGCACCGACGATTGGT
GGACCCCGTGGTGGACCCGGGAGGGGGAAACGGTGGAGGTGGGGGGGCGC
CGGCAATGCCATCGCTTCGCGGCAGCCCCGCGTTTGACTACGCGGTCGGG
GACGGGGATGGTGATGGAGGCACCAGCAGGCCTGCCGGAGAGCCACCGAC
AACGACAGCAGCAAGAGGAGGGGGAGGAGGAGGGGGTGACGGCGGATGCG
GAGGCGAGGGGGACGAATACGACATGTCGCAGGCGGTAAGGAGTCTTCAA
CGATATATATATACAGTATATATATATATGTTTTTCCTCGTTGATGAAAG
CGTTTCCCATATGTGTATGCGCTCGGATAAGTGCATGTCTGCGCTCTTGA
GGTTCCCTTGCCTAGCATGGTCTTTCGCCGAAAGCTCGCGTCAGAGTTTT
TATTTGTGCTTCTTCGTATGGTACGAGTCTTGTTATGATGAGAATCCTCA
TTGTTTGACAGCTCTCTCTCTCTCGGAACTTTTCGCTGTCGGCCCTATTC
CGGAACCATGGCATCACCCCCCCCCCCACTAACCACCGTCTCCTCCGCAC
GCCCCCTGATGCCTTGGCGCCGTCACGCCTCGAAAAGGACTTCGGTTCGG
CGTTCATGGAGATCGACTCCTTGATACAGCAACACAGCACGTCCTCCCTG
TCCGGGGGCAGCGCATACGAAACCCTTGCGGCGGGGGCAGGGGCGGCGGC
TAGTGGGGGTGGTGGTGATGTTGGCGGTGCGGGTGGTGGTCTGGCGATGG
CAGTACCCATGCAGCAAAGGCAGGGCCAAAACAACAACAACAACAACTTC
AAGCGATTACGAACCTAGGCGAGGCCGATGAATGTACAGGGGTGTCCTGA
ATGGGTGGTTGGATGGGTCGGGCACCGTGGCAAGGTCGAACTCCACGCTT
ACCAGAAAGTTGGATGATGTCATCGTTTGGTCGATTGTGGGGAGTGACGT
CGAAGATGAAAGGCGAGCAGTAAAATAGTGTCTTGTTGATGTGTATATGT
TGTGTTGTGTGCGTATTTTTACGCCGTTCCTTTCGGAGTAAGTGTGCTGG
AGTGGTTGATGTGGTGCGGTGAGTCTTTATGGCGGTCGCTAGTCCCGAAT
ACAGCAGGGTTATCGACAATAACCACTCTCGGTGCTGCTTCCCTTGCTTT
CTGGGTGGTGCTGTCTTGGAGGTGGGCATGTGTTTACCCTACAGCGAAAG
TCGTCGTGGTTCGGCAGACACAGAAGCAGGGGGGATAGGCACAGCAATCG
GTGGATTGACGAAATTATTGGTGTCATGTCGGCGACAATTGACCGGGGCG
TGGCGGCCGACCTTGCAAGGCGTTACGAGAGGCGGGCCGGATGTTTCTAT
GCATCGGTGAAGAACACGCGATGATGGATTCAGTCAGACTTGCGCGTAGC
AGTCAGCCGATAGTAGCAGCATCTATTGCAGCAACGTCGCCTTGCGCATT
GACGTCGCCACGGGGAAGTTGCGGTTTCGTTTGACGAGACGGGCTGTACG
GTACAAATCTAGCACTAGGATCCTGTCGGGGCCACTGACACACTGACCAC
CCCGTCCGATTCTGGCGGCGGAGGGCGGGCAAGGTACGTGGCACTTGGTG
TGCCTGCCCGAGGGGTGACTAGGCGGCGGCTTGCCGGAGTTGATGAATGT
GGAGGCTTTCGTAGTGCTTGGTGGGCCGTGTCCCCCGTCTTTTTCTGCTC
TATCCGATGTAGGGTTTGTCGTAGAATGGGTGGCAGGCGATGACATGGCA
TAACATCGCATGGCAAGAAGGAACAAGAAGCTGGCATGAATGCTGCTATT
ATTACTGCTTTGGTTAGCGACGTGGAACGGGCTTGGATTTATAGCTTGCT
GAGATTTTCTCCCTAGAAGAGCACCGCTTCCATTCGCGTCCTGTTCCGGC
TTGTTAGCTTTGAGCGATCGCTATTTGCTGTTTGAGTTCTTTCGAAGACC
CATGCGGTGTCGACCAAGTCAAACCGCTTCAAAGCTGGTGATAGACGACA
GGTCTCGAGAGTTCGTGTTTTTGTTTGTAGGGGAGGTTGGATGGTCTGCT
ACGGAGTTACAGTCTTCGTTGCTACAGCCTATCAGGGGAAACGGTCAGTG
TGTTACCGCTTTGACTTTTCACGCGAGCGCGCGCGTTGCGAGGGTGGCGT
TTTGAGCGTGACAGCATTTACGTAGCTGTTTTGTAGGCACAACGCTACAC
ATGTGCTTGTGCTCACACAGGACGATCGCTTGGAAACTGGACTCCTTACT
AAGTAGACTGCCTGCATTTCACCATCATTGTAATTGCGTTGGACCCTGTC
TTGTATTGTTGTGTCGTGATAGAACCTCCATGTGATGCCAGGTCCATTTG
TACTCATACTGCTGTAATACTTTGGTGTTCTGTGGGAGTTGGTGCCAGAC
ATTGATGGAGGGGTGGAGGAGGGGGCGATGGGTGGAGGCCGCGTGATTCG
TTGACGCAGTGTCGAGGCATCGGGGGCGAGTGGTGATTGATTGTGCTCGT
TTTTTCTTTCGCGTTCACAAAAAATACGAAATGTGAAACTTTTACCGCGT
TCATTTCTTGTCGATAACCCCCAGACCCGAGACACAACCTTGTCGTTGTT
GCGAGTCAGTCGAAACGCATGCCAACGCACTCTTGTCCAAATGTAGGTGT
CGGTGAGCACTGCGAGAATACCTTCTCCTGAACTGCCTCTATTTGTGATG
GATTGGCGTCGACCGCGTAGCAGTGCTGTCTGTAGGGAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11224:357..5496+

>mRNA_Ecto-sp13_S_contig11224.1087.1 ID=mRNA_Ecto-sp13_S_contig11224.1087.1|Name=mRNA_Ecto-sp13_S_contig11224.1087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11224:357..5496+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGGCGCGACAGCCATCGTGCGGATAACAGTGGCGAATGGCTGTGG
CCACGAAGATGTCGGCAACTCGCACATGAAGGACAGGGACAAGGGAGAGG
TCCTCAGCAGGGTGAAGAAGGCCGCGGTCACCGATGCGAAGAAGAGAGCG
CTCAGGCTCTTCGGCACCCAGCTGGGCTCGCAAATGATGGACAAAGAGGG
CTTGAAGGAAACCGAGATCACCCACAAACAAAACCAGAGAGAGCTCAAGG
CCAACCAGCAACGGGAGGCCAGAATGCGTAAGGAGCAGATGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGTCTCATCACGACCAGACGGGGGAGTCACC
GCGGTCGGGCGTTTACCCCGCCGGGCGACCGCCACCCCAACAGCAGCAAC
AGCAACCACAGCAGCAACAACAGCAGAACCCCAGGCAGAAGCAGCAGCAG
CAGCAGCAACAGCAGAGATCGCACATCCCGAACGGCCGGCCACACACACC
GCAGCCAGGACAGCAGCGCTGCCCCCCTCTCGCTGGAAGCGGTGGCGGTG
GCAGCGGTGGTGGTGCCCCACCCCCCCGAGCCAACATTCCACAACACTCG
CCCCGAGGAGCTCCTGGCAACAGCGGCGGTGACGGTGGCGGTGGCGGTGG
CGCTTCAAGCCCCCGCGTGGTTCCGCAGCAGATACCTCCAGTTCCGGCGG
GCGGAGGAGGTCCCCCGACGACAGCCCCGGGGGCGGCGGCGGCAGTGGCG
GGGCGAGGGCCGCTGCGCGAGTCGTCCCCGAACAAGGCGGCCGCCTTTCG
AAACAGCGGCAGCGGCAGCGGCAGCGGCAGCAGCGCGGGGCACCGACGAT
TGGTGGACCCCGTGGTGGACCCGGGAGGGGGAAACGGTGGAGGTGGGGGG
GCGCCGGCAATGCCATCGCTTCGCGGCAGCCCCGCGTTTGACTACGCGGT
CGGGGACGGGGATGGTGATGGAGGCACCAGCAGGCCTGCCGGAGAGCCAC
CGACAACGACAGCAGCAAGAGGAGGGGGAGGAGGAGGGGGTGACGGCGGA
TGCGGAGGCGAGGGGGACGAATACGACATGTCGCAGGCGGACTTCGGTTC
GGCGTTCATGGAGATCGACTCCTTGATACAGCAACACAGCACGTCCTCCC
TGTCCGGGGGCAGCGCATACGAAACCCTTGCGGCGGGGGCAGGGGCGGCG
GCTAGTGGGGGTGGTGGTGATGTTGGCGGTGCGGGTGGTGGTCTGGCGAT
GGCAGTACCCATGCAGCAAAGGCAGGGCCAAAACAACAACAACAACAACT
TCAAGCGATTACGAACCTAG
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