mRNA_Ecto-sp13_S_contig11221.1083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11221.1083.1
Unique NamemRNA_Ecto-sp13_S_contig11221.1083.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 3.330e-56
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1
Query:    1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGVNEEPSSPRTPKK 291
            VIGLGTAG TYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGE+RYARNDLKDWLDAHGVNEEPSSPRTPKK
Sbjct:  593 VIGLGTAGVTYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHGVNEEPSSPRTPKK 689          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 6.130e-56
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 1
Query:    1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGVNEEPSSPRTPKK 291
            VIGLGTAGATYVFLQ FMK+DLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGE+RYARNDLKDWLDAHGVNEEPSSPRTPKK
Sbjct:  537 VIGLGTAGATYVFLQNFMKDDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHGVNEEPSSPRTPKK 633          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.820e-21
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGV 255
            VI L T  ATY+ L   +  +L+S +GP  F GV+AY VAS FA L  MTT TILQCFIADEEM+   ERYA NDLKD+++ HG 
Sbjct:  528 VICLATMAATYLGLDATIGNELHSFVGPTIFVGVLAYLVASVFAELFSMTTATILQCFIADEEMYSPAERYADNDLKDFVNTHGA 612          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S2UZM6_9STRA (Choline transporter-like protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZM6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.640e-17
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   10 LGTAGAT-YVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHG 252
            +G +GA  Y  +  +++E+L S + P  F  V+A+Y+++ FA + GM  LTILQCFIADEEMF+  + YA  DLKD++D  G
Sbjct:   72 VGVSGAVAYFVMDSYLEEELNSLIVPTIFVMVLAWYISTKFAEIFGMAILTILQCFIADEEMFDPSQMYAHGDLKDYIDTFG 153          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S2HA85_9STRA (Choline transporter-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HA85_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.620e-14
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAH 249
            T    Y+ + + +  +L S +GPV    +MAY VA+ F ++  M   TILQCFIADEEMF+G+E YA  DL++W+D +
Sbjct:  594 TGACAYILIDQQIGHELDSVVGPVILVVLMAYSVAAMFMSVFDMGIATILQCFIADEEMFDGDEMYAEGDLREWIDKY 671          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: D7FRZ5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.520e-13
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGV-NEEPSSPR 279
            T    YV +   ++  L S +GP     V+AYY       + GM   TILQCF+ADEE+F   +++A NDL+ W+D HG   E  S PR
Sbjct:  393 TTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMAITTILQCFVADEELFPPSQQFAENDLRGWVDKHGAPTEVDSGPR 481          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.740e-13
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGV 255
            T    YV +   ++  L S +GP     V+AYY       + GM   TILQCF+ADEE+F   +++A NDL+ W+D HG 
Sbjct:  512 TTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMAITTILQCFVADEELFPPTQQFAENDLRGWVDKHGA 591          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A6U0JXB5_9STRA (Choline transporter-like protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JXB5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.310e-12
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGVNEE 264
            T G  YV +++   + LYSP+GPVFF G+++++++    A+  M + TIL CF+ADEE+  G   YA + L  ++D +G  E+
Sbjct:   37 TCGVGYVVIEETYGDQLYSPVGPVFFIGLISFFISGMCMAVFDMCSKTILHCFVADEELGTG---YADSKLSAYVDKYGSEED 116          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S0C3F8_9STRA (Choline transporter-like protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3F8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.530e-12
Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAH 249
            ++ + T G+ YV + ++++EDL S  GP+    +MA++++  F  +  M   TIL CFIADEEMF G++ +A+  LKDW+D +
Sbjct:  309 IVSVITFGS-YVLMNEYIEEDLNSVYGPLLVIFLMAWFISDMFMDVFQMGISTILHCFIADEEMFSGDQCFAQGQLKDWIDQY 390          
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S1VN07_9STRA (Choline transporter-like protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VN07_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.200e-12
Identity = 29/72 (40.28%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   28 TYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLD 243
            +Y  + +++ E+LYS  GPV    +++Y+++  F  +  M   TILQCF+ADEEMF+G+  YA  +L+ W+D
Sbjct:  596 SYFVIVEYVGEELYSVAGPVVVVFIISYFISDMFMDIFDMGISTILQCFVADEEMFDGDTCYAEGELQKWID 667          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L007_9PHAE3.330e-5697.94Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D8LIJ7_ECTSI6.130e-5696.91Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z6J7_9STRA3.820e-2157.65Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A7S2UZM6_9STRA1.640e-1746.34Choline transporter-like protein n=2 Tax=Fibrocaps... [more]
A0A7S2HA85_9STRA1.620e-1444.87Choline transporter-like protein n=1 Tax=Helicothe... [more]
D7FRZ5_ECTSI3.520e-1340.45Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5JW76_9PHAE6.740e-1340.00Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6U0JXB5_9STRA1.310e-1238.55Choline transporter-like protein n=1 Tax=Minutocel... [more]
A0A7S0C3F8_9STRA1.530e-1239.76Choline transporter-like protein n=1 Tax=Proboscia... [more]
A0A7S1VN07_9STRA8.200e-1240.28Choline transporter-like protein n=2 Tax=Grammatop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11221contigEcto-sp13_S_contig11221:876..1502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score192.6
Seed ortholog evalue8.7e-47
Seed eggNOG ortholog2880.D8LIJ7
Model size294
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
Cds size291
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.657063-CDS-Ecto-sp13_S_contig11221:875..10221681462585.657063-CDS-Ecto-sp13_S_contig11221:875..1022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11221 876..1022 +
1681462585.6702993-CDS-Ecto-sp13_S_contig11221:1356..15001681462585.6702993-CDS-Ecto-sp13_S_contig11221:1356..1500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11221 1357..1500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11221.1083.1prot_Ecto-sp13_S_contig11221.1083.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11221 876..1500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11221.1083.1

>prot_Ecto-sp13_S_contig11221.1083.1 ID=prot_Ecto-sp13_S_contig11221.1083.1|Name=mRNA_Ecto-sp13_S_contig11221.1083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMT
TLTILQCFIADEEMFEGEERYARNDLKDWLDAHGVNEEPSSPRTPKK
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mRNA from alignment at Ecto-sp13_S_contig11221:876..1502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11221.1083.1 ID=mRNA_Ecto-sp13_S_contig11221.1083.1|Name=mRNA_Ecto-sp13_S_contig11221.1083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11221:876..1502+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATCGGTCTCGGGACGGCGGGCGCTACTTATGTGTTCCTGCAAAAATT CATGAAGGAAGATCTGTACAGCCCCATGGGCCCTGTCTTCTTCGCCGGGG TCATGGCGTACTACGTCGCCTCCTCGTTCGCCGCTCTGCTTGGGATGGTA TGTTGTTGTTTGTCGTTTGTACGTAGCGGTACTTGTTTACACGGTCGACT TTCTAATTCTTCGTCTTCTTTCTGTCTTCACGTCATTGACCACTCTGCTA TGCAACAAGAGCTTTGGTAATTCACATCTTCGCGGGTTCAAGCTGTCATC ATTGATGGTCCTTCAGTGAGTTCTTTCTGACGAGGGTGCGGAGCAGCCAC ACACACCAAACACAAACGACAAGTTTTCGAATGAACCACACCGCGGGGTT TCCGTTACAAAGCTACTCCCCCTCCATCTCGGCCTCCGTTCTTCTAACAC TCGCACCATGTTTTCTTGTGCCAAACAACAGACGACGCTCACGATCCTCC AGTGCTTCATCGCTGACGAGGAGATGTTCGAGGGCGAGGAGCGGTACGCC CGCAACGACCTCAAGGATTGGCTTGATGCTCACGGGGTGAACGAGGAACC CTCTTCACCGCGCACGCCCAAGAAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11221:876..1502+

>mRNA_Ecto-sp13_S_contig11221.1083.1 ID=mRNA_Ecto-sp13_S_contig11221.1083.1|Name=mRNA_Ecto-sp13_S_contig11221.1083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11221:876..1502+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGATCGGTCTCGGGACGGCGGGCGCTACTTATGTGTTCCTGCAAAAATT
CATGAAGGAAGATCTGTACAGCCCCATGGGCCCTGTCTTCTTCGCCGGGG
TCATGGCGTACTACGTCGCCTCCTCGTTCGCCGCTCTGCTTGGGATGACG
ACGCTCACGATCCTCCAGTGCTTCATCGCTGACGAGGAGATGTTCGAGGG
CGAGGAGCGGTACGCCCGCAACGACCTCAAGGATTGGCTTGATGCTCACG
GGGTGAACGAGGAACCCTCTTCACCGCGCACGCCCAAGAAG
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