mRNA_Ecto-sp13_S_contig11221.1083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE) HSP 1 Score: 193 bits (491), Expect = 3.330e-56 Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1
Query: 1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGVNEEPSSPRTPKK 291
VIGLGTAG TYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGE+RYARNDLKDWLDAHGVNEEPSSPRTPKK
Sbjct: 593 VIGLGTAGVTYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHGVNEEPSSPRTPKK 689
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI) HSP 1 Score: 192 bits (487), Expect = 6.130e-56 Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 1
Query: 1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGVNEEPSSPRTPKK 291
VIGLGTAGATYVFLQ FMK+DLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGE+RYARNDLKDWLDAHGVNEEPSSPRTPKK
Sbjct: 537 VIGLGTAGATYVFLQNFMKDDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHGVNEEPSSPRTPKK 633
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 3.820e-21 Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGV 255
VI L T ATY+ L + +L+S +GP F GV+AY VAS FA L MTT TILQCFIADEEM+ ERYA NDLKD+++ HG
Sbjct: 528 VICLATMAATYLGLDATIGNELHSFVGPTIFVGVLAYLVASVFAELFSMTTATILQCFIADEEMYSPAERYADNDLKDFVNTHGA 612
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S2UZM6_9STRA (Choline transporter-like protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZM6_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.640e-17 Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 10 LGTAGAT-YVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHG 252
+G +GA Y + +++E+L S + P F V+A+Y+++ FA + GM LTILQCFIADEEMF+ + YA DLKD++D G
Sbjct: 72 VGVSGAVAYFVMDSYLEEELNSLIVPTIFVMVLAWYISTKFAEIFGMAILTILQCFIADEEMFDPSQMYAHGDLKDYIDTFG 153
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S2HA85_9STRA (Choline transporter-like protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HA85_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.620e-14 Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAH 249
T Y+ + + + +L S +GPV +MAY VA+ F ++ M TILQCFIADEEMF+G+E YA DL++W+D +
Sbjct: 594 TGACAYILIDQQIGHELDSVVGPVILVVLMAYSVAAMFMSVFDMGIATILQCFIADEEMFDGDEMYAEGDLREWIDKY 671
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: D7FRZ5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ5_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 3.520e-13 Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGV-NEEPSSPR 279
T YV + ++ L S +GP V+AYY + GM TILQCF+ADEE+F +++A NDL+ W+D HG E S PR
Sbjct: 393 TTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMAITTILQCFVADEELFPPSQQFAENDLRGWVDKHGAPTEVDSGPR 481
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.740e-13 Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGV 255
T YV + ++ L S +GP V+AYY + GM TILQCF+ADEE+F +++A NDL+ W+D HG
Sbjct: 512 TTLGVYVAMDSNIRSQLNSLVGPTIMTAVLAYYTGKMVTGVYGMAITTILQCFVADEELFPPTQQFAENDLRGWVDKHGA 591
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A6U0JXB5_9STRA (Choline transporter-like protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JXB5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.310e-12 Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 16 TAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAHGVNEE 264
T G YV +++ + LYSP+GPVFF G+++++++ A+ M + TIL CF+ADEE+ G YA + L ++D +G E+
Sbjct: 37 TCGVGYVVIEETYGDQLYSPVGPVFFIGLISFFISGMCMAVFDMCSKTILHCFVADEELGTG---YADSKLSAYVDKYGSEED 116
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S0C3F8_9STRA (Choline transporter-like protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3F8_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.530e-12 Identity = 33/83 (39.76%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLDAH 249
++ + T G+ YV + ++++EDL S GP+ +MA++++ F + M TIL CFIADEEMF G++ +A+ LKDW+D +
Sbjct: 309 IVSVITFGS-YVLMNEYIEEDLNSVYGPLLVIFLMAWFISDMFMDVFQMGISTILHCFIADEEMFSGDQCFAQGQLKDWIDQY 390
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Match: A0A7S1VN07_9STRA (Choline transporter-like protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VN07_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 8.200e-12 Identity = 29/72 (40.28%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 28 TYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEERYARNDLKDWLD 243
+Y + +++ E+LYS GPV +++Y+++ F + M TILQCF+ADEEMF+G+ YA +L+ W+D
Sbjct: 596 SYFVIVEYVGEELYSVAGPVVVVFIISYFISDMFMDIFDMGISTILQCFVADEEMFDGDTCYAEGELQKWID 667 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11221.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11221.1083.1 >prot_Ecto-sp13_S_contig11221.1083.1 ID=prot_Ecto-sp13_S_contig11221.1083.1|Name=mRNA_Ecto-sp13_S_contig11221.1083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp VIGLGTAGATYVFLQKFMKEDLYSPMGPVFFAGVMAYYVASSFAALLGMTback to top mRNA from alignment at Ecto-sp13_S_contig11221:876..1502+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11221.1083.1 ID=mRNA_Ecto-sp13_S_contig11221.1083.1|Name=mRNA_Ecto-sp13_S_contig11221.1083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11221:876..1502+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11221:876..1502+ >mRNA_Ecto-sp13_S_contig11221.1083.1 ID=mRNA_Ecto-sp13_S_contig11221.1083.1|Name=mRNA_Ecto-sp13_S_contig11221.1083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11221:876..1502+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |