mRNA_Ecto-sp13_S_contig1122.1081.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1122.1081.1 vs. uniprot
Match: D7FWC6_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC6_ECTSI) HSP 1 Score: 1703 bits (4411), Expect = 0.000e+0 Identity = 974/1239 (78.61%), Postives = 1009/1239 (81.44%), Query Frame = 1
Query: 1 MCENDTITEGRRGTCLTELTRHRSSVCDAALDTEVGAAVVVPDPQSGLAAKCAREASSEKTAAHKRLLAESLIVFFDKRSSSRQLATQVMVRLVGRLAVVQGADDIIAVVEKLHVLHASRSGINAIITDLDPKIPKLMEFLRLRSLRPGLGKLPVVSVIVVVDPDDLRPELLASAMESGVDAVIRRPLERSSFTSCVGEVLRRHASVEFVYKDVVGEVETFNYPRFLLEGFHFLAVGETSSVGDGVREGDSTFNEIAGDAVRTYTKEASTGSGNGSVTTIGTGGWAQDGIVSPNGENAGQSDPGSGLLRSRSIVGVVSSIEQSASSAXXXXXXXXXXXXXXXVGASTTGTDAMGFGSAARKSSRQAATARMMGKTKVLTTMRGGHVKITSSSLRPRLYLYPGDKGYVGSGGSTMNANIDSRNEGKRSSTGCSNGGVGGSGDINGAGGDRDRQNQGGTEVDRRMESERQVSNELAPFVKRRPPVLGDLATSSGLRKERLATTMRLVENTFAFTKGQKANTAWQTKGRTAAAATSPLLRASVPTPGSFATPAGHGPNTITPSAKSRPRAPRNARIGLGFPPGVGATSPGGALPQNRRRPPKATRTAAGPAAEGSWKAATVRAPRPDDGNPVSQKKIFNATGTQGRRAATRAGMFDEVLRSDQTNANPTEMATTGNLRSALGVVMTGETAARVVIARMIRNRKVRMAKTAMSKGGEDGSCGAAAGACAIGPISKGAGRGGQTGGRNKAASRERGGRGGSAEVLKRKLAKGVSTSAGGVSGGLLGEGIFKTVLSSMAKKRLREGLHEIKSNPLDLLRRGFVEVEPAKHGSTALGCHLIKGWEEQKNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMEPFDALKDFSAAISFKLDETHRAALQQSGASNTKRPSNRVTASGNAAGVSTFGRDSGGARTAKGEGASGESNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVAGDTRNITYRSNRALILRRVGDFRGAQQDYSRIRALQMLEQTAADRNATQETIRRPSTPAVKDGLHTGSNTLIGSPTTTGAXXXXXXXXXATGAPEEKEGATRPRAVKGHGKGISSSGGGLVPDGSAAVHARAKSVPSAGARATTVAVAEPGVGTVEKPSAGRRKHVQRCTSSPLSEKTSLGDVGIGDVILTPGKSLLLEENDTPTNPGHG-RRIEEHEGTAEDGRSVAAAADGPATSITRTGTAPMTAGYSLPRGRQG 3714
MCENDTITEGRRGTCLTELTRH+SSVCDA LD EVGAA V PDPQ GLAAKCARE SSE TAAHKRLLAESLIVF DKRSSSRQLATQ+MVRLVGRLAVVQGADDIIAVVEKLHV HASRSG+NAIITDLDPKIPKLME LRLRSLRPGLGKLP+VSVIVVVDPDDLRPELLASA+ESGVDAVIRRPLERSSFTSCVGEVLR+HASVEFVYKDVVGEVETFNYPRFLLEGFHFL VGET SVG GV EGDSTFNEIAGDAVRTYTKEASTGSGNGSVTT+GTGGWAQDGIVSPNG NAGQS+ XXXX ASTT TDA GFGSAARKSSRQAATARMMGKTKVLTTMRGGHVKITS SLRPRLYLY GDKGYVG GGSTMNAN DSR+ GKRSS GCSNGGVGGS GDRDRQNQGGTEVDRR+ESERQ AWQ+KGRTAAA TS LR SVPTPGSF T AGH P A S RA RNARIG GFPPGVG PG ALPQNR RPPK T TA GPAAEGSW+AATVRAPRPD+GNPVSQKKIFNATGTQGRRAATRAGMFDEVLR DQTNANPTEMA+TGNLRSALGVV+TGE AAR+VI RMI+NRK RMAKTAMS GGEDGS GA GACA GPISK A RGG TGGR+ AA R+RGGRGGSA LKRK KGVSTSAGGVSGGLLGEGIFKTVLSSMAKKRLREGL EIKSNPLDLLRRGFVEVEP KHGSTALGCHLIKGWEEQ NGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLME FDALKDFSAAISFKLDETHRAALQQ GASNTKRPSN VTASG+A +SNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVA DTRNITYRSNRALILRRVGDFRGAQQDYSRIRALQ+LEQTAADR+ATQETI RP+TPAVKDG HTGS L GSPTT GA ATGAPEEK GATRP AVK HGKGISS GGGLVPDGSAAVHARA+S+PSAGAR TT VAEPGVGTVEKP+AG R+HVQRC SSPL E+TS G+VG+G VI TPGKSLLLEEN TP +PGHG R IEEH+GTA+DG S AAAADGPATS TRTGTA MT GYSLP+GRQG
Sbjct: 1 MCENDTITEGRRGTCLTELTRHKSSVCDAGLDNEVGAAAVAPDPQRGLAAKCAREDSSENTAAHKRLLAESLIVFHDKRSSSRQLATQIMVRLVGRLAVVQGADDIIAVVEKLHVPHASRSGVNAIITDLDPKIPKLMESLRLRSLRPGLGKLPIVSVIVVVDPDDLRPELLASAIESGVDAVIRRPLERSSFTSCVGEVLRKHASVEFVYKDVVGEVETFNYPRFLLEGFHFLGVGETGSVGGGVGEGDSTFNEIAGDAVRTYTKEASTGSGNGSVTTVGTGGWAQDGIVSPNGGNAGQSEA------------------------------PLPTPXXXXXXASTTATDATGFGSAARKSSRQAATARMMGKTKVLTTMRGGHVKITSPSLRPRLYLYTGDKGYVGGGGSTMNANTDSRDGGKRSSAGCSNGGVGGSXXXXXXXGDRDRQNQGGTEVDRRVESERQ---------------------------------------------------AWQSKGRTAAAGTSSSLRPSVPTPGSFTTSAGHAPTAAGHGAGSGLRAQRNARIGPGFPPGVGIIPPGRALPQNRTRPPKTTGTAVGPAAEGSWRAATVRAPRPDEGNPVSQKKIFNATGTQGRRAATRAGMFDEVLRRDQTNANPTEMASTGNLRSALGVVVTGEAAARLVIGRMIQNRKARMAKTAMSNGGEDGSRGA--GACAYGPISKRAPRGGLTGGRSMAAGRDRGGRGGSAGALKRKPVKGVSTSAGGVSGGLLGEGIFKTVLSSMAKKRLREGLQEIKSNPLDLLRRGFVEVEPTKHGSTALGCHLIKGWEEQTNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMELFDALKDFSAAISFKLDETHRAALQQRGASNTKRPSNGVTASGSAGXXXXXXXXXXXXXXXXXXXXXXKSNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVARDTRNITYRSNRALILRRVGDFRGAQQDYSRIRALQILEQTAADRSATQETISRPATPAVKDGPHTGSIALNGSPTTAGAAGAAE----ATGAPEEKGGATRPWAVKSHGKGISSGGGGLVPDGSAAVHARARSLPSAGARTTTAVVAEPGVGTVEKPTAGHREHVQRCASSPLLERTSHGNVGVGAVIPTPGKSLLLEENKTPASPGHGGRSIEEHKGTAQDGGSAAAAADGPATSSTRTGTATMTTGYSLPKGRQG 1152
BLAST of mRNA_Ecto-sp13_S_contig1122.1081.1 vs. uniprot
Match: A0A6H5K1M1_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1M1_9PHAE) HSP 1 Score: 1282 bits (3317), Expect = 0.000e+0 Identity = 770/1041 (73.97%), Postives = 805/1041 (77.33%), Query Frame = 1
Query: 1123 TKVLTTMRGGHVKITSSSLRPRLYLYPGDKGYVGSGGSTMNANIDSRNEGKRSSTGCSNGGVGGSGDINGAGGDRDRQNQGGTEVDRRMESERQVSNELAPFVKRRPPVLGDLATSSGLRKERLATTMRLVENTFAFTKGQKANTAWQTKGRTAAAATSPLLRASVPTPGSFATPAGHGPNTITPSAKSRPRAP-----RNARIGLGFPPGVGATSPGGALPQNRRRPPKATRTAAGPAAEGSWKAATVRAPRPDDGNPVSQKKIFNATGTQGRRAATRAGMFDEVLRSDQTNANPTEMATTGNLRSALGVVMTGETAARVVIARMIRNRKVRMAKTAMSKGGEDGSCGAAAGACAIGPISKGAGRGGQTGGRNKAASRERGGRGGSAEVLKRKLAKGVSTSAGGVSGGLLGEGIFKTVLSSMAKKRLREGLHEIKSNPLDLLRRGFVEVEPAKHGSTALGCHLIKGWEEQKNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMEPFDALKDFSAAISFKLDETHRAALQQSGASNTKRPSNRVTASGNAAGVSTFGRDSGGARTAKGEGASGESNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVAGDTRNITYRSNRALILRRVGDFRGAQQDYSRIRALQMLEQTAADRNATQETIRRPSTPAVKDGLHTGSNTLIGSPTTTGAXXXXXXXXX-------ATGAPEEKEGATRPRAVKGHGKGISSSGGGLVPDGSAAVHARAKSVPSAGARATTVAVAEPGVGTVEKPSAGRRKHVQRCTSSPLSEKTSLGDVGIGDVILTPGKSLLLEENDTPTNPGHGRRIEEHEGTAEDGRSVAAAADGPATSITRTGTAPMTAGYSLPRGRQGDTHTGCGDDRAADSNNDSSASPATXXXXXTSAAXXXXXXXXXXTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTRTTAGYKSIDAGHSSCSSEHWSDLFRDKRLMEDNFRRRALLRELYLSPAERGEARGNRYPDEDGRGGAESEKRNSGSYGRLRKTSGKG 4209
TKVLTTMRGGHVKITS SLRPRLYLYPGDKGYVG GGS MNAN DS + G+RSSTGCSNGGVGGS GDRDR+NQ GTE+DRR+ESERQ AWQ+KGR AA TS L R S+PTPGSF TPAGHGP+T PSA RNARI LGFPPGVG T PGG + +NR RPPK T TAAGPAAEGSWKAATVRAPRPD+GNP+ QKKIFNATGTQGRRAATRAGMFDEVLRSDQTN NPTE ATTGNLRSALGVV+TGE AAR VI RMIRNRK +MAKTAMSKGGED S G GACA GPISKGA RGG+TGGR+K A +R GRGGSA VLK K AKGVS SAGGVSGGLLGEGIFKTVLSSMAKKRLREGLHEIKSNPLDLLRRGF EVEPAKHGSTALGCHLIKGWEEQKNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLME FDALKDFSAAISFKLDETHRAAL+QSGASNTKRPSN VTASGNAAGV T GRD G ART +G G SGESNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVA DTRNIT GAQQDYSRIRALQMLEQTA DRNA QETI RPSTPAVKDG HTGS L GSPTT XXXXXXXXX ATGAPEEK GA RPRAVK HGKGISSSGGGLV DG AA+HARAKS+PS GAR+TTV VAEPGVG EKP AG +HV+RCTSSPL EKT LG+VG+G VI PGKSLLLEEN TP +PGHG+R+ EHEGTA+DG SVAAAADGPAT ITRTG A TAGYSLP+GRQGDTHTGCG+DRA DSN D A PA XXXXX XXXXXXXXXX TTRTTAG KSIDAG SSCSSEHWSDLFRDKRLMEDNFRRRALLREL+LSP + GE R NRYPDEDGRGGAESEKRNSG RLRKT+GKG
Sbjct: 5 TKVLTTMRGGHVKITSPSLRPRLYLYPGDKGYVGGGGSAMNANTDSHDRGERSSTGCSNGGVGGSXXXXXXXGDRDRRNQSGTELDRRVESERQ---------------------------------------------------AWQSKGRRVAADTSSLFRPSIPTPGSFTTPAGHGPSTTAPSAAGXXXXXXXXXRRNARIDLGFPPGVGVTPPGGVIRRNRTRPPKTTGTAAGPAAEGSWKAATVRAPRPDEGNPMCQKKIFNATGTQGRRAATRAGMFDEVLRSDQTNVNPTETATTGNLRSALGVVVTGEAAARAVIGRMIRNRKAKMAKTAMSKGGEDCSSGVTVGACAHGPISKGADRGGKTGGRSKVACGDREGRGGSAGVLKNKPAKGVSISAGGVSGGLLGEGIFKTVLSSMAKKRLREGLHEIKSNPLDLLRRGFAEVEPAKHGSTALGCHLIKGWEEQKNGNKSRALGHFRRAVASEPENVEALFCKAVLSAQLMELFDALKDFSAAISFKLDETHRAALRQSGASNTKRPSNWVTASGNAAGVYTHGRDGGEARTGQGGGTSGESNVSLAHLYGNRALVHVCLGDDDSALDDLDRAVARDTRNIT----------------GAQQDYSRIRALQMLEQTATDRNAIQETISRPSTPAVKDGPHTGSIALNGSPTTAAXXXXXXXXXXXXXXXXGATGAPEEKGGARRPRAVKSHGKGISSSGGGLVSDGPAAMHARAKSLPSTGARSTTVVVAEPGVGMAEKPPAGHHEHVRRCTSSPLLEKTFLGEVGVGSVIPAPGKSLLLEENKTPASPGHGQRVMEHEGTAQDGGSVAAAADGPATFITRTGAATRTAGYSLPKGRQGDTHTGCGNDRATDSN-DIPAPPAXXXXXXXXXXXXXXXXXXXXXXTM----------------------------TTRTTAGDKSIDAGLSSCSSEHWSDLFRDKRLMEDNFRRRALLRELHLSPTDGGEGRRNRYPDEDGRGGAESEKRNSGGCDRLRKTTGKG 949 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1122.1081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1122.1081.1 >prot_Ecto-sp13_S_contig1122.1081.1 ID=prot_Ecto-sp13_S_contig1122.1081.1|Name=mRNA_Ecto-sp13_S_contig1122.1081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1403bp MCENDTITEGRRGTCLTELTRHRSSVCDAALDTEVGAAVVVPDPQSGLAAback to top mRNA from alignment at Ecto-sp13_S_contig1122:419..12170- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1122.1081.1 ID=mRNA_Ecto-sp13_S_contig1122.1081.1|Name=mRNA_Ecto-sp13_S_contig1122.1081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=11752bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1122:419..12170- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1122:419..12170- >mRNA_Ecto-sp13_S_contig1122.1081.1 ID=mRNA_Ecto-sp13_S_contig1122.1081.1|Name=mRNA_Ecto-sp13_S_contig1122.1081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1122:419..12170- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |