mRNA_Ecto-sp13_S_contig11218.1078.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11218.1078.1
Unique NamemRNA_Ecto-sp13_S_contig11218.1078.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11218.1078.1 vs. uniprot
Match: A0A6H5JQU9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.350e-18
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    4 HVFCLKCVLQWVKKQQNSCPICRAEVCHIKRTLSLAEALEK 126
            HVFCLKCVLQWVKKQQNSCP CRAEVCHIKRTLS AEALEK
Sbjct:  100 HVFCLKCVLQWVKKQQNSCPTCRAEVCHIKRTLSSAEALEK 140
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BLAST of mRNA_Ecto-sp13_S_contig11218.1078.1 vs. uniprot
Match: D8LMP5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.210e-18
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    4 HVFCLKCVLQWVKKQQNSCPICRAEVCHIKRTLSLAEALEK 126
            HVFCLKCVLQWVKKQQNSCP CRA+VCHIK+TLSLAEALEK
Sbjct:   76 HVFCLKCVLQWVKKQQNSCPTCRAKVCHIKKTLSLAEALEK 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11218.1078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQU9_9PHAE2.350e-1895.12RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP5_ECTSI3.210e-1892.68RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11218contigEcto-sp13_S_contig11218:91..216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.5
Seed ortholog evalue6.5e-15
Seed eggNOG ortholog2880.D8LMP5
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.RING-type zinc-finger
EggNOG OGs2D0HG@1,2SE7A@2759
Cds size126
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.3020058-CDS-Ecto-sp13_S_contig11218:90..2161681462585.3020058-CDS-Ecto-sp13_S_contig11218:90..216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11218 91..216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11218.1078.1prot_Ecto-sp13_S_contig11218.1078.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11218 91..216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11218.1078.1

>prot_Ecto-sp13_S_contig11218.1078.1 ID=prot_Ecto-sp13_S_contig11218.1078.1|Name=mRNA_Ecto-sp13_S_contig11218.1078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
EHVFCLKCVLQWVKKQQNSCPICRAEVCHIKRTLSLAEALEK
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mRNA from alignment at Ecto-sp13_S_contig11218:91..216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11218.1078.1 ID=mRNA_Ecto-sp13_S_contig11218.1078.1|Name=mRNA_Ecto-sp13_S_contig11218.1078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11218:91..216- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACACGTGTTTTGCTTGAAATGCGTTCTCCAGTGGGTCAAGAAGCAGCA
AAACAGCTGCCCCATATGCCGCGCAGAGGTGTGCCACATCAAGAGGACGC
TCAGCTTGGCGGAGGCCCTAGAAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11218:91..216-

>mRNA_Ecto-sp13_S_contig11218.1078.1 ID=mRNA_Ecto-sp13_S_contig11218.1078.1|Name=mRNA_Ecto-sp13_S_contig11218.1078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11218:91..216- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACACGTGTTTTGCTTGAAATGCGTTCTCCAGTGGGTCAAGAAGCAGCA
AAACAGCTGCCCCATATGCCGCGCAGAGGTGTGCCACATCAAGAGGACGC
TCAGCTTGGCGGAGGCCCTAGAAAAG
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