mRNA_Ecto-sp13_S_contig11218.1079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11218.1079.1
Unique NamemRNA_Ecto-sp13_S_contig11218.1079.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11218.1079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11218contigEcto-sp13_S_contig11218:2295..3969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size296
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-00_005170.1
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.2432864-UTR-Ecto-sp13_S_contig11218:2294..23791681462585.2432864-UTR-Ecto-sp13_S_contig11218:2294..2379Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11218 2295..2379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.2571125-CDS-Ecto-sp13_S_contig11218:2379..25281681462585.2571125-CDS-Ecto-sp13_S_contig11218:2379..2528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11218 2380..2528 -
1681462585.2702765-CDS-Ecto-sp13_S_contig11218:3908..39691681462585.2702765-CDS-Ecto-sp13_S_contig11218:3908..3969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11218 3909..3969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11218.1079.1prot_Ecto-sp13_S_contig11218.1079.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11218 2380..3969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11218.1079.1

>prot_Ecto-sp13_S_contig11218.1079.1 ID=prot_Ecto-sp13_S_contig11218.1079.1|Name=mRNA_Ecto-sp13_S_contig11218.1079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
NDSLAGAAFFTISGSRPETAGRWSLVPGQGHEKTYHHRRQERQLNRFLSA
AEHSKIYHGPPEAARRKRR*
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mRNA from alignment at Ecto-sp13_S_contig11218:2295..3969-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11218.1079.1 ID=mRNA_Ecto-sp13_S_contig11218.1079.1|Name=mRNA_Ecto-sp13_S_contig11218.1079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11218:2295..3969- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGATAGCTTGGCTGGCGCAGCCTTCTTCACTATCTCTGGCTCGCGTCC
AGAGACAGCAGGTCTGGTGCACAGACGGAGTATAGCTGTAAACTACCGTA
CATGGACGATCATAGCAGTACCGTGCAGCTGTAGAGGAGGTGATTTGCGG
AAAGCAGTCCTCTGGTTTTTGTATAGGTCACACTGCTGTCGACAAAGTTG
CTCTTTCTCACTTAGATACAATAGCCCCGAGGGACACGAAAAGGGCGATC
CTCTTGTTTGTTTTCTTCAGGTACCGTGATTTTCTCCCAACGATCCTGTG
TGTGCATGCGCATTGCGAGGCTGGCCCCCCATTTGTGGAGCCCCATCACA
TACCTCACGCCCCTCAGCGGTGCGAACAAGACTCACCGAGTTATCCCGGT
ACGACGACAAACGACAGGTCGGATCGAGTGACTGCTGTAAAGTCTAGACT
ACACATCATGCTATGTATGCTTGTGTGTATGTCGAATTTATGTGTGGAGT
GGTCGGCCACTCTGCGCCTGTGATCTTCGAACCGACCCGATACCTAGAAA
GGATGCCAGGGGTTTGCTGTTACTGTTGCAGCTTTCGAACACCGTTGGGT
TCGAAACCACAACGTGTGCTCTCCGACCCTTCCTCCCCTCTATCCTTCTC
TTCGGTCGCTAGAAGCTGACATGGTTGGGATCGGCTCCTGGCCTAAAGTC
TACGTCGGTCAACTTGCGGACGGCAAAAACTACATACAACCCGCACTCGC
CACGCACGGACAAGATACTTGTGTGTATGAAATAATACCTCAAGCAGCCT
TTAGTCTACGCCACCAAGTTTTTACCTTTCACCTGGAACACACATTTCAC
CAGGCATGCTAATCCGCTTCGGGGCCTCGGGTCAACCCTGGACTTTCGTC
TGAGGCATCGAACCTTCCGTGTTGGGTGTCTCTTACAATAAATAGCATCT
TTGCGCATTTCGGCCGATCAGTGAAAAGGCACGTGAAATTGGTGCTGCTG
TGCTATGAAAGCATGAACGTGTGCGAGCGAAGCTGCTACTAATAGACGAA
TCCCCTATGCGCCTACACTAGTAGGAGGCTCCTATATACTCCGGAGTACA
TTGAAACGCGACCGGTTCACACCGTCCTACCTGGACCCTGGGACAACTAC
AGTACATAGTGGTGAAAACATTCCGTGCGTTTGGTGTTGAATTTGTGACT
TTTCGTCCAGACATGCTCATCATGTCGGAGCACGCATGATGAAACGACTC
AATGCCCCCTGGCACCCGGGAGAGACACAAAGAGTTATTTCCAGGAACTT
AATACGACAACAAGAGAGGTTGGTGGCGCGATCAACTGTACACCGCTCCA
CGGCTTCTCTTTGAATCTGTAAGGGGGAAATAGAGTAGTACAGTAGTTCG
ATCATTAAATCGCACTGATGGACCTCTCCTCAACGTTGTAGGACGGTGGA
GCCTCGTCCCCGGTCAAGGACATGAGAAGACATACCACCACCGCCGTCAA
GAACGACAGCTTAACCGCTTCCTCTCAGCCGCCGAGCACTCAAAGATCTA
CCATGGACCCCCCGAGGCGGCCAGGAGGAAGAGACGATGAACCCAGGTCT
CACTGGGTCGATCCTGGCTACTGCAAGTACTGCCCCGGCACCGCGCCAAC
GCCGCACCCTTCAAAGATCACCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11218:2295..3969-

>mRNA_Ecto-sp13_S_contig11218.1079.1 ID=mRNA_Ecto-sp13_S_contig11218.1079.1|Name=mRNA_Ecto-sp13_S_contig11218.1079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11218:2295..3969- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGATAGCTTGGCTGGCGCAGCCTTCTTCACTATCTCTGGCTCGCGTCC
AGAGACAGCAGGACGGTGGAGCCTCGTCCCCGGTCAAGGACATGAGAAGA
CATACCACCACCGCCGTCAAGAACGACAGCTTAACCGCTTCCTCTCAGCC
GCCGAGCACTCAAAGATCTACCATGGACCCCCCGAGGCGGCCAGGAGGAA
GAGACGATGA
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