mRNA_Ecto-sp13_S_contig11216.1076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11216.1076.1
Unique NamemRNA_Ecto-sp13_S_contig11216.1076.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: D8LQF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF6_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 8.750e-43
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1
Query:    7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQAQAKKR 258
            +YMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAV+VRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQAQ KKR
Sbjct: 1085 KYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVMVRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQAQGKKR 1168          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: I2CR68_NANGC (U3 small nucleolar RNA-associated protein 14 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR68_NANGC)

HSP 1 Score: 87.4 bits (215), Expect = 7.070e-20
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
            V++VPYPFTSREQYERSLR+PIG EWNT+ +VR  TRPAV VRAG  V P+KL K HR
Sbjct:  105 VAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 162          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: W7U2D1_9STRA (Small nucleolar ribonucleoprotein complex subunit utp14 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2D1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.490e-19
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
            V++VPYPFTSREQYERSLR+PIG EWNT+ +VR  TRPAV VRAG  V P+KL K HR
Sbjct:  230 VAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 287          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A4D9D2C2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2C2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.270e-18
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
            V++VPYPFTSREQYERSLR+PIG EWNT+ +VR  TRPAV VRAG  V P+KL K HR
Sbjct: 1065 VAQVPYPFTSREQYERSLRRPIGKEWNTTTAVREETRPAVKVRAGFLVEPIKLRKTHR 1122          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A835YMG1_9STRA (U3 small nucleolar RNA-associated protein 14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.760e-16
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHR 189
            ++++PYPFTS+EQYER++RQP+G EWNT  SVR +TRP V+ + G  + P+KL K  R
Sbjct:   78 IAQIPYPFTSKEQYERAMRQPLGPEWNTPSSVRELTRPQVIFQPGAVIDPLKLPKSAR 135          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A225WXS1_9STRA (U3 small nucleolar RNA-associated protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXS1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.070e-15
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVK 219
            +YMV +VPYPFTSRE+YE ++R P+G +WNTSQ    +T P ++  AG A+AP+ L K  R  A++  ++K
Sbjct:  837 KYMVKDVPYPFTSREEYEAAMRNPLGSDWNTSQVTNVLTAPKIMKHAGTAIAPLVLSKDDRKQAKKELSLK 907          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A1V9YG55_9STRA (U3 small nucleolar RNA-associated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YG55_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.850e-15
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARE 204
            ++M + VPYPFTSREQYE ++R P+G +WNT++S  A+T PAV++RAG  + P++L K  ++ A E
Sbjct:  207 KFMCATVPYPFTSREQYEMAMRNPLGSDWNTTKSTNALTVPAVMLRAGKIIQPLQLTKEQKNQATE 272          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A397F2E1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F2E1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.010e-14
Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKL 174
            ++MV+ VPYPFTSREQYE ++R P+G +WNT+++  AMT P V+ RAG  + P++L
Sbjct:   31 KFMVNTVPYPFTSREQYELAMRNPLGSDWNTARASNAMTVPEVMARAGKIIQPLRL 86          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A059LBX5_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LBX5_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.780e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   16 VSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVKEAKGATQA 243
             +EVP+PF SRE YERSLRQP+G ++NT  + RA+TRPAV+  AG  +APM+  +     ARE +A   AKG  +A
Sbjct:    6 TAEVPFPFESREAYERSLRQPLGRDFNTEAAFRALTRPAVLKDAGAIIAPMQFSRGLAKEAREGNAA--AKGRARA 79          
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Match: A0A0P1A9F4_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9F4_PLAHL)

HSP 1 Score: 76.6 bits (187), Expect = 1.990e-14
Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    7 RYMVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVAPMKLGKIHRDNARERSAVK 219
            ++M+ +VPYPFTSR++YE ++R P+G +WNTSQ    +T P ++  AG A+AP+KL K  R  A++  ++K
Sbjct:  779 KFMLKDVPYPFTSRQEYEAAMRNPLGSDWNTSQVTNVLTAPKIMKHAGTAIAPLKLSKEDRKFAKKELSLK 849          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11216.1076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQF6_ECTSI8.750e-4396.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I2CR68_NANGC7.070e-2072.41U3 small nucleolar RNA-associated protein 14 n=1 T... [more]
W7U2D1_9STRA7.490e-1972.41Small nucleolar ribonucleoprotein complex subunit ... [more]
A0A4D9D2C2_9STRA3.270e-1872.41Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YMG1_9STRA3.760e-1655.17U3 small nucleolar RNA-associated protein 14 n=1 T... [more]
A0A225WXS1_9STRA3.070e-1547.89U3 small nucleolar RNA-associated protein n=1 Tax=... [more]
A0A1V9YG55_9STRA5.850e-1550.00U3 small nucleolar RNA-associated protein (Fragmen... [more]
A0A397F2E1_9STRA1.010e-1453.57Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A059LBX5_9CHLO1.780e-1451.32Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A0P1A9F4_PLAHL1.990e-1445.07Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11216contigEcto-sp13_S_contig11216:4742..4999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score154.8
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog2880.D8LQF6
Preferred nameUTP14A
Model size258
KEGG koko:K02350,ko:K14567
KEGG Pathwayko01100,ko01524,ko03008,ko03460,map01100,map01524,map03008,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016319,GO:0019953,GO:0022414,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051704,GO:0060322,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
Exons1
EggNOG free text desc.endopeptidase inhibitor activity
EggNOG OGsCOG5644@1,KOG2172@2759
EC2.7.7.7
Cds size246
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.0614772-CDS-Ecto-sp13_S_contig11216:4741..49871681462585.0614772-CDS-Ecto-sp13_S_contig11216:4741..4987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11216 4742..4987 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.0879953-UTR-Ecto-sp13_S_contig11216:4987..49991681462585.0879953-UTR-Ecto-sp13_S_contig11216:4987..4999Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11216 4988..4999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11216.1076.1prot_Ecto-sp13_S_contig11216.1076.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11216 4742..4987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11216.1076.1

>prot_Ecto-sp13_S_contig11216.1076.1 ID=prot_Ecto-sp13_S_contig11216.1076.1|Name=mRNA_Ecto-sp13_S_contig11216.1076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MVSEVPYPFTSREQYERSLRQPIGGEWNTSQSVRAMTRPAVVVRAGVAVA
PMKLGKIHRDNARERSAVKEAKGATQAQAKKR
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mRNA from alignment at Ecto-sp13_S_contig11216:4742..4999-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11216.1076.1 ID=mRNA_Ecto-sp13_S_contig11216.1076.1|Name=mRNA_Ecto-sp13_S_contig11216.1076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11216:4742..4999- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAACAGGTACATGGTGTCCGAAGTTCCCTACCCCTTCACCTCCCGAGA GCAGTACGAGCGGAGCTTGCGCCAGCCGATCGGCGGGGAGTGGAACACCT CTCAGAGCGTGCGCGCCATGACACGGCCGGCGGTCGTGGTGCGTGCCGGT GTCGCCGTCGCCCCGATGAAGCTGGGGAAGATCCACAGGGACAACGCGCG GGAGAGGAGCGCCGTAAAGGAGGCGAAAGGGGCGACGCAGGCACAGGCCA AGAAAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11216:4742..4999-

>mRNA_Ecto-sp13_S_contig11216.1076.1 ID=mRNA_Ecto-sp13_S_contig11216.1076.1|Name=mRNA_Ecto-sp13_S_contig11216.1076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11216:4742..4999- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCCGAAGTTCCCTACCCCTTCACCTCCCGAGAGCAGTACGAGCG
GAGCTTGCGCCAGCCGATCGGCGGGGAGTGGAACACCTCTCAGAGCGTGC
GCGCCATGACACGGCCGGCGGTCGTGGTGCGTGCCGGTGTCGCCGTCGCC
CCGATGAAGCTGGGGAAGATCCACAGGGACAACGCGCGGGAGAGGAGCGC
CGTAAAGGAGGCGAAAGGGGCGACGCAGGCACAGGCCAAGAAAAGG
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