mRNA_Ecto-sp13_S_contig11215.1075.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11215.1075.1
Unique NamemRNA_Ecto-sp13_S_contig11215.1075.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: D7G348_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G348_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 8.670e-76
Identity = 118/141 (83.69%), Postives = 124/141 (87.94%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            FH+VSTDASAPETRNGTIMVHSTITEMLAN+M GRAVETKAKLYAKAAASTD IR +S EVGKS QVCSDCP  LLPFHVK +PEPVC+IVESL  Q K GEVW+GDLCPDWCMKQAPVSQT TESDVV VREC  NT QP
Sbjct:  281 FHFVSTDASAPETRNGTIMVHSTITEMLANVMVGRAVETKAKLYAKAAASTDEIRKISAEVGKSFQVCSDCPGSLLPFHVKGIPEPVCDIVESLPGQAKTGEVWSGDLCPDWCMKQAPVSQTKTESDVVKVRECGGNTDQP 421          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 7.530e-70
Identity = 113/141 (80.14%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            FHYVS+DASAPETRNGTIMVHSTITEMLAN+M GRAVETKAKLYAKAAASTD IR MS EVGKS QVCSDCP  LLPFHVK++PE VCEIVESL    K GEVW G LCPDWCMKQAP+SQ+ TES VV VR C  NT QP
Sbjct:  401 FHYVSSDASAPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMSAEVGKSFQVCSDCPSALLPFHVKAIPESVCEIVESLPGHAKTGEVWAGSLCPDWCMKQAPMSQSKTESGVVEVRRCPRNTDQP 541          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: A0A6H5JGW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW9_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 3.730e-65
Identity = 112/158 (70.89%), Postives = 118/158 (74.68%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQ-----------------VCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            FHYVS+DAS PETRNGTIMVHSTITEMLAN+M GRAVETKAKLYAKAAASTD IR M+ EVGKS Q                 VCSDCP  LLPFHVK++PE VCEIVESL    K GE W GDLCPDWCMKQAPVSQ+ TES VV VR C  NT QP
Sbjct:  394 FHYVSSDASGPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMNAEVGKSFQAKAGTRRNGQFQREFVTVCSDCPSSLLPFHVKAIPESVCEIVESLPGHAKTGEAWPGDLCPDWCMKQAPVSQSKTESGVVEVRRCRRNTDQP 551          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: A0A6H5K539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K539_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.320e-63
Identity = 103/134 (76.87%), Postives = 112/134 (83.58%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVREC 402
            FHYVS+DAS PETRNGTIMVHSTITEMLAN+M GRAVETKAKLYAKAAASTD IR M+ E GK+ QVCSDCP  LLPFHVK++PE VCEIV+SL    K GE W G LCPDWCMKQAPVSQ+ T+S VV VR C
Sbjct:  373 FHYVSSDASGPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMNAEFGKAFQVCSDCPSALLPFHVKAIPESVCEIVQSLPGDAKTGEAWPGSLCPDWCMKQAPVSQSTTQSGVVEVRWC 506          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.610e-61
Identity = 102/141 (72.34%), Postives = 116/141 (82.27%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            FHY+S + SAPETRNGTIMVHSTITEMLAN++ GRAVETKA L+AKAAAS D I+ +S+EVGKS QVC DCP  LLPFHVK +PEPVCEI+ESL    K G+VW+G LCPDWCMKQ PVSQ  T+SDVV+VR CS  T QP
Sbjct:  476 FHYISKETSAPETRNGTIMVHSTITEMLANVILGRAVETKASLHAKAAASKDEIQKLSSEVGKSFQVCWDCPGTLLPFHVKPIPEPVCEILESLPGGAKMGDVWSGSLCPDWCMKQEPVSQKNTQSDVVDVRMCSARTHQP 616          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: A0A6H5KAH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH4_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 8.780e-58
Identity = 96/141 (68.09%), Postives = 105/141 (74.47%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            FHYVS+DAS PETRNGTIMVHSTI EMLAN          AKLYAKAAASTD IR M+ E GK+ QVCS+ P  LLPFHV+++PE VCEIVESL    K GE W G LCPDWCMKQAPVSQ+ T+S VV VR C  NT QP
Sbjct:   11 FHYVSSDASDPETRNGTIMVHSTIIEMLAN----------AKLYAKAAASTDEIRKMNAEFGKAFQVCSEFPSALLPFHVEAIPESVCEIVESLPGDAKTGEAWPGSLCPDWCMKQAPVSQSTTQSGVVEVRWCRRNTDQP 141          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 7.700e-57
Identity = 93/141 (65.96%), Postives = 110/141 (78.01%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            +HY+S+ AS PE  NG+IMVHST+TEMLAN+M GRAVETKA L+AKAAASTD  +    +VGKS QVCSDCP  L+PFHVK +P+P+CE  ESL    + GEVW G+LCPDWCMKQAPVSQ  T+S  V+VRECS  T QP
Sbjct:  399 YHYISSAASNPEAHNGSIMVHSTMTEMLANVMIGRAVETKAALFAKAAASTDVNKQERADVGKSFQVCSDCPRDLMPFHVKPIPDPICETAESLRGDAQVGEVWNGELCPDWCMKQAPVSQLATQSGPVDVRECSLKTDQP 539          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.060e-55
Identity = 95/141 (67.38%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            +HY+S+  S PE  NGT MVHST+TEMLANIM G+AVETKA+LYAKAAAST        +VGKS QVCSDCP  +LP HVK +PEPVCEIVESL    + GEVW G+LCPDWCMKQAPVSQ  T+S  V+VRECS  T QP
Sbjct:  412 YHYMSSTTSDPEAHNGTTMVHSTMTEMLANIMLGQAVETKAELYAKAAASTGGSEQERADVGKSFQVCSDCPRQMLPVHVKPIPEPVCEIVESLPGNAETGEVWDGELCPDWCMKQAPVSQKETQSGPVDVRECSIETRQP 552          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 3.120e-42
Identity = 96/219 (43.84%), Postives = 108/219 (49.32%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLAN------------------------------------------------------------------------------IMFGRAVETKAKLYAKAAASTDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP 423
            +HYVS+  S PE  NGT MVHST+TEMLAN                                                                              IM GRAVETKA+L+AKAAAST+     S +VGKS QVCSDCP  LLP HVK +PEPVCE VESL    + GEVW G+LCPDWCMKQAPVSQ  T+S  V+VRECS  T  P
Sbjct:  411 YHYVSSTTSDPEAHNGTTMVHSTMTEMLANVSRRRVLTGTKAVSPRHFFVVSGFRDQQRKAGIEGEMLLVSKRTCWDRLQCPCTAEPKPPDAPFVFCRATFLYKSYSQIMIGRAVETKAELHAKAAASTEGSEQQSVDVGKSFQVCSDCPRQLLPAHVKPIPEPVCETVESLPGNAETGEVWDGELCPDWCMKQAPVSQKETQSGPVDVRECSMETRLP 629          
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.290e-24
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAASTDYIRTMSTEVG---KSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKKGEVWTGDLCPDWCMKQAPVSQTMTESDVVNVREC 402
            +HYVS D ++PE   G  MVHS +TEMLAN++  RAV TKA L  +A   +  + + + E     ++ ++C+DCP  L+P HVK  P   C+ V +L      G+ W  + CPDWCM + P  Q    + +V+VR C
Sbjct:  488 YHYVSDDPNSPEAYGGAKMVHSAVTEMLANVLITRAVGTKAALRERAGTHSSDVTSTAEERQADTRTFELCTDCPATLIPLHVKPSPLLKCDTVSALPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 624          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11215.1075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G348_ECTSI8.670e-7683.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHZ4_ECTSI7.530e-7080.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGW9_9PHAE3.730e-6570.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K539_9PHAE1.320e-6376.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGZ7_9PHAE1.610e-6172.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAH4_9PHAE8.780e-5868.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXD9_ECTSI7.700e-5765.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXE0_ECTSI2.060e-5567.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8P1_9PHAE3.120e-4243.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ62_ECTSI1.290e-2439.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11215contigEcto-sp13_S_contig11215:299..1206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score231.5
Seed ortholog evalue2.5e-58
Seed eggNOG ortholog2880.D8LHZ4
Model size427
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2E5RD@1,2SCI8@2759
Cds size426
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462585.0000124-CDS-Ecto-sp13_S_contig11215:298..3881681462585.0000124-CDS-Ecto-sp13_S_contig11215:298..388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11215 299..388 +
1681462585.0204694-CDS-Ecto-sp13_S_contig11215:588..6961681462585.0204694-CDS-Ecto-sp13_S_contig11215:588..696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11215 589..696 +
1681462585.0286198-CDS-Ecto-sp13_S_contig11215:978..12061681462585.0286198-CDS-Ecto-sp13_S_contig11215:978..1206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11215 979..1206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11215.1075.1prot_Ecto-sp13_S_contig11215.1075.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11215 299..1206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11215.1075.1

>prot_Ecto-sp13_S_contig11215.1075.1 ID=prot_Ecto-sp13_S_contig11215.1075.1|Name=mRNA_Ecto-sp13_S_contig11215.1075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
FHYVSTDASAPETRNGTIMVHSTITEMLANIMFGRAVETKAKLYAKAAAS
TDYIRTMSTEVGKSLQVCSDCPPGLLPFHVKSMPEPVCEIVESLTEQGKK
GEVWTGDLCPDWCMKQAPVSQTMTESDVVNVRECSDNTGQP*
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mRNA from alignment at Ecto-sp13_S_contig11215:299..1206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11215.1075.1 ID=mRNA_Ecto-sp13_S_contig11215.1075.1|Name=mRNA_Ecto-sp13_S_contig11215.1075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11215:299..1206+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCACTACGTCTCCACAGACGCGTCCGCCCCCGAAACGCGCAACGGGAC AATCATGGTGCACTCCACGATAACAGAGATGCTGGCTAACGTGAGTCAAA GGCAAATGCTTGTCCAGACTGGAACGGTTGCCCCCAATCGCTTTGGTGGT TTCCGTTTTACGACGCCAACGGACGGTGGTATGTAGAGCAAAAAACAAGA TTCTACACCTTCCCTTCAAGGCCGAGACAAAGCCAGGAGTTCTCCTTTCT TCTTTCGCCGGCCTGCCTGTGTGTAAATTGTAATTTGCAGATCATGTTCG GCCGGGCCGTGGAAACAAAGGCGAAGCTTTATGCAAAAGCCGCCGCATCA ACCGATTACATCCGAACTATGAGCACCGAGGTCGGGAAGTCGCTCCAGGT GAGTGTGCAGCTTCGAGCCAAAAAATTTCGTTTTGTTTGGTTTCGCCTTG ATGCTCCAGCGAGGTGTGACTAGTGCGTCAACCATACATGAGAAGGTGTA GACTGGCGCCCTAAATAGAAGGGACGGCAACAACACGCGAATGTAGTGCT CGACAAAACCATTGTGAAGACTACCGAAGAAGCTGAAGCCTGCAGCATCC GGACGTGCCGCAACGGCCAATTTTCCACGTCCACAGCCCTCTCTCTCGTT TCTCGCCCTCTGACAATGATTATTCATCAGGTGTGTTCGGACTGCCCTCC CGGCCTTCTGCCGTTCCACGTCAAAAGTATGCCTGAACCTGTCTGCGAGA TCGTCGAATCCCTGACCGAACAGGGAAAGAAGGGCGAGGTGTGGACTGGA GACCTGTGCCCGGATTGGTGCATGAAGCAAGCACCTGTGTCTCAGACCAT GACCGAATCAGATGTCGTGAACGTCCGGGAGTGTAGCGACAACACTGGCC AGCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11215:299..1206+

>mRNA_Ecto-sp13_S_contig11215.1075.1 ID=mRNA_Ecto-sp13_S_contig11215.1075.1|Name=mRNA_Ecto-sp13_S_contig11215.1075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11215:299..1206+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCACTACGTCTCCACAGACGCGTCCGCCCCCGAAACGCGCAACGGGAC
AATCATGGTGCACTCCACGATAACAGAGATGCTGGCTAACATCATGTTCG
GCCGGGCCGTGGAAACAAAGGCGAAGCTTTATGCAAAAGCCGCCGCATCA
ACCGATTACATCCGAACTATGAGCACCGAGGTCGGGAAGTCGCTCCAGGT
GTGTTCGGACTGCCCTCCCGGCCTTCTGCCGTTCCACGTCAAAAGTATGC
CTGAACCTGTCTGCGAGATCGTCGAATCCCTGACCGAACAGGGAAAGAAG
GGCGAGGTGTGGACTGGAGACCTGTGCCCGGATTGGTGCATGAAGCAAGC
ACCTGTGTCTCAGACCATGACCGAATCAGATGTCGTGAACGTCCGGGAGT
GTAGCGACAACACTGGCCAGCCGTGA
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