mRNA_Ecto-sp13_S_contig11213.1073.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11213.1073.1
Unique NamemRNA_Ecto-sp13_S_contig11213.1073.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11213.1073.1 vs. uniprot
Match: D7FZ13_ECTSI (Hypothetical secreted protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ13_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.690e-54
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:  520 QAQQYSAASVGSAPSAAGSEDKPTGKVVLPKLLKHTGDEQLAGDIDVGSPAGAWGPDDEEKDDWANLFGMDGARTREGGASPAANLPRFNDFMMDD-MSFSFSYDY*EGAWF 852
            +AQQYSAASVGSAPSAAGSEDKP G +VLPK LKHTGDEQLAGDIDVGSPAGAWGPDDEEKDDW NLFGMDGARTREGGASPA NLPRF D M++D MSFSFSYDY +GAWF
Sbjct:   42 RAQQYSAASVGSAPSAAGSEDKPAGNLVLPKPLKHTGDEQLAGDIDVGSPAGAWGPDDEEKDDWVNLFGMDGARTREGGASPAGNLPRFIDLMVEDGMSFSFSYDY-DGAWF 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11213.1073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ13_ECTSI1.690e-5487.50Hypothetical secreted protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11213contigEcto-sp13_S_contig11213:1625..5318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3036
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionSmall secreted protein imm downregulated 6
Ec32 orthologEc-20_001150.1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462584.8402216-UTR-Ecto-sp13_S_contig11213:1624..38231681462584.8402216-UTR-Ecto-sp13_S_contig11213:1624..3823Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11213 1625..3823 -
1681462584.8863137-UTR-Ecto-sp13_S_contig11213:4937..53181681462584.8863137-UTR-Ecto-sp13_S_contig11213:4937..5318Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11213 4938..5318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462584.8489108-CDS-Ecto-sp13_S_contig11213:3823..38801681462584.8489108-CDS-Ecto-sp13_S_contig11213:3823..3880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11213 3824..3880 -
1681462584.8576353-CDS-Ecto-sp13_S_contig11213:4097..43061681462584.8576353-CDS-Ecto-sp13_S_contig11213:4097..4306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11213 4098..4306 -
1681462584.875667-CDS-Ecto-sp13_S_contig11213:4747..49371681462584.875667-CDS-Ecto-sp13_S_contig11213:4747..4937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11213 4748..4937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11213.1073.1prot_Ecto-sp13_S_contig11213.1073.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11213 3824..4937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11213.1073.1

>prot_Ecto-sp13_S_contig11213.1073.1 ID=prot_Ecto-sp13_S_contig11213.1073.1|Name=mRNA_Ecto-sp13_S_contig11213.1073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MQGNNVPERTRNFVFELTRRKQSRLHHLPLIRHLHVRLPSLFFLGTQAQQ
YSAASVGSAPSAAGSEDKPTGKVVLPKLLKHTGDEQLAGDIDVGSPAGAW
GPDDEEKDDWANLFGMDGARTREGGASPAANLPRFNDFMMDDMSFSFSYD
Y*
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mRNA from alignment at Ecto-sp13_S_contig11213:1625..5318-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11213.1073.1 ID=mRNA_Ecto-sp13_S_contig11213.1073.1|Name=mRNA_Ecto-sp13_S_contig11213.1073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3694bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11213:1625..5318- (Ectocarpus species13 EcNAP12_S_4_19m)
GTACTATGAAAAAAAAACTGTCCGTTCTTTACCGACCCAGAAATCCGCGA
TAGTCTATATATAGCGATGATGGTAATCTCCCCTTTCTACCCCCGTGGAA
CTCGAGATTTTGGTGAAACAGTTTTTGGTTTTTGCTCGTCGCGAAGTATT
GTATTTGCTTGTTTTGGAACTAATTGTTCGTCATTCCCGTCTCCCGCATT
TAAGATTCTTTTTCACTCGCATCTGCGCATGCGCAACAGGGTGAATGCGC
ATGTTTGTGCGCGTCAGGAATTAATTTTTTTCTAGGAGGTAAACGTAACC
TCACAGAAAGACCACCCGTTCTTTTTTGCTTACACGCGACTTTGACGCCT
CTGCGTGCTTCCTTTTTCCCGCGTGGGTATCATGCAGGGCAACAACGTGC
CGGAACGAACGAGAAACTTTGTTTTTGAGCTTACTAGACGGAAACAATCC
CGCCTTCACCACCTCCCTTTGATCCGTCACCTTCATGTTCGGCTTCCCTC
CCTTTTTTTCCTCGGAACGCAGGCCCAGCAGTACTCGGCAGCTTCAGTCG
GCTCTGCGCCCTCCGCTGCCGGTAAGGAGCTAAGCCCTTTGCCGCTATGT
ATCTACCGACACAAGTGTAGTTCTAGTTGTGCCGCCGCAACCCGCACGGC
AGTAAAGTTTTTTTTGTTGGTGTTGGCCGCATAATTCTAAAGGTTCTGGT
TGTTCGTAGGACTGATCGATCGCATTCCCAAACAAAACGTCGACTCTGGA
ACGCATGCATAAATGGGTCATGTTTTCACGTGACCTTCGCGAGGTGTTGC
CTCGAGGCACGAGGTCAACGCCCTCCAAGTAGGGACACTGCTTGGATGGG
GAGTGCCCGGCAAGGACGGCTCTCTCGACGCTGTGTTCCTCCCTGACTCC
TGAAACCATCCCGGTGCCACAGCCGTTTAAGTCGCCCCCCCCCTCCTCCT
CACCACCTGCTCCCACTTCGATTACCATGGCCATGTGCTGCCCTCGCGTG
CTGACTAAGCAGGGTCCGAAGACAAGCCGACGGGCAAGGTCGTCCTCCCC
AAGCTCCTCAAGCACACCGGAGACGAGCAGCTCGCGGGAGACATCGACGT
GGGTAGCCCCGCCGGAGCCTGGGGCCCCGACGACGAGGAGAAGGACGACT
GGGCCAACTTGTTTGGCATGGACGGCGCGCGCACACGCGAGGGCGGTGCC
TCTCCGGCCGCCAACCTGCCGGTACGAACGCCTACCTACCGTATCGTAGC
GAAGCAAAATTTATTATTGTCCGCATGGCGTGTGTTCTTGACCCCGTGGT
GTATCTACGCCGACGTGGTTGACGAAAACTTAAGAACCACGTCCCTCGGA
ACCTACAAATCGACATGTGCTCAACTGGCCGTCTGCTGATCTACCTACTG
CTGCTTGTGTCCTCGATCGATTTTTCGTATTTCTGCAGAGGTTCAACGAC
TTCATGATGGACGACATGTCGTTCTCGTTCAGCTACGACTACTAAGAAGG
CGCTTGGTTCCGCTAAAGAACATCCTAGTAATCGGTTCTGCAAAGCTTAC
TGACGACGTTCACACGGTCAGCCGCTGAGGAGCGGTCCAGCGGCGTCAAG
TCTGCGAACCACTATGGCCGCGGGTGTGGGATGGCGGGAGCACGGCTAGG
TGGTTTGTCACTCGAGAACGAAGAGGACATGAAAACATGTTTTTTTTTGT
CACTCAAGAATGAAAGAGGAGCAGCAAGCGACTTTCGGCGCGTAAATTAG
TTGTTTAGTTTTTTTTTACAGATGAGGAGGTTGAGGGAGTGTAGGACGTG
TTTCGGCGGTGTACTTTTGACAGGGGCGGAGCGTTCCGGTCCTTGATATT
TCTAGCGTTTTTGAACACGACGGTGGGAGGGGGGAGTTTTGTAGTCTGAG
GCCCATATTTTCCTGGGTAAATTAAGCTCGACCGTCAAAAAAATGTTACC
TAGCAGCTGCATTGACTCGAGGTAGAGGGTGACTGCATCCAAGGCTTTGG
CTCCCCTCCTCATCAACGCTGCATGTACTACTATTTTTTTCAGAGCTGCT
TGTTTGTGTGCTTGACGAGTTGAATGCCTCATCATCGCCGTCGTCTTATT
TCGGAAGTACCCCGCAAGGAAGAGCCCCACTTCTCGACGACTTGATGCGC
TCACTGTTACGAGATTGGTCACCACATCGGTGCTTCTCGGAATTTTTGCA
GGCCATTGAAGGAAGTAGGCTCCACCTGTTGGTGGAGGCGGTTTTTGTCA
GTAGTCTGGTGACGAGGGTGTTCACACCCGACCGGTCACTCTCACGGGTC
GACCTTAGCGCTCGTCGCCGGCCTTTCCCGATTCTTGGGGCTCGTCGCAC
AGTTCGAGCTTGTCCCAACCTGTTGAGGAGGGAGCTCTATATCATTATTT
CATTTTGTACCATGTTGTTCTGGGTGTGGTAGTGGTAGTGGCCTCTTTAG
GCCGGAAGGACCATGTATTTTTTGTACTTTTTCCTGTTTTCTCCTTTGGA
GCGAATGCGAGATTCTCCGTGTTATGTGTTAGTACACCAACTTGTTGTGC
AAAGGAAGGCGCGGTTCTGTTGTTGGCTTGGTTGGGCCTCGGAGAACAGT
TGAGGATCGGTATTTTGGTTTGATGTTGTCGAGCAAAGTCAATCTTTCCT
GATCTGACAGGGGGAGGCTTGGCGCCCTCACCGCCGGGTTCAATTATAGC
AAATCCCTCCGCCAGACTCACTGTCTGCGAACATGCATGAGTACGTACTC
CGTTTCGCCTACATGCGGGTATGTTTTGTGTAGAAGACACTGCTGTGGTA
TGGTGTGAAACTGTTATTTTTGTTCCTTTTCCCGTAGTGGGAACGGGGTT
GACGCAGATGAGAGAATGAGGGCGCGGCATTGCAAGTAGGTGAGGCCTTG
TGTGAGATTGGTCGGTTTCCGCATTGTATCCGGTAGTACGCGCTATGTAT
GCGCGTACATTTTGATTTTCGAAACAGCGGTGGAAACGATGAGGCCGCAG
TTTTTAGTTCAGTGATTCATGCACGTACGCACTTGCTTTCCGTGCATCCG
TCTGTAAACATGAACGCTTCCATCGTGCTTTGCGCACTCTGGTTGCCCTT
AAGGTAGTATGCGACCGACCGACCGATTTTGACTCCCTGCGGGTCTGGTC
GAAAGTTATGTTTCGTATTTTAGGGTTGGGAAATCTCTCGAAAGTTGTTT
GTTTCGATGGCTTCTTGTCTCTCAATCATCTTGGGCCCGCTCGTCGCGCA
ACACGTGGGTCCATTGTACGTTATATACGCACTTTGTGGCTGGTGCATCA
GCTAGCTGTGTAAATGTTTGGCGGCGTTACTCCATCAACGCCTTCAGAGC
CGAGTCTTTACCTGATCCAACCCAGGATGACTTGCCTTCGGGTATGTATC
CATGATGTGTGTTGGAGCGTCCGATATCTCCAAAGGGAGGGCCGGGCGTG
TATTCTGGGGTCTTCCACGAACCGGCGAGTGACGAAACACAACACTCTCG
AGCCGGTAACGCATCCGTCAGCTCTCAACAAGCTCCAACTCGCACGTGCA
ACTCGCAGATTGCGAAAATAGCTCCCCTTTCGTGTCTTAAGCTGTCGAGG
TCTTCTTGCCGTTTGACGCCACCGTTCAGAAAATTCCTCAACGACCTACT
TTCTTCATGCGTTGCACCCCACAAAAAAAAATGGCAGAAGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11213:1625..5318-

>mRNA_Ecto-sp13_S_contig11213.1073.1 ID=mRNA_Ecto-sp13_S_contig11213.1073.1|Name=mRNA_Ecto-sp13_S_contig11213.1073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11213:1625..5318- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGGCAACAACGTGCCGGAACGAACGAGAAACTTTGTTTTTGAGCT
TACTAGACGGAAACAATCCCGCCTTCACCACCTCCCTTTGATCCGTCACC
TTCATGTTCGGCTTCCCTCCCTTTTTTTCCTCGGAACGCAGGCCCAGCAG
TACTCGGCAGCTTCAGTCGGCTCTGCGCCCTCCGCTGCCGGGTCCGAAGA
CAAGCCGACGGGCAAGGTCGTCCTCCCCAAGCTCCTCAAGCACACCGGAG
ACGAGCAGCTCGCGGGAGACATCGACGTGGGTAGCCCCGCCGGAGCCTGG
GGCCCCGACGACGAGGAGAAGGACGACTGGGCCAACTTGTTTGGCATGGA
CGGCGCGCGCACACGCGAGGGCGGTGCCTCTCCGGCCGCCAACCTGCCGA
GGTTCAACGACTTCATGATGGACGACATGTCGTTCTCGTTCAGCTACGAC
TACTAA
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