mRNA_Ecto-sp13_S_contig11212.1072.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11212.1072.1
Unique NamemRNA_Ecto-sp13_S_contig11212.1072.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: A0A6H5KMM8_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM8_9PHAE)

HSP 1 Score: 439 bits (1128), Expect = 8.780e-155
Identity = 203/217 (93.55%), Postives = 211/217 (97.24%), Query Frame = 1
Query:  169 MYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHSTGACKDNRPQFFGDDGRYKKMLEQEQLFRDWYRPYNERLYSLIGKDLKWD 819
            MY+FYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVN+RL+ FHAPGRAAGYLNRGT KVERYAPLCRGVNAEPGDLAKCF+A NGQNPLLRGLYADQLERWFA F RSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYY+SDFQHSTGACK+NRPQFFG+DGRYKKMLEQEQLFRDWYRP+NERLYSLIGKD KWD
Sbjct:    1 MYVFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNYRLRAFHAPGRAAGYLNRGTDKVERYAPLCRGVNAEPGDLAKCFMAINGQNPLLRGLYADQLERWFAVFSRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYNSDFQHSTGACKENRPQFFGEDGRYKKMLEQEQLFRDWYRPHNERLYSLIGKDFKWD 217          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: D7G3W5_ECTSI (Similar to heparan sulfate sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W5_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 2.040e-119
Identity = 186/273 (68.13%), Postives = 193/273 (70.70%), Query Frame = 1
Query:    1 SLGEWPGNTGDARRKQLPVSAAGEVLELYSNATMRTIGAPDELEEAGVTVTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHSTGACKDNRPQFFGDDGRYKKMLEQEQLFRDWYRPYNERLYSLIGKDLKWD 819
            SLGEWPGNTGDARR +LP SAAGEVLELYSNATMRTIGAPDELEEAGVTVTV+SSPMYIFYPLAPYRMKMVQPHARLVVILKDPTAR                                               + A   RG +                    R    +QLERWFA FPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQH TGACKDNRPQFFG+DGRYKKMLEQEQLFRDWYRP+NERLYSLIGKDLKWD
Sbjct:  166 SLGEWPGNTGDARRAKLPASAAGEVLELYSNATMRTIGAPDELEEAGVTVTVDSSPMYIFYPLAPYRMKMVQPHARLVVILKDPTAR-----------------------------------------------KIAVFLRGFSD-------------------RKRQPNQLERWFAVFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHGTGACKDNRPQFFGEDGRYKKMLEQEQLFRDWYRPHNERLYSLIGKDLKWD 372          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: A0A6H5JDR2_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR2_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 3.750e-87
Identity = 136/271 (50.18%), Postives = 177/271 (65.31%), Query Frame = 1
Query:   10 EWPGNTGDARRKQ-LPVSAAGEVLELYSNATMRTIGAPDELEEAGVTVTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHSTGACKDNRPQFFGDDGRYKKMLEQEQLFRDWYRPYNERLYSLIGKDLKWD 819
            EW    GD R    L  SAAGEVL  Y++  M  +    +  +     TVES+P+Y FYPLAPYRMKMV P ARLV+IL+DPT RYFSH RM MC   D          +   FH PGR   YL RG    + Y PLCRG  A   DL +C+ A    +PL RGLYADQLERWF  +PRSQILV++SSE++ +F  TL++ ARH+GLPPH + YDS  QH++  C+ N P+ F + GRY+KMLE +++ ++WYRP+NERLY L+G+++ W+
Sbjct:  269 EW---RGDGRGGAGLNSSAAGEVLSAYADRAMEAV----DPRKRDTMATVESTPLYFFYPLAPYRMKMVLPAARLVLILRDPTERYFSHLRMMMCWTRDSETFDHLEKRQKTYFHIPGRVKEYLERGEASYKPYTPLCRGEEARAKDLLRCWKAMVTHDPLHRGLYADQLERWFRVYPRSQILVLESSEMFGNFTGTLDKVARHIGLPPHGYEYDSRHQHASAPCERNHPELFAEGGRYQKMLEDQRVLQEWYRPHNERLYRLLGREMPWE 532          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: D7G3W4_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W4_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.010e-83
Identity = 128/229 (55.90%), Postives = 157/229 (68.56%), Query Frame = 1
Query:  148 VTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMC-GKIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHSTGAC----KDNRPQFFGDDGRYKKMLEQEQLFRDWYRPYNERLYSLIGKDLKWD 819
            VTVESSP YIF PLAPYRM MVQP ARLV++L+DPT RYFS  RMTMC GK +++  +   N +   FH+PG AAGY++ G    E Y PLCRG NA   DL  C+ A    +PLLRGLYADQLERWF  F +SQIL++DS+ +  D    L   A H+GLP  DF  D   QHSTG C    +   P FFG++GRY KMLE+E LFR+WYRP+NERL+ L+G+ + WD
Sbjct:   12 VTVESSPRYIFNPLAPYRMGMVQPFARLVLVLRDPTDRYFSQLRMTMCSGKTNQTFERVQEN-QATWFHSPGDAAGYIDGGEATYEPYTPLCRGENATTEDLRDCYRAQLPHHPLLRGLYADQLERWFRVFDKSQILIVDSANMMEDLPGVLADVAAHIGLPGSDFDSDRPVQHSTGLCPALGRGEDPDFFGEEGRYDKMLEEEDLFREWYRPHNERLFKLLGRSMMWD 239          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: D7FST9_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST9_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.760e-70
Identity = 122/242 (50.41%), Postives = 157/242 (64.88%), Query Frame = 1
Query:   10 EWPGN-TGDARRKQLPVSAAGEVLELYSNATMRTIGAPDELEEAGVTVTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNFRLQE-FHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHSTGACKDNRPQFFGDDGRYKK 729
            EWPG+  G A    L  SAAGEVL  Y++  M+ +    +  +     TVESSP+Y+F+PLAPYRM+MV P ARLV+IL+DPT RYFSH RM MCG  D  +    +  RL+  FH PGR   YL +G    + Y PLCRG  A   DL +C+ A    +PL RGLY DQLERW   +PRSQILV++SSE++ DF  TL + ARH+GLPPHDF YDS  QH++  C+ + P+ F + GRY +
Sbjct:  325 EWPGDGRGGAG---LNPSAAGEVLSAYADRAMKAV----DPSKRDTMATVESSPLYLFFPLAPYRMRMVLPAARLVLILRDPTERYFSHLRMMMCGTRD-GETFDQLEERLETYFHIPGRVKEYLEQGEASYKPYTPLCRGEGARAKDLLRCWKAMVTHDPLHRGLYVDQLERWLRVYPRSQILVVESSEMFGDFTGTLNQVARHIGLPPHDFSYDSRHQHASAPCERHHPELFAEGGRYSR 558          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: D7G9G8_ECTSI (Putative deacetylase sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G8_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 3.500e-57
Identity = 114/253 (45.06%), Postives = 141/253 (55.73%), Query Frame = 1
Query:    4 LGEWPGNTGDARRKQLPVSAAGEVLELYSNATMRTIGAPDE-------LEEAGVTVTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNFRLQ-EFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHSTGACKD-----NRPQFFGDDGRY 723
            LG W G   D R K+L   A G +L  Y+   +   G P +       +      V VESSP YI  P+APYRM+MV P A+LVV+L+DPT RYFS  RM MC K +      S+  ++   FH PG+A GY+ R       Y   CRG NA   DL  CF A    NPL RGLYADQLERWF  + +SQILVIDS+E++ +F  T+   A   GLP H+F YD       GAC+D     N+P FF D GRY
Sbjct:  178 LGHWQG---DGREKELSPGAIGRILSEYAKTCLEE-GKPKKKPAWHKNVAAMSSGVIVESSPRYILSPIAPYRMRMVLPRAKLVVVLRDPTDRYFSQLRMVMC-KTEPDPGYMSLEEQISTHFHPPGQAKGYIKRAEAAYNPYGERCRGENATSADLWNCFKAMATHNPLHRGLYADQLERWFRVYDKSQILVIDSAEMFVNFTETVAVVAEWAGLPEHEFEYDK--HEFKGACRDKIRYHNQPDFFADGGRY 423          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: A0A6H5KC11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC11_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.220e-41
Identity = 78/136 (57.35%), Postives = 90/136 (66.18%), Query Frame = 1
Query:  148 VTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMC-GKIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQI 552
            VTVESSP YIF PLAPYRM MVQP ARLV++L+DPT RYFS  RMTMC GK +++            FH+PG AAGY++      E Y PLCRG  A   DL KC  A    +PL RGLYADQLERWF  F +SQ+
Sbjct:   12 VTVESSPTYIFNPLAPYRMGMVQPFARLVLVLRDPTDRYFSQLRMTMCSGKANQTFEGVKE---AAWFHSPGDAAGYIDGAEATYEPYTPLCRGEKATAMDLRKCSRAQRRHHPLFRGLYADQLERWFRVFDKSQV 144          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: A0A6H5K695_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K695_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.100e-34
Identity = 86/273 (31.50%), Postives = 133/273 (48.72%), Query Frame = 1
Query:   10 EWPGNTGDARRKQLPVSAAGEVLELYSNATMRTIGAPDELEEAGVTVTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCG-KIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATN-GQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPP-HDFYYDSDFQHSTGACKDNRPQFFGDDGRYKKMLEQEQLFRDWYRPYNERLYSLIGKDLKWD 819
            EWPG   D   K+LP S  G++LE ++     +    + ++   + VT   SP Y    LAPYR+K+  P  ++VV+L+DPT RY+S  R  +C  ++D     +S       F  PG   GYL+        Y   C G  A   DL  C         PLL+GLYA QL+RW  AF  SQ+LV+ + +L+++   T    A+  GL   H F+  +  + ++   +   P+       Y K  E E   R WY  +N+ +  L+G+++ W+
Sbjct:   21 EWPG---DNLEKELPASVLGKLLEEFARPYTVSESRQEGID-GPILVTTAVSPGYFSSHLAPYRLKLAIPDVKVVVVLRDPTDRYYSELREALCADEVDWEDIMSS-------FAMPGACKGYLSDAVLDYSPYDKRCLGEGASAADLWACQKGLEKSHTPLLKGLYAAQLDRWQRAFGESQVLVVQAEKLFQEPEKTAAEVAKFAGLAAEHSFFEFAVDREASCDPRRKNPEVVT---AYSKRKESEPQLRKWYAEHNDIVSELLGEEMGWN 279          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: D8LJ80_ECTSI (N-deacetylase/N-sulfotransferase (Heparan glucosaminyl) 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ80_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.820e-32
Identity = 86/274 (31.39%), Postives = 132/274 (48.18%), Query Frame = 1
Query:   10 EWPGNTGDARRKQLPVSAAGEVLELYSNATMRTIGAPDELEEAGVTVTVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCG-KIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATN-GQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPP-HDFY-YDSDFQHSTGACKDNRPQFFGDDGRYKKMLEQEQLFRDWYRPYNERLYSLIGKDLKWD 819
            EWPG   D   K+LP S  G++LE ++     +    + ++   + VT   SP Y    LAPYR+K+  P  ++VV+L+DPT RY+S  R  +C  ++D     +S       +  P  +  YL+        Y   C G  A   DL  C         PLL+GLYA QLERW  AF  SQ+LV+ + +L+++   T    A+  GL   H F+ +  D + S    +   P+       Y K  E E   R WY  +N+ +  L+G+++ W+
Sbjct:  214 EWPG---DNLEKELPASVLGKLLEEFARPYTVSESRHEGVDAPNL-VTTAVSPGYFASHLAPYRLKLAMPDVKIVVVLRDPTNRYYSELREALCADEVDWEDIMSS-------YAMPAASKDYLSDAVLDYSPYDKRCLGEGASAADLWACQKGLEKSHTPLLKGLYAPQLERWQRAFGESQVLVVQAEKLFQEPEKTAAEVAKFAGLAAEHTFFEFAVDREASCDPRRKKNPEVVT---AYSKRKESEPQLRKWYAEHNDMVSELLGEEMGWN 473          
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Match: A0A839PY38_9MICO (Sulfotransfer_1 domain-containing protein n=2 Tax=Terracoccus luteus TaxID=53356 RepID=A0A839PY38_9MICO)

HSP 1 Score: 97.4 bits (241), Expect = 4.190e-20
Identity = 72/222 (32.43%), Postives = 100/222 (45.05%), Query Frame = 1
Query:  151 TVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKIDESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDLAKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTLERAARHLGLPPHDFYYDSDFQHSTGACKDNRPQFFGDDGRYKKMLEQEQLFRDWYRPYNERLYSLIGKDLKW 816
            T E+SP Y+++PLAP R+    P  R V +L+DP AR  SH R ++   ++   P +  +    E     R A YL       E +A L            + F   +      RGLYADQLERWF   PR Q+LV+ S E+Y D  P  +R    LGL PH            G     +P+   D      + E E+ F     P+N+RL +L+G    W
Sbjct:  103 TFEASPYYLYHPLAPQRIAAAMPEGRFVALLRDPAARAVSHYRHSVERGVE---PLSFADALAAEDE---RLAPYLGHDVTSREAHAAL------------RSFSYAS------RGLYADQLERWFEHVPREQVLVLKSEEMYADPAPVYDRVLDFLGLAPHT-------PDRFGVFSRPKPRI--DAPADSTLAELERRFA----PHNDRLANLLGWSGSW 287          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11212.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMM8_9PHAE8.780e-15593.55Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7G3W5_ECTSI2.040e-11968.13Similar to heparan sulfate sulfotransferase n=1 Ta... [more]
A0A6H5JDR2_9PHAE3.750e-8750.18Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7G3W4_ECTSI1.010e-8355.90Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7FST9_ECTSI1.760e-7050.41Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7G9G8_ECTSI3.500e-5745.06Putative deacetylase sulfotransferase n=1 Tax=Ecto... [more]
A0A6H5KC11_9PHAE1.220e-4157.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K695_9PHAE1.100e-3431.50Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D8LJ80_ECTSI1.820e-3231.39N-deacetylase/N-sulfotransferase (Heparan glucosam... [more]
A0A839PY38_9MICO4.190e-2032.43Sulfotransfer_1 domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11212contigEcto-sp13_S_contig11212:1130..5516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score356.3
Seed ortholog evalue1.3e-95
Seed eggNOG ortholog2880.D7G3W5
Model size822
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
Cds size822
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11212.1072.1prot_Ecto-sp13_S_contig11212.1072.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11212 1130..5516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462584.702479-CDS-Ecto-sp13_S_contig11212:1129..12321681462584.702479-CDS-Ecto-sp13_S_contig11212:1129..1232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11212 1130..1232 -
1681462584.7132857-CDS-Ecto-sp13_S_contig11212:1777..19471681462584.7132857-CDS-Ecto-sp13_S_contig11212:1777..1947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11212 1778..1947 -
1681462584.7234151-CDS-Ecto-sp13_S_contig11212:2603..26441681462584.7234151-CDS-Ecto-sp13_S_contig11212:2603..2644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11212 2604..2644 -
1681462584.731571-CDS-Ecto-sp13_S_contig11212:2970..30941681462584.731571-CDS-Ecto-sp13_S_contig11212:2970..3094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11212 2971..3094 -
1681462584.7398307-CDS-Ecto-sp13_S_contig11212:3786..39101681462584.7398307-CDS-Ecto-sp13_S_contig11212:3786..3910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11212 3787..3910 -
1681462584.7498329-CDS-Ecto-sp13_S_contig11212:4749..49011681462584.7498329-CDS-Ecto-sp13_S_contig11212:4749..4901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11212 4750..4901 -
1681462584.7618618-CDS-Ecto-sp13_S_contig11212:5408..55161681462584.7618618-CDS-Ecto-sp13_S_contig11212:5408..5516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11212 5409..5516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11212.1072.1

>prot_Ecto-sp13_S_contig11212.1072.1 ID=prot_Ecto-sp13_S_contig11212.1072.1|Name=mRNA_Ecto-sp13_S_contig11212.1072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
SLGEWPGNTGDARRKQLPVSAAGEVLELYSNATMRTIGAPDELEEAGVTV
TVESSPMYIFYPLAPYRMKMVQPHARLVVILKDPTARYFSHARMTMCGKI
DESKPKTSVNFRLQEFHAPGRAAGYLNRGTHKVERYAPLCRGVNAEPGDL
AKCFIATNGQNPLLRGLYADQLERWFAAFPRSQILVIDSSELYRDFLPTL
ERAARHLGLPPHDFYYDSDFQHSTGACKDNRPQFFGDDGRYKKMLEQEQL
FRDWYRPYNERLYSLIGKDLKWD*
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mRNA from alignment at Ecto-sp13_S_contig11212:1130..5516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11212.1072.1 ID=mRNA_Ecto-sp13_S_contig11212.1072.1|Name=mRNA_Ecto-sp13_S_contig11212.1072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11212:1130..5516- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTCGGTGAGTGGCCGGGGAATACTGGTGATGCGAGAAGAAAACAGCT GCCTGTATCGGCGGCCGGAGAAGTGCTGGAGCTCTACTCCAATGCTACCA TGAGAACAGTAAGGAAGAGAAGCACAATTCATACAGTAGAGTGTGCGCTG CCCTGCAGGAAGGAGGAAAAAGGGCGGATGTTTCTTAGACCGAAAAGAGA ACGAAAAAACGCTGTGAAAAATTGACATTATCCTTGAAGTTTTTTGGTGT TTGCCGCAAAAACAGCATAGCTGTACGATTACGCTCCACCAGATCGCGAC CACACGAGAGCCCTCCAAGGAAATCGAGACAGGGCTACATGGGGTCGGGT TTTCCTGGTTCATTCGCAGGATGATCGATAACCAAACTCAAAAACTGAGC GTGGTAACCCCACGAAAAGGAATCCGAACTTCAAGCACGCTACGGCATGA ATACCGTACGGTGCTGCTTCAACTCTCGGGTACTGTGGTTTGAAATTTCG GGTGACAATGCCGTTGATACTCTCTGTCCACCCTGGACATGTGTAGTCAC AGACAAACCTCTTGCCGCCGCCCAATCTGCTCTCGATTTCAAACCATGAT CGGTCCTCGCGATAGATCGGCGCGCCTGATGAACTTGAGGAGGCTGGAGT AACCGTTACGGTGGAATCGTCTCCAATGTACATCTTCTACCCGCTGGCGC CGTACCGCATGAAAATGGTGCAGCCCCACGCCAGGCTTGTGGTCATTCTC AAAGACCCCACGGCAAGGTGAACGAAGCTTTAGACCATCCCATTGACGCA TGCTGTAGTTCCCTCTAGACTAGTAAAATGTACTTCGAAGTGCGTATTTA GTACTGGTCGTCTTTCTGGTGAATCCGGCGATTGCTCTTGAGCTTCGAGA ACCAGTGTTTTCGAATGAAGGCGTTCGGCGGAAAGGTCCTCCACGGGAAA CGTTACGGCGGTCGATGATACGCGCACGTACGCGTTTACTCGTCCGGGGG ACGGACCTGTGGGATAGACCCCTTCTTTTTCAGTCGCTGCTCTTCCCGCT GACGTTCCCCGGCGTCCCACCTGCAAGGATTGCTTGCATCGTGTCTATGC CGTCAGTCTGCCAAAAGACACCCGTAGCTGCGGAGCTGCTCAGCGAATCG TTCTCATGTCGCAGTAGTGCTATCGGAATACACGAACCCTCCATACCTTG CCCGCCAAATGACGAAATATGACAATATCCACATTCTCGCTCCGAATGGT GGTGAATATTCATTCACTTCGTCGTAGACAAGGAAGTCGTCGGTTGCGTC GGAAAGTGGTATGCTTCGTCCATCCCCGTTGGTAGAACAACGGTTCTCTA TCATCAGACAAGCCGTAATGCCCTTCCGCCCCGAGCTCAAGACCAAAGCC CAATGACATACAATGCGCGCGTTCCATTCGAGACGGCTCCTGAGATACCG TTCTGCAGTGGAAGCGTGCAGCCATCCGAACTTCGAAAAAGTGTCTAAGA ATGTCTTGTTTGTCCGCTGGTCCAGAACATCGACAGAAGATATACATCTA GTAATTGCACGCCTGAGTTTCGGATATGTATCTATCTCCTCATCGCCTCG TAATAGGTACTTTTCGCACGCCCGGATGACGATGTGCGGAAAGATCGACG AGTCCAAACCGAAAACATCCGTGAACTTCCGCCTACAAGAGTTTCATGCT CCCGGGCGAGCAGCTGGATACCTCAATCGGGTGGGTGCGCTCCAGGCAGG ACGCATGTCGGTTCGCCCGCGTCCTGTGGTAGGGTTTGAAGTAGTGGTGG TGGTGAGTTGCAGCGGCGGCGGCGGCGGCGGCGGGATATGATGACTGTGT GTCGTAGGTATGGCAAGCTCCGTGGAAGTTGTACTCTTTCGCATAGTCTA CGCCGCTTTCGTAGGATGAGTGAACCGTTAAAAAACAAATAGAACGCATA GCCAGATGCTCTCTCTTCGGAGGATCATTTAGTCCAAGTCGCACCGGCAA TACTTTGACAGTAACTTGAAGAGACAAAGAGCACTCCAACCTGCATCGTC TCGCAGTCCCAACGTGCGAAGCCGTAGAACGTTTGTCCTCGATCCGTTAT ACTTGTGTAAAAGAGTTATGTTCCGCCTTTGTGCCAGCAACAGCAGTCTA GAAAAACAGCGGTTGACACGTGCGAATCTTGAAGTCCTGCGTGTTTCGTC CCTCGTGTGTGGGCGTATTGTCGTGGAGCTTCCACCTCCTTATTGCTTGG TGGTCTGAACTCGCTACAAATTGATTCGCGCATGTACCTCAACCTGTCGT GATGCGTACGCTTGCGTGGGAACGTTTTCTGAGCTGATAGACTCACTTGG GTAGATGAGCACGGATATCACACTCTTCCTTCCTCCTGATGCTTGTTGCC CTATCCGTGTCTTCAACGTCAGGGCACACACAAGGTCGAGAGGTATGCAC CACTCTGCCGCGGGGTGAACGCGGAGCCGGGCGATCTTGCGAAATGCTTC ATAGCGACAAACGGGCAGAACCCGTTGTTGAGGGGACTGTACGCAGGTAC TACAATACGCAAACGATTCGGATCATGCGCGAGCTGGCTTCTCCTTTGAC GTCTCGAAAATAACCGGCGACATAAAGTAGTGCAGCGCTAGGAAGGGAGG AGTATTCCGTGTCGAGCGGCAAATAACTCTCCACAATGAAAACCAGCTTT GCAGCGTGCATGTCTATGTTAGGCCGGGAGTCTCTGCTTTCTGCCGTACT CTGTATCTCTCTCTCGCTCTCTCCCTGTGGACTAACCCACTTTGCACCGA CGTGTTTTCTCGTCACACCTTGCGCGCACACCATCACCGTGATGACTCGC AAACTACAATCAATGTCTACAGACCAGCTGGAGCGATGGTTCGCGGCGTT TCCTCGATCACAGGTGAAAGCTTTCAGCAAGGGCAGCGCACCGCACTGAC TGTCCGTCCGGAATGCGTGCCGGTGCGAGTGAAAAAGCATAACACAGCAC ACGATAAACACAGGGTTTTTGCGTCGATGGTGTGCGGAACCCTCTTGCGC TCGTTACGTAGCCGCCCCGCAACCTGCATCACGTCGACCGATGTGTCGGC CATTTCTATCGGAGCTGTGAATCGTCCTTAAATGAACGGTTGAGGGCGGC AAGCGTTGGATGCCGGCCCGGCGCGGGCCATGGCACATGCCTTCTGTTAT TTAGTGTTGTGTCGATGGAGTGCAGACGCGAACAGACCAGGCCGACAATC GAGAAACGACGCCAATTTCGTGTCAATGCCCAACTTCTCACTTCACCGAA ACCATTCGCCGAGTTCTGTATTGAGTTTGGGTAGGTGTACTAAAGTGTAT GATCCACCTCTCGGTGATGTGTGGCATCCTGCGCAATTGTTCGTGAATAT CGGCGCCTGTCTCAGGCCATGCTTCTCAACGGCACACTACATTTGTGCGC CCGTTTTGTACCTTGTTTCCTCCCCAAACCCGAAAATTCAACCACACCAA CACAGCACAATATTATATGCAACCCGCCCCCTTCATTTGTTCTGTGCTAT ACACGCAATAACCACAAAGATACTCGTGATCGACTCTTCGGAGCTGTATC GTGACTTCCTCCCAACGCTGGAGAGGGCTGCAAGGCACTTGGGGCTGCCG CCACACGACTTCTACTACGACTCCGACTTCCAACACAGCACCGGCGCGTG CAAGGACAACCGCCCCCAGTTCTTCGGAGACGATGGGAGGTGGGTGATCG ACCGACCGCACCTGTGCGTATGGTAGGCGATGGAGTGAGTGAAGAAATTT CACGTTGACATCCATCCAAAAGAGTGACAAGGCGACAAAGCACGCGTCAA CAGGCTGCGGTTCTCTGTTGTAGACGTGGCAAGAAGCCTACGCCCTAGGG ATCGATTCGAACTCTGTCAAAAACGATGTTCACAGCCGCCGGCGTGCAGC CGCCGGCGTATAGCCGGGCTGTTGGAAGAACCCCGCAAGCATCTCGCGCA GGAACCTTTCGCCGTGGTTGAAGTTCACTCCGATCGCTGATACGCCGTTA GCGTCGCACCTCTTCTCGAGTTCTCGGCATTTACTACAACAAACTCGAAA GCTTTTGAATGTGGATCTACGATCGAACTAAAAGGAAAACGGTGAAGGCT CACTGGGTCCCGCGTCAGAACTCGATATGGGCGTGGTGAATGAAGCGACC GCACCTCCAAGGCTTCTCTATCCTAGGAGGAATGACCTCATTCTGCACGT TCCGCATCCGATCCGCGCTCTGGTCGCCCTTCAGGTACAAGAAGATGCTT GAGCAGGAGCAACTTTTCCGAGACTGGTATAGGCCTTACAACGAACGCCT CTACTCCCTCATCGGCAAAGATTTAAAGTGGGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11212:1130..5516-

>mRNA_Ecto-sp13_S_contig11212.1072.1 ID=mRNA_Ecto-sp13_S_contig11212.1072.1|Name=mRNA_Ecto-sp13_S_contig11212.1072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11212:1130..5516- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTCGGTGAGTGGCCGGGGAATACTGGTGATGCGAGAAGAAAACAGCT
GCCTGTATCGGCGGCCGGAGAAGTGCTGGAGCTCTACTCCAATGCTACCA
TGAGAACAATCGGCGCGCCTGATGAACTTGAGGAGGCTGGAGTAACCGTT
ACGGTGGAATCGTCTCCAATGTACATCTTCTACCCGCTGGCGCCGTACCG
CATGAAAATGGTGCAGCCCCACGCCAGGCTTGTGGTCATTCTCAAAGACC
CCACGGCAAGGTACTTTTCGCACGCCCGGATGACGATGTGCGGAAAGATC
GACGAGTCCAAACCGAAAACATCCGTGAACTTCCGCCTACAAGAGTTTCA
TGCTCCCGGGCGAGCAGCTGGATACCTCAATCGGGGCACACACAAGGTCG
AGAGGTATGCACCACTCTGCCGCGGGGTGAACGCGGAGCCGGGCGATCTT
GCGAAATGCTTCATAGCGACAAACGGGCAGAACCCGTTGTTGAGGGGACT
GTACGCAGACCAGCTGGAGCGATGGTTCGCGGCGTTTCCTCGATCACAGA
TACTCGTGATCGACTCTTCGGAGCTGTATCGTGACTTCCTCCCAACGCTG
GAGAGGGCTGCAAGGCACTTGGGGCTGCCGCCACACGACTTCTACTACGA
CTCCGACTTCCAACACAGCACCGGCGCGTGCAAGGACAACCGCCCCCAGT
TCTTCGGAGACGATGGGAGGTACAAGAAGATGCTTGAGCAGGAGCAACTT
TTCCGAGACTGGTATAGGCCTTACAACGAACGCCTCTACTCCCTCATCGG
CAAAGATTTAAAGTGGGACTAG
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