mRNA_Ecto-sp13_S_contig11211.1071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11211.1071.1
Unique NamemRNA_Ecto-sp13_S_contig11211.1071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: D8LML3_ECTSI (Imidazole glycerol phosphate synthase hisHF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML3_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 4.460e-72
Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 RGGELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVK 342
            RGGELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLK+K+SDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVK
Sbjct:  406 RGGELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKVKESDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVK 519          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: A0A835ZC23_9STRA (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC23_9STRA)

HSP 1 Score: 167 bits (423), Expect = 8.070e-47
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = 1
Query:   10 ELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVK 342
            +L+G S+IEQIS VYG+QAVV+SVDPRRVYVA+PE+AP HT L +  +   GP GQ+Y WYQCTV+GGREG+D+DAV L ++CE LGAGEILLNC+DMDGQK GFDL LVK
Sbjct:  380 QLSGTSAIEQISKVYGRQAVVISVDPRRVYVASPEEAPTHTCLHLPHAP--GPEGQQYAWYQCTVRGGREGRDVDAVQLVRACEALGAGEILLNCIDMDGQKQGFDLALVK 488          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: A0A2G6FD88_9DELT (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Desulfobulbus propionicus TaxID=894 RepID=A0A2G6FD88_9DELT)

HSP 1 Score: 164 bits (415), Expect = 6.500e-46
Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    7 GELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELV 339
            G  TG SSIEQI+ VYG QAVV+SVDPRRVYV  PEDAPKHTV+K       GP G+ YCWYQCT+KGGREG+D+DAV+LAK CE LGAGEILLNC+D DG   GFD+EL+
Sbjct:  354 GRATGLSSIEQIARVYGNQAVVISVDPRRVYVNAPEDAPKHTVMKTAIP---GPNGEEYCWYQCTIKGGREGRDLDAVTLAKVCEELGAGEILLNCIDRDGTNSGFDIELI 461          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: A0A448ZSD3_9STRA (Imidazole glycerol-phosphate synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSD3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.190e-45
Identity = 73/114 (64.04%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 RGGELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVK 342
            R GE TG+SSIE ISHVYG QAVV+S+DP+RVYVA+ +DA K  V+   D    GP G+++CW+QCTVKGGRE +DI AV++AK+C+TLGAGEI+LNC+DMDGQ +GFDL L++
Sbjct:  151 RNGEKTGESSIETISHVYGAQAVVISIDPKRVYVASKDDADKKHVVVELDDGSSGPNGEKFCWFQCTVKGGREERDICAVTVAKACQTLGAGEIMLNCIDMDGQGNGFDLPLMR 264          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: A0A7C2TKD1_9DELT (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Desulfurivibrio alkaliphilus TaxID=427923 RepID=A0A7C2TKD1_9DELT)

HSP 1 Score: 162 bits (411), Expect = 3.380e-45
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 RGGELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVKV 345
            RG +  G SSIEQI+HVYG QAVV+S+DPRRVYV +P DAPKH V+        GP G+ YCWYQCTVKGGREG+DIDA +LA++CE LGAGEILLNC+D DG   GFDLEL+++
Sbjct:  374 RGRQKGGKSSIEQIAHVYGNQAVVISIDPRRVYVTSPTDAPKHRVIPTAFP---GPNGEEYCWYQCTVKGGREGRDIDAATLAQACEELGAGEILLNCIDKDGTNSGFDLELIRL 485          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: A0A8K1CIM2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIM2_PYTOL)

HSP 1 Score: 160 bits (405), Expect = 2.570e-44
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 1
Query:   16 TGDSSIEQISHVYGKQAVVVSVDPRRVYVAN--PEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVKV 345
            +GDSSIEQIS VYGKQAVVVS+DPRRVYVA+   E A  H+V+K+    K GP G+ YCWYQ TVKGGRE +DIDAV +AK+CE LGAGEILLNCVDMDGQKDG+DL+L+++
Sbjct:  378 SGDSSIEQISAVYGKQAVVVSLDPRRVYVASFHDESAQNHSVVKLS---KPGPNGEEYCWYQATVKGGREARDIDAVGVAKACEALGAGEILLNCVDMDGQKDGYDLDLIRL 486          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: I5AYU9_9DELT (Imidazole glycerol phosphate synthase subunit HisH n=7 Tax=Desulfobacter TaxID=2289 RepID=I5AYU9_9DELT)

HSP 1 Score: 160 bits (404), Expect = 2.750e-44
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    7 GELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVKVTDSS 357
            G+ T  S+IE+IS VYG QAVV+SVDP+R +VA+PEDAPKH V+K+   +KG P G+ YCWYQCTV GGR+  DIDAV+LAK+CE LGAGEILLNC+D DG K GFDL+L+    S+
Sbjct:  356 GQKTKRSAIEEISRVYGAQAVVISVDPKRAWVASPEDAPKHHVVKVTSGEKG-PNGEVYCWYQCTVSGGRKAMDIDAVALAKACEALGAGEILLNCIDKDGTKSGFDLDLINAVRSN 471          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: UPI001FF5FE62 (imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Desulfatitalea sp. M08but TaxID=2929485 RepID=UPI001FF5FE62)

HSP 1 Score: 159 bits (401), Expect = 6.860e-44
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    7 GELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELV 339
            G  TGDS+IEQIS VYG QAVV+S+DPRRVYVA P++ P H +         GP G+RYCWYQCTVKGGREG+ IDAV+LA+ C+ LGAGEILLNC+D DG +DGFD+EL+
Sbjct:  354 GRATGDSAIEQISRVYGSQAVVISIDPRRVYVATPDEVPHHVLQTAIP----GPRGERYCWYQCTVKGGREGRPIDAVTLARVCQQLGAGEILLNCIDRDGTRDGFDIELI 460          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: A0A7S3XYZ3_HETAK (Imidazole glycerol phosphate synthase hisHF n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYZ3_HETAK)

HSP 1 Score: 159 bits (403), Expect = 8.010e-44
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 1
Query:    7 GELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELVK 342
            G   G SSIEQISHVYG QAVVVS+DPRRVYV  P DAPKHTV ++      GP G+R+CWYQ TVKGGREG+D+DAV+LAK+C+ LGAGEILLNCVD DGQ +G+DL L K
Sbjct:  409 GAPQGGSSIEQISHVYGAQAVVVSIDPRRVYVDGPGDAPKHTVFELPAP--AGPEGKRFCWYQATVKGGREGRDLDAVALAKACQALGAGEILLNCVDSDGQCNGYDLILTK 518          
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Match: A0A3D6BXW0_9DELT (Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3D6BXW0_9DELT)

HSP 1 Score: 158 bits (400), Expect = 1.020e-43
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    7 GELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKDSDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVDMDGQKDGFDLELV 339
            GE TG S+IEQIS  YG QAVV+S+DP+RV+V  PEDAPKH V+   ++   GP GQRYCWYQCTVKGGRE +DIDAV+LAK+CE LGAGEILLNC+D DG   GF LEL+
Sbjct:  356 GEKTGKSAIEQISLKYGAQAVVISIDPQRVWVTAPEDAPKHHVMASPET---GPEGQRYCWYQCTVKGGREARDIDAVALAKACEALGAGEILLNCIDKDGTNSGFALELI 463          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11211.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML3_ECTSI4.460e-7298.25Imidazole glycerol phosphate synthase hisHF n=2 Ta... [more]
A0A835ZC23_9STRA8.070e-4770.27Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
A0A2G6FD88_9DELT6.500e-4670.27Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A448ZSD3_9STRA1.190e-4564.04Imidazole glycerol-phosphate synthase n=1 Tax=Pseu... [more]
A0A7C2TKD1_9DELT3.380e-4566.09Imidazole glycerol phosphate synthase subunit HisH... [more]
A0A8K1CIM2_PYTOL2.570e-4470.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
I5AYU9_9DELT2.750e-4464.10Imidazole glycerol phosphate synthase subunit HisH... [more]
UPI001FF5FE626.860e-4465.77imidazole glycerol phosphate synthase subunit HisF... [more]
A0A7S3XYZ3_HETAK8.010e-4469.64Imidazole glycerol phosphate synthase hisHF n=1 Ta... [more]
A0A3D6BXW0_9DELT1.020e-4368.47Imidazole glycerol phosphate synthase subunit HisH... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11211contigEcto-sp13_S_contig11211:4199..5508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score235.3
Seed ortholog evalue1.4e-59
Seed eggNOG ortholog2880.D8LML3
Preferred nameHIS7
Model size357
KEGG rclassRC00010,RC00074,RC01190,RC01943
KEGG koko:K01493,ko:K01663
KEGG ReactionR01663,R04558
KEGG Pathwayko00240,ko00340,ko01100,ko01110,ko01230,map00240,map00340,map01100,map01110,map01230
KEGG ModuleM00026,M00429
Hectar predicted targeting categoryother localisation
GOsGO:0000105,GO:0000107,GO:0003674,GO:0003824,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0016810,GO:0016811,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons3
EggNOG free text desc.imidazoleglycerol-phosphate synthase activity
EggNOG OGsCOG0107@1,KOG0623@2759
EC3.5.4.12
Cds size357
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462584.6425147-CDS-Ecto-sp13_S_contig11211:4198..43031681462584.6425147-CDS-Ecto-sp13_S_contig11211:4198..4303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11211 4199..4303 -
1681462584.654982-CDS-Ecto-sp13_S_contig11211:4693..48521681462584.654982-CDS-Ecto-sp13_S_contig11211:4693..4852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11211 4694..4852 -
1681462584.6653879-CDS-Ecto-sp13_S_contig11211:5415..55081681462584.6653879-CDS-Ecto-sp13_S_contig11211:5415..5508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11211 5416..5508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11211.1071.1prot_Ecto-sp13_S_contig11211.1071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11211 4199..5508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11211.1071.1

>prot_Ecto-sp13_S_contig11211.1071.1 ID=prot_Ecto-sp13_S_contig11211.1071.1|Name=mRNA_Ecto-sp13_S_contig11211.1071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
RGGELTGDSSIEQISHVYGKQAVVVSVDPRRVYVANPEDAPKHTVLKIKD
SDKGGPMGQRYCWYQCTVKGGREGKDIDAVSLAKSCETLGAGEILLNCVD
MDGQKDGFDLELVKVTDSS
back to top

mRNA from alignment at Ecto-sp13_S_contig11211:4199..5508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11211.1071.1 ID=mRNA_Ecto-sp13_S_contig11211.1071.1|Name=mRNA_Ecto-sp13_S_contig11211.1071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1310bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11211:4199..5508- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGTGGTGAGTTGACCGGCGACAGCTCGATAGAGCAGATCTCCCACGT CTACGGAAAGCAGGCCGTCGTGGTTTCGGTGGACCCCAGGAGGGTGAGCA GGACAACACAGGGTCCCTAAATAGTGGGGTGTAGTCCCCCAATAGTGGTT TGTGGTCCTTCATTTATAGCGGGGTGTATTACCCTCAAAAGTGGGGTGTG CTCCAGTGTAGAGTGACGACCGGGATCAGCCCCGCACTGCTGTTCAGTAT CTGCCCCGTGGGTATGTTGCGAGTTTTCGTCTCTCTGTTGAAGAAGTGTA AAATACTGCTGCGTGGATTTCCTCCTGTTCATGCCGGCTGATCCGCCCTG ACCTGCAGAATAAACCGGAATAGGCAGGCGGGCGTGCAGCAGCACGCCTG GTCTGTGTGCCACCGACACCTTGAGGGACCAGGGTGGTGTGCAGGGTGTT GTTGAATAAAAGCCGTCTCGATATCTCGTTTGTTTCGCGTGCACTTTTGG GAGATAGATAGCCCAGTGTCTTGTGTCTCCTGTCTTCGGCAGATACGTTG TCGCAGCCCCAAAAACGTCCAAGCCTTGGTATTGTCTCTGAGCGCTCTCG TTCCGTGAGGCCAAAAAATAGCAAACAACTGCGCATCGTCTTTGGGTTTT GTCCAGGTGTACGTCGCTAACCCGGAGGACGCGCCGAAGCACACGGTTCT CAAGATCAAGGACTCGGACAAGGGGGGTCCAATGGGACAGAGGTACTGCT GGTACCAGTGCACTGTCAAGGGGGGAAGGGAAGGCAAGGATATCGACGCT GTCTCGCTCGCCAAGGTATGGTGTATGGCATGCTGTGGTATGGTATGGTG CGCGTTGTGTACTGTCTGTCTGTTTGAGGCTCGGGCCGCCATAAACGCTC GTGCGTGTTTTTCGTCCCATCTCTTGCGGTTGCACCGCCTGGGGCAGTCA CAACGTATGTATTTTTTCTTTTTGTGGCATGTTTTAAGTGTAGTAGCTGC TGCTGCTGCTGCTGCCGTCGGTCAGGGTGTTTCAGGTAGTGACAATAGAG AGAAGGCCGTATTAGAGTAGATTTTATTCTTGCTTGCCTTCTCACCATGT TCGACATCTCTCCACGTTCTGTTCATTTGTGCAACGTGCTGTTGATGCGC GACACGTTCCGCGGGTCACCCTCTGCTGGAACGGACCATGGCTTTCGGAG AGCAGAGCTGCGAGACACTCGGAGCGGGAGAAATTCTGCTGAACTGCGTC GACATGGACGGCCAGAAGGACGGCTTCGACCTGGAGCTGGTCAAGGTAAC CGATTCCTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11211:4199..5508-

>mRNA_Ecto-sp13_S_contig11211.1071.1 ID=mRNA_Ecto-sp13_S_contig11211.1071.1|Name=mRNA_Ecto-sp13_S_contig11211.1071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11211:4199..5508- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGTGGTGAGTTGACCGGCGACAGCTCGATAGAGCAGATCTCCCACGT
CTACGGAAAGCAGGCCGTCGTGGTTTCGGTGGACCCCAGGAGGGTGTACG
TCGCTAACCCGGAGGACGCGCCGAAGCACACGGTTCTCAAGATCAAGGAC
TCGGACAAGGGGGGTCCAATGGGACAGAGGTACTGCTGGTACCAGTGCAC
TGTCAAGGGGGGAAGGGAAGGCAAGGATATCGACGCTGTCTCGCTCGCCA
AGAGCTGCGAGACACTCGGAGCGGGAGAAATTCTGCTGAACTGCGTCGAC
ATGGACGGCCAGAAGGACGGCTTCGACCTGGAGCTGGTCAAGGTAACCGA
TTCCTCG
back to top