mRNA_Ecto-sp13_S_contig10077.105.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10077.105.1
Unique NamemRNA_Ecto-sp13_S_contig10077.105.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10077.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10077contigEcto-sp13_S_contig10077:2219..2402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size184
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_000150.1
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.848067-UTR-Ecto-sp13_S_contig10077:2218..22221681462505.848067-UTR-Ecto-sp13_S_contig10077:2218..2222Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10077 2219..2222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.8621433-CDS-Ecto-sp13_S_contig10077:2222..24021681462505.8621433-CDS-Ecto-sp13_S_contig10077:2222..2402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10077 2223..2402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10077.105.1prot_Ecto-sp13_S_contig10077.105.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10077 2223..2402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10077.105.1

>prot_Ecto-sp13_S_contig10077.105.1 ID=prot_Ecto-sp13_S_contig10077.105.1|Name=mRNA_Ecto-sp13_S_contig10077.105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
RQPLALVRSSDFRSCDFAFNFASLTRLPSFQKLTVGAHPDSVLCSTNPPR
GTLRPLHTI*
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mRNA from alignment at Ecto-sp13_S_contig10077:2219..2402-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10077.105.1 ID=mRNA_Ecto-sp13_S_contig10077.105.1|Name=mRNA_Ecto-sp13_S_contig10077.105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=184bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10077:2219..2402- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCAACCGTTAGCACTCGTACGCTCAAGTGATTTCAGGAGCTGTGATTT
TGCTTTCAACTTTGCATCCTTGACCCGTCTACCTTCGTTTCAAAAACTCA
CCGTGGGGGCGCATCCTGACTCAGTCCTATGTTCAACAAACCCACCAAGG
GGCACTCTGCGGCCTCTTCATACAATCTGACAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10077:2219..2402-

>mRNA_Ecto-sp13_S_contig10077.105.1 ID=mRNA_Ecto-sp13_S_contig10077.105.1|Name=mRNA_Ecto-sp13_S_contig10077.105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10077:2219..2402- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCAACCGTTAGCACTCGTACGCTCAAGTGATTTCAGGAGCTGTGATTT
TGCTTTCAACTTTGCATCCTTGACCCGTCTACCTTCGTTTCAAAAACTCA
CCGTGGGGGCGCATCCTGACTCAGTCCTATGTTCAACAAACCCACCAAGG
GGCACTCTGCGGCCTCTTCATACAATCTGA
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