mRNA_Ecto-sp13_S_contig10074.102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10074.102.1
Unique NamemRNA_Ecto-sp13_S_contig10074.102.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10074.102.1 vs. uniprot
Match: A0A6H5L876_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L876_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.290e-55
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 3 
Query:  246 SNSLVMVVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGFVSNATYRAVDAN 530
            SNSLVM+VPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNG VSNATYRAVDAN
Sbjct: 1095 SNSLVMLVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGRVCRGDFSHAAAVLSLSFRDDNGVVSNATYRAVDAN 1189
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BLAST of mRNA_Ecto-sp13_S_contig10074.102.1 vs. uniprot
Match: D7G7M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.110e-31
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 3 
Query:  261 MVVPCQDAAVEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNGR-VC 431
            MVVPCQDAA+EPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYN   VC
Sbjct:    1 MVVPCQDAAMEPGTTMLDWRFGSAPDETKLGYSMQFFPEQEDCGETSVEWNYNAMAVC 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10074.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L876_9PHAE2.290e-5597.89Integrase catalytic domain-containing protein n=1 ... [more]
D7G7M7_ECTSI1.110e-3193.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10074contigEcto-sp13_S_contig10074:731..3030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size535
Hectar predicted targeting categorysignal peptide
Exons4
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.6178381-CDS-Ecto-sp13_S_contig10074:730..9771681462505.6178381-CDS-Ecto-sp13_S_contig10074:730..977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10074 731..977 +
1681462505.6263213-CDS-Ecto-sp13_S_contig10074:1240..12971681462505.6263213-CDS-Ecto-sp13_S_contig10074:1240..1297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10074 1241..1297 +
1681462505.6341095-CDS-Ecto-sp13_S_contig10074:2168..22841681462505.6341095-CDS-Ecto-sp13_S_contig10074:2168..2284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10074 2169..2284 +
1681462505.6465619-CDS-Ecto-sp13_S_contig10074:2917..30281681462505.6465619-CDS-Ecto-sp13_S_contig10074:2917..3028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10074 2918..3028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10074.102.1prot_Ecto-sp13_S_contig10074.102.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10074 731..3028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10074.102.1

>prot_Ecto-sp13_S_contig10074.102.1 ID=prot_Ecto-sp13_S_contig10074.102.1|Name=mRNA_Ecto-sp13_S_contig10074.102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
VYFTAGWGVFLCVTNRSYGVTVDGAIGSAIGSTEVSARKQATHFAVRSEM
VEKRLWSTIYSTNRMVRSASAQEVHKTASSHGAIRWSWWCPVRMLPWSRE
LRCWTGASVAPRTKPSLATVCSSSRSRRIVGRPAWSGTTTAECVGETSAM
QPRCCRYRSGTTMVLSATPPTGPWMLT
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mRNA from alignment at Ecto-sp13_S_contig10074:731..3030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10074.102.1 ID=mRNA_Ecto-sp13_S_contig10074.102.1|Name=mRNA_Ecto-sp13_S_contig10074.102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10074:731..3030+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATATTTTACAGCTGGTTGGGGTGTTTTTTTGTGTGTTACCAACCGCTC
CTACGGGGTGACCGTTGACGGCGCCATTGGCAGCGCCATTGGCAGCACTG
AAGTATCAGCGAGGAAACAAGCAACACATTTTGCTGTTCGGAGTGAAATG
GTGGAGAAACGCCTTTGGAGTACAATTTACAGCACCAACCGTATGGTTCG
TTCCGCATCCGCACAAGAGGTGCACAAAACGGCAAGCTCGCACGGAGGTG
CGTAGAAGAAGGGGTAAAGGCGGCGATGTTCGATGCGCGCTGCCGCGCAC
CATGCCTCGCGCGCGGACGGAGAGTTGGCGTTGACGTGAGAAAAAATGCC
GAGAACGAAATGTTTTTTATTAACGACCGATTCTCCCCATGCGAAGGGTT
GTCTCAGTCAGTCACGACATACGCTTGTTTCGCATCTTGCCATCTCCTTT
TGGCGGGTGGGTGATGTGATGCGACTCTCTGTGCTCGGCTCGGCCGCGCG
TCTGGTGCAGCAATTCGCTGGTCATGGTGGTGCCCTGTCAGGATGCTGCC
GTGGAGCCGGGAACTACGTAAGTTTGGTTTTGAGAAAGCTGTTCCTTCAG
GTTTCCTTCTTTTCTTCTCTCGTGTTCAAGGGTCCTTATCGATGTGTTGT
TCTCGTCCACCTCCACTCCGCCGTCTGTGCCCATCGTGTGTAGGTGTCAC
GAGGTACCATACCCAGCTACCCCTGCAAATCAACCGTGCAGACCTGCGGC
TCACGATCATATCAAGCGAAAGGGCGAAAACGTTCTCCACCTACCACCCT
ACAGAGTTCCTCATCGAATGCCACTTGCTTTTACGCGCACATGTCAGTAT
CGTATCTCGTGCCACCCACGGCGGCCGCCTGCCTAAGCACTAATAAGCTG
AATGTAGCTCCGATCTCGCTAGGCACAATTTCGCTCCTTTCGTGTTTTGG
TTAGAATCGTCGCGCCGTTGTCGCTACCACTCCCAGATTTGTGCCTAACC
GGCAGTCTTTGTTCCTTCTCTCCACTGAGCTCTTCCGCTGCGGTAAATGT
CGTTTGTCCTTGACGACGTCACGGCAACTCGCCACGTACATATCGTACTG
CGTTTGTTGAGCACCCCAAGACATCACGAAACGAATGGGGTCACAGGAGC
AATGGGATTTCTGAGCCGTGGGAACACGGAGTGTTTTTCGTCGCCCCCTC
CCTCTCCGATGCGTGAAACGACCGTTCGGTGTTACGTTCCTTGAAACGAC
ACCACGAAGGGAACCTGCGTGCAAGAGCTTTTTCTTTCACGTCGATGATT
TTTCCCTGTTTTCTTCCGTTTTGGCTGTGTTTGACTTCCTGGGGAAAATG
TTTGTCGCCCCGTGCTATTTCCTTTTTGTTGCATGTTCTGTTCACACGTG
TTTTCATGTTTGCTCTCGTGCGCTTGTACTATGTTTAGGATGTTGGACTG
GCGCTTCGGTAGCGCCCCGGACGAAACCAAGCTTGGCTACAGTATGCAGT
TCTTCCCGGAGCAGGAGGATTGTGGGGAGACCAGCGTGGAGTGGAACTAC
AACGGTGAGAGCTATCAAAGTGTAACTCTTGTACATGTTTTGCACTGCTT
CAGGATGCTGGGTATTCATGAGTGTTGTGGGCTGTGTCACCAGACACGAC
ACGTGCCAGCAAACGCACGAACATTACCGTGCGAGAGAGCGAGAGAGGCA
GGCGTTTTGCCAGTCTGCCTTTGGCCCAGACAGTTCAACATAGAATAAAA
CAAGGAAAGACGCCAGTGCGGAATGAAAAAAGCTAGAGTGCTTGTTGTCT
GCGGTTTCAGAAGACAGGTATGTCCGTTGTGTATGGGAGTACGAATTGGC
GTCGAATGCTGATCGTTTTGGTAGTCCATTGACGTGCATCGGTCACCATG
TCGCAAAACGGATCACAAGCATTACCGTGCCTGTGGATTTGGTGAGCCTC
GTGAAGACCCCCCGCGGAGCACTGACCATCTGACCGACGGAGATACACCT
AACTTTTGACTTGTGCGGCGGTATGACCAGCCGTCCCGCAGACCTCGCAT
GCATTGTGGCAGTACCTTTTTTTTTTCCATTTAGGGAGCTCCCGATCACC
ATCCTTGTCGCCACAACGAGAATTTATCTCAAACAATGCCACTCACCTAC
CATTGCTCCCAACCGTTACCTTTCGGGCCCTATCTAGGCCGAGTGTGTCG
GGGAGACTTCAGCCATGCAGCCGCGGTGTTGTCGCTATCGTTCCGGGACG
ACAATGGTTTTGTCAGCAACGCCACCTACCGGGCCGTGGATGCTAACAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10074:731..3030+

>mRNA_Ecto-sp13_S_contig10074.102.1 ID=mRNA_Ecto-sp13_S_contig10074.102.1|Name=mRNA_Ecto-sp13_S_contig10074.102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10074:731..3030+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATATTTTACAGCTGGTTGGGGTGTTTTTTTGTGTGTTACCAACCGCTC
CTACGGGGTGACCGTTGACGGCGCCATTGGCAGCGCCATTGGCAGCACTG
AAGTATCAGCGAGGAAACAAGCAACACATTTTGCTGTTCGGAGTGAAATG
GTGGAGAAACGCCTTTGGAGTACAATTTACAGCACCAACCGTATGGTTCG
TTCCGCATCCGCACAAGAGGTGCACAAAACGGCAAGCTCGCACGGAGCAA
TTCGCTGGTCATGGTGGTGCCCTGTCAGGATGCTGCCGTGGAGCCGGGAA
CTACGATGTTGGACTGGCGCTTCGGTAGCGCCCCGGACGAAACCAAGCTT
GGCTACAGTATGCAGTTCTTCCCGGAGCAGGAGGATTGTGGGGAGACCAG
CGTGGAGTGGAACTACAACGGCCGAGTGTGTCGGGGAGACTTCAGCCATG
CAGCCGCGGTGTTGTCGCTATCGTTCCGGGACGACAATGGTTTTGTCAGC
AACGCCACCTACCGGGCCGTGGATGCTAACA
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