mRNA_Ecto-sp13_S_contig1.8.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1.8.1
Unique NamemRNA_Ecto-sp13_S_contig1.8.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1contigEcto-sp13_S_contig1:60638..62662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size412
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462496.1399539-CDS-Ecto-sp13_S_contig1:60637..606841681462496.1399539-CDS-Ecto-sp13_S_contig1:60637..60684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 60638..60684 +
1681462496.3146217-CDS-Ecto-sp13_S_contig1:62299..625281681462496.3146217-CDS-Ecto-sp13_S_contig1:62299..62528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1 62300..62528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462496.4823825-UTR-Ecto-sp13_S_contig1:62528..626621681462496.4823825-UTR-Ecto-sp13_S_contig1:62528..62662Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1 62529..62662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1.8.1prot_Ecto-sp13_S_contig1.8.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1 60638..62528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1.8.1

>prot_Ecto-sp13_S_contig1.8.1 ID=prot_Ecto-sp13_S_contig1.8.1|Name=mRNA_Ecto-sp13_S_contig1.8.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
CTHRAPRSPHGVFAQSRTAVVLHVSAPSGVEASAGKNPRSKSRSRFLPPT
FPARCNTGVWDGDHRFGRHVVEKHFTHKRHIHVRCRKYCCW*
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mRNA from alignment at Ecto-sp13_S_contig1:60638..62662+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1.8.1 ID=mRNA_Ecto-sp13_S_contig1.8.1|Name=mRNA_Ecto-sp13_S_contig1.8.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2025bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:60638..62662+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACCCACCGCGCTCCTCGTTCCCCGCATGGGGTCTTTGCGCAAAGGTC
AGATAACCTCAGTGCCTCCCCTAACAGGAATGGCACCGACGACCTAGGTG
GCAGCAGATGTAGCCGCCCTTCTTTTCATCATCGCGAAGATACTACAACT
GCAGTAAATATAACATCATTGAGATGGACCGCAACAACAGACAGACGCAC
ATCAAACCCTCGTCTCTACATCGATTGTTGTATATAGGACTCCTCTCAAG
TTGAAAAGATCTTCACCGGAGTCAAGGTGATATTCGCCGTTGATGACGGC
GAAGGCGTTGCTACCCTACACCTTTCCGTGGCGCTCACAGAAGAACGGGA
AAGTTCAATCATGGACGAATACAAGCTGAGCCAGCCAAGAAGGTCACTTT
TGTTCTTTGGCGCCTCACGCTACCGTTTCAACGAATTTAGGCTTGAAAAT
TGGCAGCTGCTCGTACAAGACCACAGGGGAAACGCCGGTACCAGAATCTT
TTGAATCTGAGTTGATTTAGGTATTACACTATCAATTGACTACGCAATAC
CCGATACCTCTGGTACTGAAATCAGTATAAAAAAACGTTCTTCAGATAAA
TCTGAAATTTAAATTTGGTGTGCACGCACCTGAGAGCAGTGCGAGAGTGT
AGATGGTAGTTACAGGGCTCAATTCATATTTCATCACAAGTTATGGCCTC
GTAAAGATTCATATACAATAAACAATATAGCTGAGGGAATTTGTGGATAT
CGCTATTTACACCACGACTTTGACGAGTTGGAATCTGAAGTTTTGCAATT
GATGGATGGGTGTTAGTTAGTACAATCAAGACCTTGACTGGAAGCACCCT
CTATTTTTGTTTGTTTTAGTCCCCCCATACACATAAAAAGGATCGCCATT
TGTTCTTAAATAGGGCTACCTCGTGAATAATAAACTAAAAAGACAGTCAA
GGTCTTCGTTATACTAATACCGACCACATATCAAATTTTCAGGTTCTAAT
TCGTAGAAATCGTGGTGTAAGTCGTTTTCAACCATTTTGCATGCACCCTG
GCTGGCCCATCTTTAGTAGCATGTATGTGCTGGCAGCGCCGTTGCAGACC
CCTCGACCCCATGGCGGTTGCTTCTCTGATGGCCCTACACCACGAAGCGG
TGCATAACGCGGGGTTGCGGGAGAAAGGCTCTCTCCGCGCAATGGCCTAT
TGGCAGCATATGTTTGTTAGATGGACTTATCCACTTGACCACTTACTCGC
CCCCACCACGGAGATCACTTCACACTGCACGCACACCTGATGAGATGGGA
TCGGATCCCAACGGCGTATATTTTGGGATCCTTGGGATCCGATCCCATCT
CATCAGGTGTGTGTGCAGTGTGCAGTGATCTCCGGGGGAGCGCCCCCCCT
CGCCATACGCTACTGATTCCCTCTGTGGCGGCGGTCCTCCCGCGTGCTAG
TGCTGACGGTTCTCCCGCCTGCCATTCAACGCGCCCTTTCCCCACTCCCC
GGAACAAGGGCGTACTTGATGAGATTCGAACTCCCGGTGTATTTTTTGTT
CAATAATAGCTGAGTGGTCTAGTGGATAAGTCCACTTGGCGAACAGCATG
CATTCACCGTGGCTATCTTCATTCGATATTCACCGTGGCCACCTTTGTTC
GACCCCGTACAGCCGTACAGCTGTAGTCCTTCACGTCTCGGCTCCATCGG
GCGTGGAGGCGTCCGCAGGGAAGAATCCTCGCAGCAAATCCAGGTCGCGT
TTTCTGCCACCTACCTTTCCAGCACGATGCAACACAGGTGTATGGGACGG
CGATCACAGATTTGGACGGCACGTGGTTGAAAAACACTTCACCCATAAAC
GTCACATACATGTGAGATGCAGGAAGTATTGCTGCTGGTGAATAGCCTGC
GCCCGAGACGAGATCCCTGTCCTCCCCAAGATCGATCTGTCAACAGTGAT
GCTGACAGGACGTTGCCTCGATGATGAAGCACGGTACTCGACGCCGAGGG
GCGTCGAGCAAACCACAAAAAGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1:60638..62662+

>mRNA_Ecto-sp13_S_contig1.8.1 ID=mRNA_Ecto-sp13_S_contig1.8.1|Name=mRNA_Ecto-sp13_S_contig1.8.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1:60638..62662+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACCCACCGCGCTCCTCGTTCCCCGCATGGGGTCTTTGCGCAAAGCCG
TACAGCTGTAGTCCTTCACGTCTCGGCTCCATCGGGCGTGGAGGCGTCCG
CAGGGAAGAATCCTCGCAGCAAATCCAGGTCGCGTTTTCTGCCACCTACC
TTTCCAGCACGATGCAACACAGGTGTATGGGACGGCGATCACAGATTTGG
ACGGCACGTGGTTGAAAAACACTTCACCCATAAACGTCACATACATGTGA
GATGCAGGAAGTATTGCTGCTGGTGA
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