prot_Ecto-sp13_S_contig11105.966.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11105.966.1
Unique Nameprot_Ecto-sp13_S_contig11105.966.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length414
Homology
BLAST of mRNA_Ecto-sp13_S_contig11105.966.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 568 bits (1465), Expect = 7.230e-192
Identity = 350/414 (84.54%), Postives = 362/414 (87.44%), Query Frame = 0
Query:    1 AEVATRLEFVFPAVLRASFVLFSVTYSYSILAFDMYCATPLGVEPVDSVADHSMMQRWAFYKDVLSFASMHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAVSDSLSFSWRSHRDGGGRGGAEDGRGGSASPMSSSVKSISETKGASSIRTIGEIRGGGGGEASRSXXXXXXXXXXXXXXXXGRFYGDGAEGAASGGXVXXXXXXXXXXXXPKARAGGNDGASTTILDGSKFATFAGDAVDVDTLLEEGAHDHGGSXXXXXXXXXXXGGLDXXXXXXXXXXXXXPVLVTSHARSMSTTFWGAEQEKDHQRRGSSQASTEMQESLNRMEVENASLRALVDSMQMDLQMANARLYDEMQTKSRDR 414
            +EVATRLEFVFPAVLRASFVLFSVTYSYS+LAFDMYCATPLGVEPVDSVADHSMMQRWA+YKDV+SFAS+HQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAK+FFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAVSDSLSFS RSHRDGGGRGGAEDGRGGSASP+SS VKSI ET GASSIRTIGE+ G GGG +  +                GR YGDG EGAAS  X XXXXXXXXXXXX  ARAGG DGASTTILDGSKFATFAGDAVDVDTLLEEGA   GGS   XXXX    GGLDXXXXXXXXXXXXX       ARSMS+TFWGAEQEKDHQRRGSSQASTEMQESL+RME ENASLRALVDSMQMDLQMANARLYDEMQT SRDR
Sbjct:  563 SEVATRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVISFASLHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKLFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAVSDSLSFSRRSHRDGGGRGGAEDGRGGSASPLSSRVKSILETTGASSIRTIGEVGGVGGGASRLTRELGGGAGPAASLSSSGRSYGDGGEGAASXXXXXXXXXXXXXXXXXXARAGGKDGASTTILDGSKFATFAGDAVDVDTLLEEGARGDGGSDSGXXXXDGEGGGLDXXXXXXXXXXXXXXXXXXXXARSMSSTFWGAEQEKDHQRRGSSQASTEMQESLSRMEAENASLRALVDSMQMDLQMANARLYDEMQTPSRDR 976          
BLAST of mRNA_Ecto-sp13_S_contig11105.966.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 543 bits (1400), Expect = 1.270e-180
Identity = 311/417 (74.58%), Postives = 327/417 (78.42%), Query Frame = 0
Query:    1 AEVATRLEFVFPAVLRASFVLFSVTYSYSILAFDMYCATPLGVEPVDSVADHSMMQRWAFYKDVLSFASMHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAVSDSLSFSWRSHRDGGGRGGAEDGRGGSASPMSSSVKSISETKGASSIRTIGEI---RGGGGGEASRSXXXXXXXXXXXXXXXXGRFYGDGAEGAASGGXVXXXXXXXXXXXXPKARAGGNDGASTTILDGSKFATFAGDAVDVDTLLEEGAHDHGGSXXXXXXXXXXXGGLDXXXXXXXXXXXXXPVLVTSHARSMSTTFWGAEQEKDHQRRGSSQASTEMQESLNRMEVENASLRALVDSMQMDLQMANARLYDEMQTKSRDR 414
            +EVA RLEFVFPAVLRASFVLFSVTYSYS+LAFDMYCATPLGVEPVDSVADHSMMQRWA+YKDVLSFAS+HQSFAAMTD++MLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRA+  SLSFS RS RDGGGRGGAEDGRGG ASP+SS VKS+ ET GASSIRTIGE           ASRS                GR YGD        G V            PKAR  GNDGAST ILDGS+FAT AGDAVDVDTLLE+GAH +GGS            GLD             PV+VTSHARSMS+TFWGAEQEKDHQRRGS QASTEMQE+LNR+E ENASLRALVDSMQMDLQMANARLYDEMQTKSRDR
Sbjct:  696 SEVARRLEFVFPAVLRASFVLFSVTYSYSVLAFDMYCATPLGVEPVDSVADHSMMQRWAYYKDVLSFASLHQSFAAMTDIVMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAIPHSLSFSRRSPRDGGGRGGAEDGRGGPASPLSSRVKSVLETTGASSIRTIGETGXXXXXXXXXASRSTGELGGAGPAASPSSSGRSYGDXXXXXXXXGAVGDMAGSRSRKATPKARTVGNDGAST-ILDGSQFATLAGDAVDVDTLLEQGAHGYGGSDRGGEDGNGEDCGLDDDDGSFSSDESSAPVVVTSHARSMSSTFWGAEQEKDHQRRGSLQASTEMQENLNRVEAENASLRALVDSMQMDLQMANARLYDEMQTKSRDR 1111          
BLAST of mRNA_Ecto-sp13_S_contig11105.966.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.990e-47
Identity = 86/135 (63.70%), Postives = 116/135 (85.93%), Query Frame = 0
Query:    1 AEVATRLEFVFPAVLRASFVLFSVTYSYSILAFDMYCATPLGVEPVDSVADHSMMQRWAFYKDVLSFASMHQSFAAMTDVIMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIP 135
            ++VATRLEFVFPAV+RASFVLF++TY+Y+++A+ MYC+TPLG EP+  + D SM++R+A  K+V +FA++ +S+A+M  V+M SNWP+FMDAAG VGN+V AK+FFYSFK + FYFVMPV+LGFIV SYM AH+P
Sbjct:  208 SDVATRLEFVFPAVIRASFVLFALTYTYAVVAYAMYCSTPLGGEPIGDLKDDSMVKRFAAVKEVANFATLPRSYASMMYVVMFSNWPMFMDAAGVVGNLVVAKVFFYSFKAIGFYFVMPVLLGFIVTSYMNAHVP 342          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11105.966.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR41_ECTSI7.230e-19284.54Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5L0T6_9PHAE1.270e-18074.58Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FGS1_ECTSI1.990e-4763.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 375..395
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..63
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 85..103
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..126
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 127..414
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..84
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 104..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11105contigEcto-sp13_S_contig11105:3..5463 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11105.966.1mRNA_Ecto-sp13_S_contig11105.966.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11105 3..5463 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11105.966.1 ID=prot_Ecto-sp13_S_contig11105.966.1|Name=mRNA_Ecto-sp13_S_contig11105.966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=414bp
AEVATRLEFVFPAVLRASFVLFSVTYSYSILAFDMYCATPLGVEPVDSVA
DHSMMQRWAFYKDVLSFASMHQSFAAMTDVIMLSNWPLFMDAAGDVGNVV
TAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSS
RAVSDSLSFSWRSHRDGGGRGGAEDGRGGSASPMSSSVKSISETKGASSI
RTIGEIRGGGGGEASRSTGELGGAGPAASRSSSGRFYGDGAEGAASGGAV
GDMAGSRSGKASPKARAGGNDGASTTILDGSKFATFAGDAVDVDTLLEEG
AHDHGGSDGGGEDRNGEDGGLDDDDGSSSSDDSSAPVLVTSHARSMSTTF
WGAEQEKDHQRRGSSQASTEMQESLNRMEVENASLRALVDSMQMDLQMAN
ARLYDEMQTKSRDR
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