mRNA_Ecto-sp13_S_contig11103.962.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11103.962.1
Unique NamemRNA_Ecto-sp13_S_contig11103.962.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11103.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11103contigEcto-sp13_S_contig11103:1691..3418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size478
Hectar predicted targeting categoryother localisation
Exons4
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462576.2950854-CDS-Ecto-sp13_S_contig11103:1690..17351681462576.2950854-CDS-Ecto-sp13_S_contig11103:1690..1735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11103 1691..1735 +
1681462576.305054-CDS-Ecto-sp13_S_contig11103:1996..21691681462576.305054-CDS-Ecto-sp13_S_contig11103:1996..2169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11103 1997..2169 +
1681462576.3139865-CDS-Ecto-sp13_S_contig11103:2516..26931681462576.3139865-CDS-Ecto-sp13_S_contig11103:2516..2693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11103 2517..2693 +
1681462576.3223019-CDS-Ecto-sp13_S_contig11103:3336..34181681462576.3223019-CDS-Ecto-sp13_S_contig11103:3336..3418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11103 3337..3418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11103.962.1prot_Ecto-sp13_S_contig11103.962.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11103 1691..3418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11103.962.1

>prot_Ecto-sp13_S_contig11103.962.1 ID=prot_Ecto-sp13_S_contig11103.962.1|Name=mRNA_Ecto-sp13_S_contig11103.962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
VSGELRAERAARLEEERKIGGELEGAREEAKGLQERVNGLETMKKGTEEE
LEAAKETLRAAQQASDSEMGRLRDELQSKTTEVEALAEKSAAASGESEKE
LNRLREEAETERSQAERALSAKEEETVVLESSLRKLEAEQAAQAKELELA
TSLRNEAVE
back to top

mRNA from alignment at Ecto-sp13_S_contig11103:1691..3418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11103.962.1 ID=mRNA_Ecto-sp13_S_contig11103.962.1|Name=mRNA_Ecto-sp13_S_contig11103.962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11103:1691..3418+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCCGGGGAGCTTAGGGCTGAGAGGGCTGCTAGGCTTGAGGAGGTGGG
TGGGGCGGAGCGTGTTTTGTTGTGGACATTGGCGTCGTTGGCTTTGTCTC
TCTCTCTCTTTTTCTTTTCTGCCTCCGGCGGTACGGCTGCCAAGCGGAAC
GTCAGTCGCCCGTGGTAGCCGCGGAAATCTAGTTGGAGTGACGGAGGAAT
TCCGAATCTTTCATTCCATGCCCTTCTGGAAACGGGAGCGATTTGTTTTA
AGTAGCCCGCATGAAGACTGCTGCTCACGTGAACCTTACCTCTTACCGCA
CCCCAGGAGAGGAAGATCGGCGGAGAGCTAGAGGGGGCGAGGGAAGAGGC
GAAGGGTTTGCAGGAGAGGGTGAATGGCCTGGAGACCATGAAGAAGGGGA
CGGAGGAAGAGTTGGAGGCCGCGAAGGAAACGCTGAGAGCGGCGCAGCAA
GCCTCGGACTCGGAGATGGGCCGTCTGAGGTGATGCTTACTGTGTATCCC
TGTTCGATTTTGGTGGTTGTGGATGTGCCCGTTTTGGGTAAGTGTGCATG
AGTGTTTCAGAGTGACTGCCGTGTTCAAATCCGAAAACGTTCCACCCCCC
CCCCCCCCCCAGTTCCCAGCCGAGATGCCCAGACGAGAGTTTGTTACATT
GTAACTTCTTTTTTCTTGTTGCCGCTATCTTGCAGCATCCGGTGAGCTGT
CGATTCCCTCTCTGGCTCATCCGTATTTAGCGCCGTGACGCGTTTCTCAA
ATCCGAGCGGACATGATCGACACACAGAATATGAATCTTTACTCCCGCTC
CCCGCGCGTGCTGGCGCCGCTGTCAGGGATGAGCTGCAGTCCAAGACAAC
GGAGGTGGAAGCTCTCGCGGAGAAGAGCGCGGCTGCCTCTGGCGAGTCGG
AGAAGGAGCTCAACCGCCTACGGGAGGAAGCGGAGACGGAACGATCGCAG
GCCGAGCGTGCGCTGTCCGCTAAGGAGGAGGAAACGGTCGTTCTCGAATC
CAGGTACTCACCAATTTCTCTTTTTCATCAATGTTTGGACACTCGTGGCT
TTTTCTCCGTGATGAGTGTCTTAATCGCGGTAAGATTTCCAAAATTTTTC
ATGCAAACACAGACCGACCGTACCCGTTCGGGATGATACCACAGTCTAAC
GGGATTTGCTGGAGTTTTTTGCAATGGGTGGAGAAGAACATGTGCTTTTA
TGTACTCCCTCCGCGTATGTGTGCATTCTGCAAGTCACCGTGCTCCTAGA
AATCTGGTATCCTAATGTAATGAGAATTGTCCTTGAAGCGGGGACGAGTG
TACACTTGTCAAGGGCACCAACGCCCAACCGGGCCTGTTCAACAAAATAT
CAGCGTTTTCGTCGGTGGATGGATTCTTGTTTCGAACGCTATTGGGAACG
ATAACGCACTAGGACCTAACGATGCTTGCACTTGGCCCACCGCAGGGTTG
TGACGATGTCCTGTTCCTAGGCACCAGAGTGGGCTCGGCATCGCTAATAT
TGACGGTATACGGGTCGAACCGAAACCACGTACGGGTCGTTGGTTGTGGG
TGACCTTCCGAGTGGGCTTAAATCTTCACAAGCGCCCGCCTGTCGCCCCA
ACGCTGGCCGTGAATTTCCGCGTGTTCGTACCGTGTGCGCGAACAGTCTG
CGCAAGCTCGAGGCGGAACAAGCCGCTCAGGCGAAGGAGCTCGAGCTCGC
TACCTCCCTGAGGAATGAGGCGGTCGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11103:1691..3418+

>mRNA_Ecto-sp13_S_contig11103.962.1 ID=mRNA_Ecto-sp13_S_contig11103.962.1|Name=mRNA_Ecto-sp13_S_contig11103.962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11103:1691..3418+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCCGGGGAGCTTAGGGCTGAGAGGGCTGCTAGGCTTGAGGAGGAGAG
GAAGATCGGCGGAGAGCTAGAGGGGGCGAGGGAAGAGGCGAAGGGTTTGC
AGGAGAGGGTGAATGGCCTGGAGACCATGAAGAAGGGGACGGAGGAAGAG
TTGGAGGCCGCGAAGGAAACGCTGAGAGCGGCGCAGCAAGCCTCGGACTC
GGAGATGGGCCGTCTGAGGGATGAGCTGCAGTCCAAGACAACGGAGGTGG
AAGCTCTCGCGGAGAAGAGCGCGGCTGCCTCTGGCGAGTCGGAGAAGGAG
CTCAACCGCCTACGGGAGGAAGCGGAGACGGAACGATCGCAGGCCGAGCG
TGCGCTGTCCGCTAAGGAGGAGGAAACGGTCGTTCTCGAATCCAGTCTGC
GCAAGCTCGAGGCGGAACAAGCCGCTCAGGCGAAGGAGCTCGAGCTCGCT
ACCTCCCTGAGGAATGAGGCGGTCGAG
back to top