mRNA_Ecto-sp13_S_contig10070.95.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10070.95.1
Unique NamemRNA_Ecto-sp13_S_contig10070.95.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: D7G4M7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M7_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.590e-40
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 1
Query:   19 SFFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVADRYAL 255
            +FF +FGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDY+LFWPEKAEFVR AVAS AIIVPFSAIGVADRYAL
Sbjct:  612 TFFTKFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYKLFWPEKAEFVRLAVASDAIIVPFSAIGVADRYAL 690          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: D7G6D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.610e-28
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   31 QFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVADR 246
            + GAVPV+PRNM RL K G+++LL+PGG  EA H+KG+DYQLFWPEK EFVR A +  A IVPF+A+G ADR
Sbjct:    3 KLGAVPVTPRNMLRLFKAGESMLLYPGGAKEALHQKGQDYQLFWPEKGEFVRMAASFNATIVPFAAVGSADR 74          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: A0A2P6V1X8_9CHLO (Acyltransferase chloroplastic n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1X8_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 7.390e-25
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   22 FFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVAD 243
            F   FGAVPVS  NM+RLL  G+ VLLFPGGV EAY R+GEDYQLFWPEK+EF+R A   GA IVPF+A+GV D
Sbjct:  605 FMTTFGAVPVSGFNMHRLLASGEAVLLFPGGVREAYKRRGEDYQLFWPEKSEFIRMAARFGATIVPFAAVGVDD 678          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: E1Z887_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z887_CHLVA)

HSP 1 Score: 105 bits (262), Expect = 1.380e-24
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   22 FFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVAD 243
            F   FGAVPVS  NM+RLL+ G++VLLFPGGV EAY R+GE+Y+LFWPEK+EF+R A   GA IVPF+A+GV D
Sbjct:  616 FMTTFGAVPVSAFNMHRLLQAGESVLLFPGGVREAYKRRGEEYRLFWPEKSEFIRMAARFGATIVPFAAVGVDD 689          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: A0A7S0GWF7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GWF7_MICPS)

HSP 1 Score: 102 bits (254), Expect = 1.420e-24
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   16 VSFFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVADRY 249
            +S F +FGAVPVS +N+Y+LL  G+ VLLFPGGV EA+ RKGE Y LFWP K EFVR A   GA+IVPF+A+G  D +
Sbjct:   79 LSQFSRFGAVPVSGKNLYKLLAAGECVLLFPGGVREAFKRKGEKYALFWPSKPEFVRMAARHGAVIVPFAAVGAEDGF 156          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: A0A2P6TRL1_CHLSO (Acyltransferase chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TRL1_CHLSO)

HSP 1 Score: 105 bits (261), Expect = 1.860e-24
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   22 FFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVAD 243
            F   FGAVPVS +NM+RLL+  + VLLFPGGV EAY R+GE+YQLFWPEK+EF+R A   GA IVPF+A+GV D
Sbjct:  515 FMSTFGAVPVSAKNMHRLLQNKEAVLLFPGGVREAYKRRGEEYQLFWPEKSEFIRMAARFGATIVPFAAVGVDD 588          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: A0A6H5KW82_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW82_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.440e-24
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   13 VVSFFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVADR 246
            V  F  + GAV V+PRNM RL K G+++LL+PGGV EA H+KG++YQ+FWPEK EFVR A +  A IVPF+A+G ADR
Sbjct:  613 VGDFMVKLGAVSVTPRNMLRLFKAGESMLLYPGGVKEALHQKGQEYQIFWPEKGEFVRMAASFNATIVPFAAVGSADR 690          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: A0A835Z8H3_9STRA (Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.720e-24
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    4 GTCVVSFFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVADRY 249
            GT V   F  FGAVPVS +N+++LL++ + VLLFPGG  EAYH +GE+ QLFWP+K+E +R AV++ AIIVPFSAIG A+ +
Sbjct:  452 GTFVRDVFSAFGAVPVSGKNLFKLLRQKEAVLLFPGGAREAYHLRGEENQLFWPDKSEAIRMAVSTNAIIVPFSAIGAAESF 533          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: A0A7S3ZGH9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZGH9_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 1.210e-23
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   19 SFFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVAD 243
            + F  FGAVPVS RN+  LLK     LLFPGGV E YH+KGEDYQ+FWPEK EFVR A    + IVPF+A+GVAD
Sbjct:  245 NIFKTFGAVPVSGRNLDALLKSQTPTLLFPGGVREVYHKKGEDYQIFWPEKGEFVRTAAKHNSTIVPFAAVGVAD 319          
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Match: C1FGI1_MICCC (PlsC domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FGI1_MICCC)

HSP 1 Score: 102 bits (254), Expect = 1.630e-23
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   16 VSFFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDYQLFWPEKAEFVRQAVASGAIIVPFSAIGVAD 243
            V  F  FGAVPVS  N YRLL  G+ VLLFPGGV EA+ R+ E+Y+LFWP K EFVR AV  GA+IVPF+A+G  D
Sbjct:  460 VGMFTTFGAVPVSGMNFYRLLDAGETVLLFPGGVREAFKRRNEEYKLFWPSKPEFVRMAVRHGAVIVPFAAVGAED 535          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10070.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M7_ECTSI3.590e-4092.41AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
D7G6D6_ECTSI5.610e-2865.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2P6V1X8_9CHLO7.390e-2568.92Acyltransferase chloroplastic n=1 Tax=Micractinium... [more]
E1Z887_CHLVA1.380e-2466.22Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S0GWF7_MICPS1.420e-2461.54Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A2P6TRL1_CHLSO1.860e-2466.22Acyltransferase chloroplastic n=1 Tax=Chlorella so... [more]
A0A6H5KW82_9PHAE6.440e-2460.26AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A835Z8H3_9STRA8.720e-2458.54Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3ZGH9_9EUKA1.210e-2364.00Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
C1FGI1_MICCC1.630e-2363.16PlsC domain-containing protein n=1 Tax=Micromonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10070contigEcto-sp13_S_contig10070:647..1461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score151.4
Seed ortholog evalue1.9e-34
Seed eggNOG ortholog2880.D7G4M7
Model size255
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
Exons2
EggNOG free text desc.fatty alcohol metabolic process
EggNOG OGs2QQUD@2759,COG0204@1
Cds size255
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.2494085-CDS-Ecto-sp13_S_contig10070:646..7831681462505.2494085-CDS-Ecto-sp13_S_contig10070:646..783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10070 647..783 +
1681462505.263881-CDS-Ecto-sp13_S_contig10070:1343..14611681462505.263881-CDS-Ecto-sp13_S_contig10070:1343..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10070 1344..1461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10070.95.1prot_Ecto-sp13_S_contig10070.95.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10070 647..1461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10070.95.1

>prot_Ecto-sp13_S_contig10070.95.1 ID=prot_Ecto-sp13_S_contig10070.95.1|Name=mRNA_Ecto-sp13_S_contig10070.95.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
RGTCVVSFFFQFGAVPVSPRNMYRLLKRGDNVLLFPGGVSEAYHRKGEDY
QLFWPEKAEFVRQAVASGAIIVPFSAIGVADRYAL
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mRNA from alignment at Ecto-sp13_S_contig10070:647..1461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10070.95.1 ID=mRNA_Ecto-sp13_S_contig10070.95.1|Name=mRNA_Ecto-sp13_S_contig10070.95.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10070:647..1461+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGAACGTGTGTCGTCTCGTTTTTTTTTCAGTTTGGGGCGGTGCCAGT ATCCCCGCGAAACATGTACCGCCTGCTGAAGAGAGGGGATAACGTGCTGC TGTTCCCCGGTGGAGTGAGCGAGGCATACCACAGAAAGTGAGGGCTAACG TTTGCGCTGCATGCGTGGCAAGCTGTTTTGCGTGAGGGGATGGATGAGTT GTTGTGCCCCCCCCCGGTTGGTCGTGCAACGTCCAAAGCAATGAATCACC GGTGGTGTTTTGGTCGGGGATTTATATCGAATGTTCGACATGCTCACCGG GATGTCGTTTCCATGTATCCTTCGGGATGAGACGTACTTGCCTGGAACCA GGGGTGCTGTTGCTGTTCGATGCATTGCTTCGGTTGGGTGTCACGACCTG ATTGCCAACATGTTCGTCGCATCGCAAACAGAACAGGCATCGTGTGGTAG TGCCTATACCCCACGAATGAAACGATACGGAAAAATGCACGTTTGCATCA AACCAACATCATCACGTTTCTCACCTCTCTTGGCGTTACTGTTTGGCCTG CGGACGGCGTCTCTTCGTGCAATCCACGGGCATCATATTCCTGGTGAAAC TTTCCTTGCAACATGGGATAGACACGAATCGTTTTTGTGCGGAACTACTA CAGACATACACCGTTTTCGTGCCGAACGACGAATCGATATGGCACAGGGG CGAGGACTACCAGCTTTTCTGGCCGGAGAAGGCGGAGTTCGTTCGTCAAG CCGTCGCCTCCGGCGCTATCATCGTTCCCTTCTCCGCCATTGGCGTCGCC GATAGGTACGCGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10070:647..1461+

>mRNA_Ecto-sp13_S_contig10070.95.1 ID=mRNA_Ecto-sp13_S_contig10070.95.1|Name=mRNA_Ecto-sp13_S_contig10070.95.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10070:647..1461+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGAACGTGTGTCGTCTCGTTTTTTTTTCAGTTTGGGGCGGTGCCAGT
ATCCCCGCGAAACATGTACCGCCTGCTGAAGAGAGGGGATAACGTGCTGC
TGTTCCCCGGTGGAGTGAGCGAGGCATACCACAGAAAGGGCGAGGACTAC
CAGCTTTTCTGGCCGGAGAAGGCGGAGTTCGTTCGTCAAGCCGTCGCCTC
CGGCGCTATCATCGTTCCCTTCTCCGCCATTGGCGTCGCCGATAGGTACG
CGCTC
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