mRNA_Ecto-sp13_S_contig11030.913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 388 bits (997), Expect = 1.080e-128 Identity = 209/267 (78.28%), Postives = 221/267 (82.77%), Query Frame = 3
Query: 480 MNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVKP*LGYTMFVTLSLPREGLWP*LLFRSSPTSSGRSSRRADLSQD*TGTLRLESLAEIVATF 1280
MNQHMDIMA+LTGAGVRD MGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG+PRIVRLLVDAGADTTSTV+VTNL+GGVEYN TPLAVTTS LREKV+DGKPAT+EQL RLQAIRRLLLRVDAVHAVSWLWPSDAPS+VHAVERSCGPEPRRP LSLTL LKRRAKT H+FVA+LLR SSP SSGR SRRADLS++ GT+ LESL E TF
Sbjct: 1 MNQHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLR-----------------------------SSPISSGRGSRRADLSKEKAGTVSLESLGETAVTF 238
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 288 bits (736), Expect = 9.010e-86 Identity = 185/365 (50.68%), Postives = 219/365 (60.00%), Query Frame = 3
Query: 12 AQESNASVVKMLTNAGADLEVVA*SDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVH-AYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVI-DGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVK 1100
A+E + ++VK+L AGADL+ + +G PLH A NP+ Q P G T L + A A+ + S P TT VPLD+AA G+ DVVREL+QE+GIEGCDAT+A AL AA NQH+DIMA+LT AGV DT G L AG+G EASV+FLLR R KE V AY N+ D +G TPL + C S +PRIVR+LVDAGADTTS VQV NL GGV +N TPLA T LR+K++ DGKPAT E LQRL+AI RLLLRVDAVHAVSWLWPS AP + A E PEP P L L L LKRR K R VA+LLR+SVK
Sbjct: 181 AREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTA----LHIAAEEGQVAVMRELLRGN------------ANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDT-GKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETD--PEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 218 bits (555), Expect = 4.860e-61 Identity = 126/228 (55.26%), Postives = 159/228 (69.74%), Query Frame = 3
Query: 309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVID-GKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVER 986
A I S G VPLD+AA +G+ VVR LVQE+GI+GC+ NA +QAL LAA + +D +A+LTGAG DT G L+ A EAS + LRQR KE + V +A N SG+T L SI+ C S +PRIVRLL++AGADTTS ++ TN G V+ NGTPLA+TTS+L EK++D G+PAT+E LQRL+AIRRLLLR +AVHAVSWLWPSDA + HA E+
Sbjct: 155 APCICIQPPSSSGFPGVPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGSALMCAA----EASFKHFLRQRLKEEKGGVEYASINDRISSGLTALVFSIQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEK 378
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D8LDX5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX5_ECTSI) HSP 1 Score: 194 bits (494), Expect = 8.330e-53 Identity = 155/291 (53.26%), Postives = 188/291 (64.60%), Query Frame = 3
Query: 45 LTNAGADLEVVA*SDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVI-DGKPATDEQLQRLQAIRRLLL 911
+ AGADLEV+ S G TPLH G SE V +I A ANPNS R + XXXXXXXXXXXXXXXXXXXXXX ++ +S G T +P+D+A G+ DVVR+LVQ G +A + A QAL AA QH+ IMA+LTGAGV D +G LLG A EASV+FLLRQR ES SV ++Y N+SD G TPL+ SI+ C S + RI+RLL DAGAD S V+VTN +G EY+GTPLAV TS +REKV+ +G PAT+E L L+AI RLLL
Sbjct: 1 MIGAGADLEVMT-SQGSTPLHKDALEGRSEVVGVMIRALANPNS---------------RMLCGAXXXXXXXXXXXXXXXXXXXXXXXXXFLTKKGNSSSGDTAIPMDVAVQNGHSDVVRKLVQWRGCGVANAGSQACQALFFAASEQHLVIMAILTGAGVVDWVGLSLLGAAESALEASVKFLLRQRYHESTRSVEYSYVNASDTDGWTPLAHSIQRCCSHAARIIRLLFDAGADVASAVRVTNSNGQQEYSGTPLAVVTSCIREKVLANGTPATEEHLYMLEAIGRLLL 275
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 196 bits (499), Expect = 1.700e-52 Identity = 122/268 (45.52%), Postives = 169/268 (63.06%), Query Frame = 3
Query: 309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKV--IDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPR-RPRLSLTLLFLKRRAKTRHLFVASLLRHSVKP 1103
A + T+ P G T +PLD AA G+ +VV EL+++VGI+GC ++ +AL AA ++++IM +LT AGV DT G L+ AG G E ++FLL Q R M AY N+ D G+TPL I+ PR+VRLLV+AGADTTS V V N GG + + TPL +T + +R+KV + PA+ EQL +L+AIRRLLLRV+AVHAVSWLWPSD ++ A R ++L +L +RRA+ R + +A+LLR+S KP
Sbjct: 172 ADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDT-GLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYR---PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 187 bits (476), Expect = 4.420e-49 Identity = 128/337 (37.98%), Postives = 179/337 (53.12%), Query Frame = 3
Query: 96 TPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLS--LTLLFLKRRAKTRHLFVASLLRHSVK 1100
TPL A G + +V AL++AG+N N++ G T A + T S +PLD+AA G+ +VV EL+++VGI+GC ++ E AL AA+ +DIMA+LT AGV DT G L+ AG G EA ++FLL Q R AY N+ +G G+T L I+ C PR+V+LLV+AGADTTS V + N G +++ TPL +T L + KP T E+ +L+ IRRLLLR +AVHAVSWLWPSD P++ HA + G + +L + RR + R +A+LLR+S K
Sbjct: 117 TPLDCAAETGCAASVTALLKAGSNINTRRSDGAT----------------PLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDT-GLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCR---PRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGR--SAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 177 bits (448), Expect = 2.000e-45 Identity = 116/259 (44.79%), Postives = 155/259 (59.85%), Query Frame = 3
Query: 351 TVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCS----SGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPS----MVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVKP 1103
T++PLD AA G L V+REL+Q VGIEGC + E AL +A + + MA+LT AGV DT G L +AGLGREASV++LL+ K AY N D +G TPL SI C S PR+ RLLV+AGADTT+ ++ TN G V ++ TPL +T L++K +DG + ++L RL+ IRRLLL+V+AVHA SWLWPS + +A E + P+L L L+RRA+ + +L RH KP
Sbjct: 169 TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDT-GQALTISAGLGREASVKYLLQNHAKH--YGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE) HSP 1 Score: 167 bits (423), Expect = 4.930e-42 Identity = 102/224 (45.54%), Postives = 131/224 (58.48%), Query Frame = 3
Query: 309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAV 980
A+ + S +P G T VPLD+A G+ +VVREL ++G+ GC + ++L LA Q +DIM +LT GV DT G L+ A RE SV+FLL+ + V+ N+ D G TPL C+IE C S SPRI R L+DA ADT STV VT TPL T LR+ + K AT+EQL+ L+AI RLL +VDAVHAVSWLW S +AV
Sbjct: 156 ANTLLASVPAPSGATFVPLDVAVQHGHSEVVRELTHQLGVRGCGGVSGGVESLRLATTEQDVDIMGILTVGGVVDT-GRALVVAAENSREESVKFLLQHQAGGGAWYVN---NTLDPFGRTPLVCTIEACGSSSPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKVGRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLWRSSDTRNSYAV 375
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 165 bits (417), Expect = 2.750e-41 Identity = 112/266 (42.11%), Postives = 146/266 (54.89%), Query Frame = 3
Query: 309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG--SPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVK 1100
A+ + T S G + VPL++AA G VV EL++E GI C + AL +AA+ +DIM+ML AGV D +G LL G G+EA+V FLLRQ+ + + S A DG +T L S + +PRI R LVDAGADTTS VQ+ N TPL + + PATDEQL RL+A RR+LLRV AVHAVSW+WPSDAP + + +L+ L L+RRA R L +L R+S K
Sbjct: 142 ANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTSYVNIARDDDG--LTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.930e-40 Identity = 95/199 (47.74%), Postives = 124/199 (62.31%), Query Frame = 3
Query: 384 GYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAV 980
G+ +VVREL+Q++G+ GC +A ++L LAA Q++DIM +LT GV DT G L+ A RE SV+FLL+ + V+ N+ D G TPL C+IE C S SPRI R L+D GADT STV VT TPL T LR+ + GK AT+EQL+ L+AI RLL +++AVHAVSWLW S + HAV
Sbjct: 191 GHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDT-GRALVVAAEYSREESVKFLLQHQAGGGTWYVN---NTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAV 385 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11030.913.1 >prot_Ecto-sp13_S_contig11030.913.1 ID=prot_Ecto-sp13_S_contig11030.913.1|Name=mRNA_Ecto-sp13_S_contig11030.913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp MGFLSLRAVTPLHIAAAKGRTGALRELLRSKANPAASAISTSRSSPYGTTback to top mRNA from alignment at Ecto-sp13_S_contig11030:1498..4632+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11030.913.1 ID=mRNA_Ecto-sp13_S_contig11030.913.1|Name=mRNA_Ecto-sp13_S_contig11030.913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11030:1498..4632+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11030:1498..4632+ >mRNA_Ecto-sp13_S_contig11030.913.1 ID=mRNA_Ecto-sp13_S_contig11030.913.1|Name=mRNA_Ecto-sp13_S_contig11030.913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11030:1498..4632+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |