mRNA_Ecto-sp13_S_contig11030.913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11030.913.1
Unique NamemRNA_Ecto-sp13_S_contig11030.913.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 1.080e-128
Identity = 209/267 (78.28%), Postives = 221/267 (82.77%), Query Frame = 3
Query:  480 MNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVKP*LGYTMFVTLSLPREGLWP*LLFRSSPTSSGRSSRRADLSQD*TGTLRLESLAEIVATF 1280
            MNQHMDIMA+LTGAGVRD MGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG+PRIVRLLVDAGADTTSTV+VTNL+GGVEYN TPLAVTTS LREKV+DGKPAT+EQL RLQAIRRLLLRVDAVHAVSWLWPSDAPS+VHAVERSCGPEPRRP LSLTL  LKRRAKT H+FVA+LLR                             SSP SSGR SRRADLS++  GT+ LESL E   TF
Sbjct:    1 MNQHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLR-----------------------------SSPISSGRGSRRADLSKEKAGTVSLESLGETAVTF 238          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 9.010e-86
Identity = 185/365 (50.68%), Postives = 219/365 (60.00%), Query Frame = 3
Query:   12 AQESNASVVKMLTNAGADLEVVA*SDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVH-AYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVI-DGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVK 1100
            A+E + ++VK+L  AGADL+ +   +G  PLH A                 NP+ Q P G T     L + A                           A+ +    S P  TT VPLD+AA  G+ DVVREL+QE+GIEGCDAT+A   AL  AA NQH+DIMA+LT AGV DT G  L   AG+G EASV+FLLR R KE    V  AY N+ D +G TPL    + C S +PRIVR+LVDAGADTTS VQV NL GGV +N TPLA T   LR+K++ DGKPAT E LQRL+AI RLLLRVDAVHAVSWLWPS AP +  A E    PEP  P L L L  LKRR K R   VA+LLR+SVK
Sbjct:  181 AREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTA----LHIAAEEGQVAVMRELLRGN------------ANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDT-GKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETD--PEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 4.860e-61
Identity = 126/228 (55.26%), Postives = 159/228 (69.74%), Query Frame = 3
Query:  309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVID-GKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVER 986
            A  I     S  G   VPLD+AA +G+  VVR LVQE+GI+GC+  NA +QAL LAA  + +D +A+LTGAG  DT G  L+  A    EAS +  LRQR KE +  V +A  N    SG+T L  SI+ C S +PRIVRLL++AGADTTS ++ TN  G V+ NGTPLA+TTS+L EK++D G+PAT+E LQRL+AIRRLLLR +AVHAVSWLWPSDA  + HA E+
Sbjct:  155 APCICIQPPSSSGFPGVPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGSALMCAA----EASFKHFLRQRLKEEKGGVEYASINDRISSGLTALVFSIQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEK 378          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D8LDX5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX5_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 8.330e-53
Identity = 155/291 (53.26%), Postives = 188/291 (64.60%), Query Frame = 3
Query:   45 LTNAGADLEVVA*SDGLTPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVI-DGKPATDEQLQRLQAIRRLLL 911
            +  AGADLEV+  S G TPLH     G SE V  +I A ANPNS               R +   XXXXXXXXXXXXXXXXXXXXXX    ++   +S  G T +P+D+A   G+ DVVR+LVQ  G    +A + A QAL  AA  QH+ IMA+LTGAGV D +G  LLG A    EASV+FLLRQR  ES  SV ++Y N+SD  G TPL+ SI+ C S + RI+RLL DAGAD  S V+VTN +G  EY+GTPLAV TS +REKV+ +G PAT+E L  L+AI RLLL
Sbjct:    1 MIGAGADLEVMT-SQGSTPLHKDALEGRSEVVGVMIRALANPNS---------------RMLCGAXXXXXXXXXXXXXXXXXXXXXXXXXFLTKKGNSSSGDTAIPMDVAVQNGHSDVVRKLVQWRGCGVANAGSQACQALFFAASEQHLVIMAILTGAGVVDWVGLSLLGAAESALEASVKFLLRQRYHESTRSVEYSYVNASDTDGWTPLAHSIQRCCSHAARIIRLLFDAGADVASAVRVTNSNGQQEYSGTPLAVVTSCIREKVLANGTPATEEHLYMLEAIGRLLL 275          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.700e-52
Identity = 122/268 (45.52%), Postives = 169/268 (63.06%), Query Frame = 3
Query:  309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKV--IDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPR-RPRLSLTLLFLKRRAKTRHLFVASLLRHSVKP 1103
            A  + T+   P G T +PLD AA  G+ +VV EL+++VGI+GC  ++   +AL  AA  ++++IM +LT AGV DT G  L+  AG G E  ++FLL Q R    M   AY N+ D  G+TPL   I+      PR+VRLLV+AGADTTS V V N  GG + + TPL +T + +R+KV  +   PA+ EQL +L+AIRRLLLRV+AVHAVSWLWPSD  ++  A  R           ++L +L  +RRA+ R + +A+LLR+S KP
Sbjct:  172 ADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDT-GLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYR---PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 4.420e-49
Identity = 128/337 (37.98%), Postives = 179/337 (53.12%), Query Frame = 3
Query:   96 TPLHAAVRGGDSEAVRALIEAGANPNSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLS--LTLLFLKRRAKTRHLFVASLLRHSVK 1100
            TPL  A   G + +V AL++AG+N N++   G T                                     A  + T  S       +PLD+AA  G+ +VV EL+++VGI+GC  ++  E AL  AA+   +DIMA+LT AGV DT G  L+  AG G EA ++FLL Q R        AY N+ +G G+T L   I+ C    PR+V+LLV+AGADTTS V + N  G  +++ TPL +T   L  +    KP T E+  +L+ IRRLLLR +AVHAVSWLWPSD P++ HA  +  G        +    +L + RR + R   +A+LLR+S K
Sbjct:  117 TPLDCAAETGCAASVTALLKAGSNINTRRSDGAT----------------PLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDT-GLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCR---PRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGR--SAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 2.000e-45
Identity = 116/259 (44.79%), Postives = 155/259 (59.85%), Query Frame = 3
Query:  351 TVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCS----SGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPS----MVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVKP 1103
            T++PLD AA  G L V+REL+Q VGIEGC   +  E AL +A   + +  MA+LT AGV DT G  L  +AGLGREASV++LL+   K       AY N  D +G TPL  SI  C     S  PR+ RLLV+AGADTT+ ++ TN  G V ++ TPL +T   L++K +DG   + ++L RL+ IRRLLL+V+AVHA SWLWPS +        +A E +       P+L   L  L+RRA+   +   +L RH  KP
Sbjct:  169 TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDT-GQALTISAGLGREASVKYLLQNHAKH--YGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.930e-42
Identity = 102/224 (45.54%), Postives = 131/224 (58.48%), Query Frame = 3
Query:  309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAV 980
            A+ +  S  +P G T VPLD+A   G+ +VVREL  ++G+ GC   +   ++L LA   Q +DIM +LT  GV DT G  L+  A   RE SV+FLL+ +       V+   N+ D  G TPL C+IE C S SPRI R L+DA ADT STV VT          TPL   T  LR+  +  K AT+EQL+ L+AI RLL +VDAVHAVSWLW S      +AV
Sbjct:  156 ANTLLASVPAPSGATFVPLDVAVQHGHSEVVRELTHQLGVRGCGGVSGGVESLRLATTEQDVDIMGILTVGGVVDT-GRALVVAAENSREESVKFLLQHQAGGGAWYVN---NTLDPFGRTPLVCTIEACGSSSPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKVGRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLWRSSDTRNSYAV 375          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.750e-41
Identity = 112/266 (42.11%), Postives = 146/266 (54.89%), Query Frame = 3
Query:  309 ASAISTSRSSPYGTTVVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG--SPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVK 1100
            A+ + T  S   G + VPL++AA  G   VV EL++E GI  C   +    AL +AA+   +DIM+ML  AGV D +G  LL   G G+EA+V FLLRQ+ +  + S    A   DG  +T L  S     +   +PRI R LVDAGADTTS VQ+         N TPL     +   +     PATDEQL RL+A RR+LLRV AVHAVSW+WPSDAP +          +    +L+  L  L+RRA  R L   +L R+S K
Sbjct:  142 ANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTSYVNIARDDDG--LTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405          
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.930e-40
Identity = 95/199 (47.74%), Postives = 124/199 (62.31%), Query Frame = 3
Query:  384 GYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIMAMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNGTPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPSDAPSMVHAV 980
            G+ +VVREL+Q++G+ GC   +A  ++L LAA  Q++DIM +LT  GV DT G  L+  A   RE SV+FLL+ +       V+   N+ D  G TPL C+IE C S SPRI R L+D GADT STV VT          TPL   T  LR+  + GK AT+EQL+ L+AI RLL +++AVHAVSWLW S    + HAV
Sbjct:  191 GHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDT-GRALVVAAEYSREESVKFLLQHQAGGGTWYVN---NTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAV 385          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11030.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC5_ECTSI1.080e-12878.28EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI9.010e-8650.68EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVU0_ECTSI4.860e-6155.26EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LDX5_ECTSI8.330e-5353.26EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE1.700e-5245.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV0_9PHAE4.420e-4937.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI2.000e-4544.79EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K037_9PHAE4.930e-4245.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU3_ECTSI2.750e-4142.11EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1U9_ECTSI1.930e-4047.74EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11030contigEcto-sp13_S_contig11030:1498..4632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score294.7
Seed ortholog evalue5e-77
Seed eggNOG ortholog2880.D7FT11
Model size1990
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionEsV-1-199
Ec32 orthologEc-21_003200.1
Cds size903
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.8409421-UTR-Ecto-sp13_S_contig11030:1497..17001681462571.8409421-UTR-Ecto-sp13_S_contig11030:1497..1700Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11030 1498..1700 +
1681462571.8725636-UTR-Ecto-sp13_S_contig11030:3722..37351681462571.8725636-UTR-Ecto-sp13_S_contig11030:3722..3735Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11030 3723..3735 +
1681462571.8890839-UTR-Ecto-sp13_S_contig11030:3761..46321681462571.8890839-UTR-Ecto-sp13_S_contig11030:3761..4632Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11030 3762..4632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.8528717-CDS-Ecto-sp13_S_contig11030:1700..25841681462571.8528717-CDS-Ecto-sp13_S_contig11030:1700..2584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11030 1701..2584 +
1681462571.86312-CDS-Ecto-sp13_S_contig11030:3703..37221681462571.86312-CDS-Ecto-sp13_S_contig11030:3703..3722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11030 3704..3722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11030.913.1prot_Ecto-sp13_S_contig11030.913.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11030 1701..3722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11030.913.1

>prot_Ecto-sp13_S_contig11030.913.1 ID=prot_Ecto-sp13_S_contig11030.913.1|Name=mRNA_Ecto-sp13_S_contig11030.913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
MGFLSLRAVTPLHIAAAKGRTGALRELLRSKANPAASAISTSRSSPYGTT
VVPLDIAACAGYLDVVRELVQEVGIEGCDATNAAEQALHLAAMNQHMDIM
AMLTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSS
DGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSTVQVTNLHGGVEYNG
TPLAVTTSFLREKVIDGKPATDEQLQRLQAIRRLLLRVDAVHAVSWLWPS
DAPSMVHAVERSCGPEPRRPRLSLTLLFLKRRAKTRHLFVASLLRHSVKP
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mRNA from alignment at Ecto-sp13_S_contig11030:1498..4632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11030.913.1 ID=mRNA_Ecto-sp13_S_contig11030.913.1|Name=mRNA_Ecto-sp13_S_contig11030.913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11030:1498..4632+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCACATTGGCGCTCAAGAGAGCAACGCCTCCGTCGTCAAAATGTTGACG AACGCCGGCGCCGACCTCGAAGTCGTCGCGTGATCCGACGGCTTGACACC GCTTCACGCGGCGGTAAGAGGAGGAGACTCGGAGGCGGTGAGAGCGTTGA TCGAGGCAGGAGCGAATCCCAACAGTCAAACGCCAAGCGGGGTGACTGTT GGCATGGGTTTTCTTTCATTACGAGCCGTGACACCACTGCACATCGCGGC TGCAAAAGGACGCACGGGTGCGTTGAGGGAGCTGCTTCGTTCCAAGGCGA ACCCAGCCGCGAGTGCAATTTCAACATCGAGGTCATCGCCATACGGGACA ACTGTCGTTCCACTGGACATAGCTGCCTGCGCCGGGTACTTGGACGTGGT GCGCGAGCTAGTTCAGGAGGTTGGGATTGAAGGTTGTGATGCTACGAATG CCGCGGAACAAGCTCTCCACCTCGCCGCAATGAACCAGCACATGGACATT ATGGCCATGCTGACCGGAGCCGGCGTGCGCGACACGATGGGCTACGTTCT CCTTGGTACCGCCGGATTGGGCCGTGAGGCATCCGTCCAGTTTCTCTTGC GGCAGCGACGCAAGGAGAGTGAAATGAGCGTCCATGCGTACGCCAACTCC AGCGACGGTTCCGGCATGACACCCCTGAGTTGCAGTATTGAATGGTGCAG CTCTGGGAGTCCCAGGATCGTACGGTTGCTCGTTGACGCTGGAGCAGATA CGACATCGACCGTTCAAGTCACGAACTTGCACGGAGGGGTGGAGTACAAC GGCACACCTCTGGCTGTCACAACCTCGTTCCTTCGCGAGAAGGTTATAGA CGGCAAACCCGCCACGGACGAGCAGCTGCAAAGGCTGCAGGCCATCCGTC GCTTGCTGTTGCGAGTCGACGCAGTCCATGCGGTGTCTTGGCTGTGGCCA AGCGATGCCCCCTCCATGGTCCATGCTGTAGAGAGGTCCTGTGGTCCCGA GCCGCGTAGGCCACGGCTGAGCCTGACGTTGTTATTCCTGAAGCGACGGG CAAAGACACGTCACTTGTTCGTCGCATCACTCTTGAGGTGAGGAGAGTGA TATGTCATTGAACTTTCGACATAGTGCATTCTGTGGACAGCACCGTTCCC CGCTCTTCTGTTGTTGATCGAGGCTTGCAGAGTATTGGCCAAGAAACAAG CATCTACTTCTATCGCATAGTTCTTGTTTCGGCGGGCCGATGGCTGTTGC AATTGTTGAGGGTTGTCGTTGTCAGTTTTTGGTGATAAGTACTGCGTACA AGAGAAACATTGTGGCCATACGGGGGTTGCTCCCTGGGTTCTTACGGCAG TGTTTCCCATGGGTTGGTTGACCCCAGGCACCGGGTATAAAGTGTTTTCA TCGGTATGGCTTCACACTGCGGTAGGCCCTACCCTGAGACCTCAGAAGAC TGTAGGACCTCGTGAATCACAAACACAGGAGCGTCCGTAGATGTCATCGG GAGCATGAACTCGAACATGGGCATTGCGCAGCGCACCAGCCACCTCCGCA AAACACGAGGAACCAACCTTGTTGACCCAAAACTTGGAGTTTTGGCATTT CTGCTCTTCCGTACCTTGGGCTCCTAAACATGCCATTGCCCGTGCGATCG TGTCTCAACCTGTTACTTGGCACGTCGATCGTTCCGGCACGAACTCTGAA GAACGTTTGCCGAAATGACCGTTTCCTATGTGGAACGCACCTTCTTCACA AAGGTACAATCTCCTCATCGTCTGTCAAGGACGATTCCCTCTTTCCATAT TGGAAGGGCTTTCTCCTATTATAGTAGAATATGTATTCGGAGTAACACGA ACAGCATGACGTTGGTACAAACCCTGTTAACCCTCCTCCCGGCTCGATTT TTTCGGGGGAAAGGAAAAATCACCCACAATGACTTCACTGAGGTTAAAGT GGGGCAGCTTAACCCGGCATTACCAGCGCGGTCTGTGGATCTTCCAGTGT AAATAGTTTGGGCTTCAGTTGCCAAACTACCAAGTTCTCCATTGGTGGCG CTTATCTGTTTGCCTTGCCGGTCTCTTGTTCTTGCATTGTTCATACCGTT GTTCAGCCGGAACTGCTGTCACGCTACCCTCGCTCCTGCTTCAACCGTTT ATTGTCCTGAGTGTTCCGTTTCAAGCTATGATCCCGAATCGCGTGCTTAC TTGCAGGCATTCGGTGAAGCCTTGACTGGGATATACTACAAAAGCGGCGG GCGCGAGATTGCGGTGTTCGTCACCCTCTCTCTACCGCGCGAGGGATTAT GGCCTTGACTGCTGTTCAGGAGTTCTCCGACATCCAGCGGGCGCAGCTCA CGAAGAGCTGATCTCTCCCAGGACTAGACGGGGACCCTTCGCTTGGAAAG TTTGGCCGAAATTGTTGCCACATTTCTGTGTATATTCCGTTGTAGAGCGA ACGTATGAAAACGAAGATCTGTTTCAGCCCCTCTCGGCGGAGCGTGAAGA CGTTAAACACCTCGCAGCTCTGATTACTGCTGCCCTTGCTCTTTGACCCG CGGAGAGGTACATGCCGCTGCTTCACCAACGTTGACGTCCAACTGGAAGA TATCTGTATGATGCGACCATGACGCCCACATGCTTGTGCTGGCGGCCAGG GAGGGACCGTGGCGTTGTCTGCCACTTGCACCACATGCTTCATTGGTGCG ACATACGTCTTTTTTGTTGCGATGGGTCCACTTGGTGAAGAACGAGTCCA ACTTTGTGCCAAGCTGCTCCCTCGGTGGCAACCAACGAGTCCTTCGTTGC TCTTATTCACACTGCTCATATCCTCTTTTTCGAGCGTCTTTCGAGCGCAG CCATGTGAAGTGGTGCCGATGGTCGCTGCGATCGTGTTGAGCAGCAAATG TCGCGTGATGTAACCGGCATCCTCCACAGCTTCGCTTTCGATGAGTTCTT TGCCCAGCAGAATCTTTCTCGTCAGGGCCCACACTTTCGATGACCCCAGA GAGTCATGGTCTGAACAACGCTGATTTGCTGTTGCAAAAATATTTACTCC AACAAGACTTTGGTCTTATTTATGGGCCTCGACCTTTCTATGTAGTCAAG ATGAGTCTTCGTTCGATGGAATCATCATTGGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11030:1498..4632+

>mRNA_Ecto-sp13_S_contig11030.913.1 ID=mRNA_Ecto-sp13_S_contig11030.913.1|Name=mRNA_Ecto-sp13_S_contig11030.913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11030:1498..4632+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTTTCTTTCATTACGAGCCGTGACACCACTGCACATCGCGGCTGC
AAAAGGACGCACGGGTGCGTTGAGGGAGCTGCTTCGTTCCAAGGCGAACC
CAGCCGCGAGTGCAATTTCAACATCGAGGTCATCGCCATACGGGACAACT
GTCGTTCCACTGGACATAGCTGCCTGCGCCGGGTACTTGGACGTGGTGCG
CGAGCTAGTTCAGGAGGTTGGGATTGAAGGTTGTGATGCTACGAATGCCG
CGGAACAAGCTCTCCACCTCGCCGCAATGAACCAGCACATGGACATTATG
GCCATGCTGACCGGAGCCGGCGTGCGCGACACGATGGGCTACGTTCTCCT
TGGTACCGCCGGATTGGGCCGTGAGGCATCCGTCCAGTTTCTCTTGCGGC
AGCGACGCAAGGAGAGTGAAATGAGCGTCCATGCGTACGCCAACTCCAGC
GACGGTTCCGGCATGACACCCCTGAGTTGCAGTATTGAATGGTGCAGCTC
TGGGAGTCCCAGGATCGTACGGTTGCTCGTTGACGCTGGAGCAGATACGA
CATCGACCGTTCAAGTCACGAACTTGCACGGAGGGGTGGAGTACAACGGC
ACACCTCTGGCTGTCACAACCTCGTTCCTTCGCGAGAAGGTTATAGACGG
CAAACCCGCCACGGACGAGCAGCTGCAAAGGCTGCAGGCCATCCGTCGCT
TGCTGTTGCGAGTCGACGCAGTCCATGCGGTGTCTTGGCTGTGGCCAAGC
GATGCCCCCTCCATGGTCCATGCTGTAGAGAGGTCCTGTGGTCCCGAGCC
GCGTAGGCCACGGCTGAGCCTGACGTTGTTATTCCTGAAGCGACGGGCAA
AGACACGTCACTTGTTCGTCGCATCACTCTTGAGGCATTCGGTGAAGCCT
TGA
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