mRNA_Ecto-sp13_S_contig10064.89.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10064.89.1
Unique NamemRNA_Ecto-sp13_S_contig10064.89.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10064.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10064contigEcto-sp13_S_contig10064:5011..5180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size170
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_002840.1
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.6165698-CDS-Ecto-sp13_S_contig10064:5010..51301681462504.6165698-CDS-Ecto-sp13_S_contig10064:5010..5130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10064 5011..5130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.6266613-UTR-Ecto-sp13_S_contig10064:5130..51801681462504.6266613-UTR-Ecto-sp13_S_contig10064:5130..5180Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10064 5131..5180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10064.89.1prot_Ecto-sp13_S_contig10064.89.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10064 5011..5130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10064.89.1

>prot_Ecto-sp13_S_contig10064.89.1 ID=prot_Ecto-sp13_S_contig10064.89.1|Name=mRNA_Ecto-sp13_S_contig10064.89.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
MTSGDFCSRAPGRLIRPTDPPQPNGFNPLVLGDAIQSKK*
back to top

mRNA from alignment at Ecto-sp13_S_contig10064:5011..5180+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10064.89.1 ID=mRNA_Ecto-sp13_S_contig10064.89.1|Name=mRNA_Ecto-sp13_S_contig10064.89.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10064:5011..5180+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGCGGCGATTTCTGTTCGCGCGCCCCTGGACGTCTGATCCGACC
TACCGATCCGCCGCAGCCGAATGGTTTTAATCCTTTGGTGCTTGGGGATG
CAATCCAATCCAAGAAATGAACAGATCCTCGTGGCTCGTCATGCTTCGGC
ACCTGACAGGCCAATCGGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10064:5011..5180+

>mRNA_Ecto-sp13_S_contig10064.89.1 ID=mRNA_Ecto-sp13_S_contig10064.89.1|Name=mRNA_Ecto-sp13_S_contig10064.89.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10064:5011..5180+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGCGGCGATTTCTGTTCGCGCGCCCCTGGACGTCTGATCCGACC
TACCGATCCGCCGCAGCCGAATGGTTTTAATCCTTTGGTGCTTGGGGATG
CAATCCAATCCAAGAAATGA
back to top