mRNA_Ecto-sp13_S_contig10064.88.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10064.88.1
Unique NamemRNA_Ecto-sp13_S_contig10064.88.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A6H5JJG7_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG7_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.290e-56
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAEQQQSAGGAGASGAQW 285
            MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNR+QATEMFRLVSEAYEVLGD EKKRFYDTYGHEGVASAEQQQSA GAGASGAQW
Sbjct:    1 MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNRDQATEMFRLVSEAYEVLGDPEKKRFYDTYGHEGVASAEQQQSAEGAGASGAQW 95
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: D8LSR9_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR9_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 6.040e-55
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAEQQQSAGGAGASGAQW 285
            MAGKPCHYEVLGL RSASSGEVKKAYRKKALYWHPDKNPNNR+QATEMFRLVSEAYEVLGD EKKRFYDTYGHEGVASAEQQQSA GAGASGAQW
Sbjct:    1 MAGKPCHYEVLGLERSASSGEVKKAYRKKALYWHPDKNPNNRDQATEMFRLVSEAYEVLGDPEKKRFYDTYGHEGVASAEQQQSAEGAGASGAQW 95
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A7J7JLY2_BUGNE (DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JLY2_BUGNE)

HSP 1 Score: 102 bits (253), Expect = 1.370e-25
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAE 240
            +YEVLG++R+A+S E+KKAYRK+AL WHPDKNP  +E+A   F+L++EAYE+L D+EK++ YD YGHEG+   E
Sbjct:    8 YYEVLGISRTATSAEIKKAYRKQALQWHPDKNPEKKEEAETRFKLIAEAYEILSDKEKRQIYDKYGHEGLTGNE 81
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A7J7JPH2_BUGNE (DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JPH2_BUGNE)

HSP 1 Score: 102 bits (253), Expect = 4.000e-25
Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVASAE 240
            +YEVLG++R+A+S E+KKAYRK+AL WHPDKNP  +E+A   F+L++EAYE+L D+EK++ YD YGHEG+   E
Sbjct:    8 YYEVLGISRTATSAEIKKAYRKQALQWHPDKNPEKKEEAETRFKLIAEAYEILSDKEKRQIYDKYGHEGLTGNE 81
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A7S9B0_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S9B0_NEMVE)

HSP 1 Score: 98.2 bits (243), Expect = 6.720e-25
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVAS 234
            +YEVLG+ RSAS  +VKKAYR++AL WHPDKNP NRE A E F+ +SEAYEVL D+EK+  YD YG EG+ S
Sbjct:    5 YYEVLGVPRSASEEDVKKAYRRQALRWHPDKNPTNREHAEEKFKKLSEAYEVLSDKEKRDIYDKYGKEGLTS 76
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A6P6KJS8_CARAU (dnaJ homolog subfamily B member 6-like isoform X2 n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6KJS8_CARAU)

HSP 1 Score: 100 bits (249), Expect = 5.170e-24
Identity = 44/71 (61.97%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVA 231
            +YE+LG+ ++ S  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG++
Sbjct:    4 YYEILGVTKNTSQDDIKKAYRKKALKWHPDKNPNNKEQAEKMFKEISEAYEVLSDENKRRQYDKYGKEGLS 74
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: UPI000C0480FA (dnaJ homolog subfamily B member 6-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0480FA)

HSP 1 Score: 100 bits (248), Expect = 5.750e-24
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGV 228
            +YE+L + +SAS  E+KKAYRK AL WHPDKNP+N+E+A E F+L+SEAY+VL D+EK+R YDTYG EG+
Sbjct:    4 YYEILDVPKSASEQEIKKAYRKLALKWHPDKNPDNKEEAEEKFKLISEAYDVLSDKEKRRVYDTYGKEGL 73
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A673GJY2_9TELE (DnaJ homolog subfamily B member 6-like n=4 Tax=Cyprinoidei TaxID=30727 RepID=A0A673GJY2_9TELE)

HSP 1 Score: 101 bits (251), Expect = 1.010e-23
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVA 231
            +YE+LG+ ++AS  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG++
Sbjct:    4 YYEILGVTQNASHDDIKKAYRKKALKWHPDKNPNNKEQADKMFKEISEAYEVLSDENKRRQYDKYGKEGLS 74
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BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A673JAF1_9TELE (DnaJ homolog subfamily B member 6-like n=21 Tax=Cyprinidae TaxID=7953 RepID=A0A673JAF1_9TELE)

HSP 1 Score: 101 bits (251), Expect = 1.100e-23
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGVA 231
            +YE+LG+ ++AS  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG++
Sbjct:    4 YYEILGVTKNASHDDIKKAYRKKALKWHPDKNPNNKEQAEKMFKEISEAYEVLSDENKRRPYDRYGKEGLS 74
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Match: A0A8C1G5Z6_CYPCA (DnaJ heat shock protein family (Hsp40) member B6b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1G5Z6_CYPCA)

HSP 1 Score: 99.8 bits (247), Expect = 1.160e-23
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   19 HYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFRLVSEAYEVLGDQEKKRFYDTYGHEGV 228
            +YE+LG+ ++ S  ++KKAYRKKAL WHPDKNPNN+EQA +MF+ +SEAYEVL D+ K+R YD YG EG+
Sbjct:    4 YYEILGVTKNTSHDDIKKAYRKKALKWHPDKNPNNKEQAEKMFKEISEAYEVLSDENKRRQYDKYGKEGL 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10064.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJG7_9PHAE1.290e-5696.84HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LSR9_ECTSI6.040e-5595.79Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A7J7JLY2_BUGNE1.370e-2559.46DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A... [more]
A0A7J7JPH2_BUGNE4.000e-2559.46DNAJB6 n=1 Tax=Bugula neritina TaxID=10212 RepID=A... [more]
A7S9B0_NEMVE6.720e-2565.28Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A6P6KJS8_CARAU5.170e-2461.97dnaJ homolog subfamily B member 6-like isoform X2 ... [more]
UPI000C0480FA5.750e-2464.29dnaJ homolog subfamily B member 6-like n=1 Tax=Sty... [more]
A0A673GJY2_9TELE1.010e-2363.38DnaJ homolog subfamily B member 6-like n=4 Tax=Cyp... [more]
A0A673JAF1_9TELE1.100e-2363.38DnaJ homolog subfamily B member 6-like n=21 Tax=Cy... [more]
A0A8C1G5Z6_CYPCA1.160e-2362.86DnaJ heat shock protein family (Hsp40) member B6b ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10064contigEcto-sp13_S_contig10064:823..3642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score184.1
Seed ortholog evalue3.2e-44
Seed eggNOG ortholog2880.D8LSR9
Model size306
KEGG koko:K09512
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-15_002850.1
Cds size306
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.558982-CDS-Ecto-sp13_S_contig10064:822..9661681462504.558982-CDS-Ecto-sp13_S_contig10064:822..966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10064 823..966 -
1681462504.5781605-CDS-Ecto-sp13_S_contig10064:1990..20471681462504.5781605-CDS-Ecto-sp13_S_contig10064:1990..2047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10064 1991..2047 -
1681462504.5883317-CDS-Ecto-sp13_S_contig10064:3537..36421681462504.5883317-CDS-Ecto-sp13_S_contig10064:3537..3642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10064 3538..3642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10064.88.1prot_Ecto-sp13_S_contig10064.88.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10064 823..3642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10064.88.1

>prot_Ecto-sp13_S_contig10064.88.1 ID=prot_Ecto-sp13_S_contig10064.88.1|Name=mRNA_Ecto-sp13_S_contig10064.88.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKNPNNREQATEMFR
LVSEAYEVLGDQEKKRFYDTYGHEGVASAEQQQSAGGAGASGAQWVSSGE
E*
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mRNA from alignment at Ecto-sp13_S_contig10064:823..3642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10064.88.1 ID=mRNA_Ecto-sp13_S_contig10064.88.1|Name=mRNA_Ecto-sp13_S_contig10064.88.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10064:823..3642- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGTAAACCTTGCCACTATGAGGTGCTGGGGCTAGCGCGGAGCGC
TAGCTCAGGGGAGGTGAAGAAAGCCTACCGCAAAAAGGCCTTGTATTGGC
ACCCGGTGAGTGAGTGTGGTCCGCGATCATCCGCTCTACTACTGCTGTCC
TGCTGCTGCTTGTAGCCTCAGGCCCTCTACCGTCCACCCTTCAGCCTTTT
ACCTCGTTTGTCGGTGGAATTCGCTGCTCCTGTTTTGTTTCTGGTGGCGG
CATTGCTGCTCTATCGCAGCGGGTCGGCGGTCACACATGCACGTGTGTGT
GTGTGGTGTTTTCTAGAACGTTTCTGCTAAATACCTGTAGTCTGGTGGTG
GCGTCATCATGTCTGAGATGAACCGACACATCATCGGCGTCCGGACGTTA
CTTTGCTGTTCACATCATCGGTATCTACCACAGGAGCTCCAGTGGGATCG
CCGGGTCTGCCCGCTGTCACCCCAGTCCAGGAGAGCCTTCGCACTTTGCA
CGTTGACCTCTAGCACTTTGCCGTTCTCGTGGGAGGAGTCTGTCCGCAAC
TCGCTATGTTCATGGTTCTGGTTGAATAACAGGGTGAACATGGGTCACAC
GCAGTCGGGCAACACGAAGCTTGCAGACCGTATGACGCCATCTGATCGGT
TGTCATATTTCCGCCCCCGATCCTGAATCGTCTATTGACGGGGTGGACCC
GATCGTGGTTACAAATTTTCCATATTTTGTATGCCATCAATACTACCCAA
CGAATCCATCTCTATCGAAGAAAGGAGTCCAAAGGTGCATTAGCAATGAA
GTCATACATAGCGTGAGCAATTTCCCTCGTGGAAAGAGGCCGGGCGGTTC
GACCAACGGCCCGCGCACGCAAAGGCACAAAAAGCAAAATAAACTTATTT
AGAAACATAGCCCGTATCCAGCCTGTATTCTTCCCATTCACTGCGAAGGC
TTCAGGACACCCCCTTCGACTGCGGTATTATCTTGAATGGGTGAAGCAGT
CTTTCTTCGATCGTACTTTCATGTATGTTGCCTACAAAAGCAATGCTGCG
TGACACGTGCCAGCAGGTACTTGATTTTTTCTGATCCCTTACTTGAAAAG
CAGGACAATGTCTTCCAACTCCTGCTGCAGCCCCCACGTCGGTACATGTG
TTAGAACCCGTAGTCTACAATACACACTTGATTAGCAAGCGTGTTCGCCT
TTTTTTCTTCCGCCACAAGAATGACTTACTTTTCTTCTTTGGCCAGCCGG
TTAGCGCGGTCGATACTACCGAGCAAAGGGCACCCACAATTGAGATACTT
GTACATCGAACACGTCACGTGCGGTCGATACTAGCAGTAAAGACACGCAC
GTCCGGAAAGCTCATCCCTCCGTTTCCGACACCTCCAACGGCGGTCGACA
GAGGGGGAACAACCTCTCGTTTGAACATACCATACAAGTAACAACCAGTT
ACATGCAAGTGACCAACAAGGAAAGTAACAATACAAGGATCTCTTCTCCT
CTGTTACTCCTCTCCCATCCAAAAAGCTACACGATAACATCAACCCCGTC
CCCTGTCTGCGACCCCCCGCACCTCCGCCGTTTTACTTTTCTCAGGATAA
GAACCCCAACAACAGGGAACAGGCTACGGAGATGTTTCGGCTCGTTTCGG
AGGTGATCTTGAATATGTGGCGCTGTACATGTATGCACCTTCTGCCGCAG
CTTCATGCAGTATAATAGTGGCATTGGAAGTGTTTACTCTTGAACTGCTC
ATGTTCGATCGCATCTTTTGCCGCAGTTTTGTGTAGTGCCATCGGGGATG
CTTAATGCCTTGGGGTGTTGGTTCATTTTTGTCAGATGTTTCTGGCTAGG
GAGGAAGACCCGTGGAGCAGTGGACCGCCTACGCCGGTTGTTAAGATTAC
AGAGAAAAAGAGTAGGGAGGGGGCACGCAGACCCTATCCCCTAACCCTAA
CGCTAATCCCAAAGTACGGATTGAATACTTTGTCCCACAATTATCCCACA
AGTTTTCTTAATCATTTATGCTGCGTAGACGGTACTGGGAGTAGGTAGAG
AATGCCCTGAGCATAGCGGGTCAATAGAAAGGGAAGGCGTGGACCACTTT
TGCAACAACGAGAGACCTGAGACACTCACTCATTCACAAGTTATTGGAGT
TGTTTAGGCGTTTTTTTTCCTTCTTTTTTTGTGCTTTTCAGGGTCAGCGT
GGACGGTGTGTAACGGTACGGTGCAAGGCACCCCATTTTTTTTTTTCAAC
AGCACATTTTGCGATTTTCGGAGTTCCTAGATACGTAAAAGCAGCGCAGT
TTTTAGTCATCGCCCAAGAAAGCGCAGCCCGATTGTGGGTTGAATGACGT
GTTCGAAAACGATTTAACCGGTAACCTCTTCCTCCCCCCCAAGGATTACG
CGCCTGTACAAAGCGCACGTCGCGCGAAAAGAGAGATCAGTGAGAATCTA
GGCAGCCATGGCCCTGACAACGTACCCGCCGTTACCCTATCGTGGTGGCC
GCCCTCAAGCGATAGGCCGAGTCTCGTTGCTGTTGGTGTTGTTGTTTTCG
TTGCTGCTGCTGCTGCTGCTGCTGCTCCTACTATTGTCGCCACCCCCCTC
ACTGTGTCGTTGTTGCTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGGT
GCTGCTGGTGTCTGTTCGATGTTCAGGCGTACGAGGTCCTGGGTGACCAG
GAGAAGAAGAGGTTCTACGACACGTACGGGCACGAAGGCGTTGCTAGCGC
CGAACAGCAGCAATCGGCGGGAGGGGCAGGAGCCTCCGGTGCTCAATGGG
TGAGCAGCGGCGAGGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10064:823..3642-

>mRNA_Ecto-sp13_S_contig10064.88.1 ID=mRNA_Ecto-sp13_S_contig10064.88.1|Name=mRNA_Ecto-sp13_S_contig10064.88.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10064:823..3642- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGTAAACCTTGCCACTATGAGGTGCTGGGGCTAGCGCGGAGCGC
TAGCTCAGGGGAGGTGAAGAAAGCCTACCGCAAAAAGGCCTTGTATTGGC
ACCCGGATAAGAACCCCAACAACAGGGAACAGGCTACGGAGATGTTTCGG
CTCGTTTCGGAGGCGTACGAGGTCCTGGGTGACCAGGAGAAGAAGAGGTT
CTACGACACGTACGGGCACGAAGGCGTTGCTAGCGCCGAACAGCAGCAAT
CGGCGGGAGGGGCAGGAGCCTCCGGTGCTCAATGGGTGAGCAGCGGCGAG
GAGTAG
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