mRNA_Ecto-sp13_S_contig1092.820.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1092.820.1
Unique NamemRNA_Ecto-sp13_S_contig1092.820.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: D7G001_ECTSI (Coiled-coil flagellar protein, move backward only 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G001_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 8.450e-62
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRT AEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIR PKPREIEI
Sbjct:  125 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTMAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRMPKPREIEI 223          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A7S2UV02_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV02_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.250e-23
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAP---IPPSMVRTTAEPRPNAYIPDE-LGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            RAEH EPPTE A  +  R E++ +     RL               +P  + RTTAEPRPNAYIPD+ LG+PKPYG   PFKPTE G+TMRHIR P P++IEI
Sbjct:   33 RAEHDEPPTEEAEKEWQRSEREMLEREETRLMAENTXXXXXXXXXAMPDQVNRTTAEPRPNAYIPDDALGLPKPYGKLAPFKPTETGSTMRHIRVPNPKDIEI 135          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A7S3XQY0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQY0_HETAK)

HSP 1 Score: 102 bits (255), Expect = 7.520e-23
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIP-DELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            R EH EPP+ AA  + +RLE+  +     +L +A    +G  P P ++ RTTAEPRPNAYIP D LG+P+PYG   PFKPTE G+TMRH+R P+ REIEI
Sbjct:  492 RFEHDEPPSAAAEREWHRLERHRLDREEAQLLQASQVAAG--PTPATVGRTTAEPRPNAYIPEDNLGLPRPYGAAAPFKPTEAGSTMRHVRPPREREIEI 589          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A7R9VC78_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VC78_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 8.440e-23
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            R + G PPTE A  + YR+E+  +  S    ERAE     ++ +  S V+TTAEPRPNAYIP+ LGIPKPYGG  PFKPT+ G TMRHIRKP+ +EI I
Sbjct:  822 RVDAGLPPTEDAEREWYRMERSRMQLSEALSERAEERALLDSKV--SDVQTTAEPRPNAYIPESLGIPKPYGGFAPFKPTDAGATMRHIRKPEIKEIVI 918          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A7S3HFN2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFN2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.550e-22
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            R EHGE P+E AV DL R ++K +  +   L+R E     +   P  M++T AEPRP AYIPDELGIP+PYG   PFKP++ G +MRHIR P+ + IEI
Sbjct:  150 RFEHGEAPSEEAVKDLSRQDRKKIMLAELALQRQEEALLEQ---PAGMLKTAAEPRPTAYIPDELGIPRPYGNAAPFKPSDLGASMRHIRPPQIKPIEI 245          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: Q8S4W6_CHLRE (Coiled-coil flagellar protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=Q8S4W6_CHLRE)

HSP 1 Score: 101 bits (251), Expect = 2.920e-22
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            R E GEPPT+ A  + YRLE++         ER     + +A +  + V++TAEPRPNAYIP++LGIPKPYG   PFKP E G+TMRHIRKP P+E+ I
Sbjct:  824 RLEAGEPPTDDAEREWYRLERERHTVDAMAEERRAVAAALDARV--AEVQSTAEPRPNAYIPEQLGIPKPYGSFAPFKPQEAGSTMRHIRKPSPKEVVI 920          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A7S1U464_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U464_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.920e-22
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAA-STQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDEL--------GIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            R EHG+ PTE A   LYRLE+  + A S   ++++     G    P +++R+TAE RPNAYIPD +        GIP+PYGG  PFKP E GTTMRHIR+P+P+EIEI
Sbjct:  828 RVEHGQAPTEDAERTLYRLERDRLTAKSMAMMDQSNMAIPGSMQQPNNILRSTAEARPNAYIPDGINQPARQPDGIPRPYGGFAPFKPQEAGTTMRHIRQPEPKEIEI 935          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A061QLY2_9CHLO (Coiled-coil flagellar move backward only 2 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QLY2_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 7.410e-22
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            R E GEPPTE A  + +R +++    + Q L+ A  E    A    ++V+TTAEPRPNAYIP+ LGIPKP+G   PFKP E G+TMRHIRKP+P+E+ I
Sbjct:  834 RLERGEPPTEEAEREWFRKQRERF--TLQVLQEAAQEAKKVAESSGAVVQTTAEPRPNAYIPENLGIPKPFGSYAPFKPQEPGSTMRHIRKPQPKEVVI 930          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A2J8AHF8_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AHF8_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 1.350e-21
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 RAEHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            R E GEPPT  A  + YR+E++     +   +R     + +A +  S V++TA+PRPNAYIP+ LGIPKPYGG  PFKP E G+TMRHIRKP+P+E+ I
Sbjct:  646 RLEAGEPPTGDAEREWYRMERERKTVGSLAEDRRAISAAMDARV--SEVQSTADPRPNAYIPENLGIPKPYGGFSPFKPQEPGSTMRHIRKPQPKEVVI 742          
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Match: A0A0M0K1I6_9EUKA (Coiled coil flagellar protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1I6_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.370e-21
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 3
Query:    9 EHGEPPTEAAVWDLYRLEQKSVAASTQRLERAEAETSGEAPIPPSMVRTTAEPRPNAYIPDELGIPKPYGGQGPFKPTEGGTTMRHIRKPKPREIEI 299
            E G  PTE    ++ R  Q+  A   +R+  A A++  +   P  +  TTAEPRPNAYIPD++GIPKPYG   PFKPTE GTTMRHIRKP PREIE+
Sbjct:  795 EQGAAPTE----EMEREWQRYEAELDRRVSDAYAKSVLQETAPAQLTHTTAEPRPNAYIPDDIGIPKPYGALAPFKPTELGTTMRHIRKPNPREIEL 887          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1092.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G001_ECTSI8.450e-6297.98Coiled-coil flagellar protein, move backward only ... [more]
A0A7S2UV02_9STRA6.250e-2352.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XQY0_HETAK7.520e-2354.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9VC78_9CHLO8.440e-2355.56Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S3HFN2_9STRA1.550e-2251.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
Q8S4W6_CHLRE2.920e-2252.53Coiled-coil flagellar protein n=3 Tax=Chlamydomona... [more]
A0A7S1U464_9STRA2.920e-2250.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A061QLY2_9CHLO7.410e-2252.53Coiled-coil flagellar move backward only 2 n=3 Tax... [more]
A0A2J8AHF8_9CHLO1.350e-2151.52Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A0M0K1I6_9EUKA1.370e-2154.64Coiled coil flagellar protein n=1 Tax=Chrysochromu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1092contigEcto-sp13_S_contig1092:13812..14606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size410
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.4438736-UTR-Ecto-sp13_S_contig1092:13811..138831681462563.4438736-UTR-Ecto-sp13_S_contig1092:13811..13883Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1092 13812..13883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462563.4534314-CDS-Ecto-sp13_S_contig1092:13883..140731681462563.4534314-CDS-Ecto-sp13_S_contig1092:13883..14073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1092 13884..14073 -
1681462563.461657-CDS-Ecto-sp13_S_contig1092:14460..146061681462563.461657-CDS-Ecto-sp13_S_contig1092:14460..14606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1092 14461..14606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1092.820.1prot_Ecto-sp13_S_contig1092.820.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1092 13884..14606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1092.820.1

>prot_Ecto-sp13_S_contig1092.820.1 ID=prot_Ecto-sp13_S_contig1092.820.1|Name=mRNA_Ecto-sp13_S_contig1092.820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
GGLSTGSHQPRRPSGTCTASSKRALQPARRGLRERRRRLPERRRYHRPWS
ARRRSPDRTPTSRTSWGSPSRTAGKGRSSQRKGAQRCGTSASPSRERSRF
SGELHDVPPHL*
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mRNA from alignment at Ecto-sp13_S_contig1092:13812..14606-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1092.820.1 ID=mRNA_Ecto-sp13_S_contig1092.820.1|Name=mRNA_Ecto-sp13_S_contig1092.820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1092:13812..14606- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGCTGAGCACGGGGAGCCACCAACCGAGGCGGCCGTCTGGGACCTG TACCGCCTCGAGCAAAAGAGCGTTGCAGCCAGCACGCAGAGGCTTGAGAG AGCGGAGGCGGAGACTTCCGGAGAGGCGCCGATACCACCGTCCATGGTAA CCACGACTGACTGGCTGTGAAAAAACAATATCGGGTAGACTGCCGAGAGG CAACTCAATAGATTGCAAAGTCAGTTTCATAACGCAAAAGGAGTGTGGTC TGTTTTGTCGGAGATGATTAACGAAGGAGAATTCGAGCATATGCATACCA CTACAGTACACCATGAATCCAGTGCTACTTCAATACCAGTCTCTTTATCC GTGAAGGGGGTGGAGGCTTTGTTGTGTCATATACATGAGGAAAGTAGAAA AAATAGATGACTTCCAAGATCAATGTTTTGGTCGATGTTACTGGTCACGG TAGTCTACTTCTTCTTGCCTCGCGCACCAGCTCTAGATACGAAGTATATC TCATGTGCACCTTGATATTAAACGTTGCGCCAGGTCCGCACGACGGCGGA GCCCCGACCGAACGCCTACATCCCGGACGAGCTGGGGATCCCCAAGCCGT ACGGCGGGCAAGGGCCGTTCAAGCCAACGGAAGGGGGCACAACGATGCGG CACATCCGCAAGCCCAAGCCGCGAGAGATCGAGATTTAGTGGAGAACTTC ACGACGTCCCACCTCACTTGTGACCGTTTCAGCCTCACGTCGAAGTTTTC GTCTGTTTTCGAATATTTCTTTTTGTCACGTCTGCTGTTTTTATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1092:13812..14606-

>mRNA_Ecto-sp13_S_contig1092.820.1 ID=mRNA_Ecto-sp13_S_contig1092.820.1|Name=mRNA_Ecto-sp13_S_contig1092.820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1092:13812..14606- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGCTGAGCACGGGGAGCCACCAACCGAGGCGGCCGTCTGGGACCTG
TACCGCCTCGAGCAAAAGAGCGTTGCAGCCAGCACGCAGAGGCTTGAGAG
AGCGGAGGCGGAGACTTCCGGAGAGGCGCCGATACCACCGTCCATGGTCC
GCACGACGGCGGAGCCCCGACCGAACGCCTACATCCCGGACGAGCTGGGG
ATCCCCAAGCCGTACGGCGGGCAAGGGCCGTTCAAGCCAACGGAAGGGGG
CACAACGATGCGGCACATCCGCAAGCCCAAGCCGCGAGAGATCGAGATTT
AGTGGAGAACTTCACGACGTCCCACCTCACTTGTGA
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