mRNA_Ecto-sp13_S_contig1006.81.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1006.81.1
Unique NamemRNA_Ecto-sp13_S_contig1006.81.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: D8LSX5_ECTSI (Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX5_ECTSI)

HSP 1 Score: 605 bits (1560), Expect = 2.190e-209
Identity = 371/673 (55.13%), Postives = 383/673 (56.91%), Query Frame = 1
Query:   40 MIAVEPAAPGAVLRADAGGSTTSGVLGLHQLQPDVTEQTEDNSSLLLTAAASPHQHVGVAATRDFATSRATSDQADTQDAGLGRKGKHRHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLVRRPRPKDRKHSQQQTKALAQTGNGDDKARRETRSTIGRQPAVGRAHHEVWRRGEAQKARLRGGGSLALKXXXXXXXXQARFYAQVGHNASQEGSGSSGEADWGHGGPFAVGVREMGSSGVNHGMARVGEGGERGGGNTPSPSAGRTELASEGGFTERRHGREKGSVVAAKQXXXXXXXXXXXXXXXXXXXXXTHSDNAVGDYDDXXXXXXXEPIIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSGTSDGVSAAAIAGGRWQGSNSNLSAADGQDGGGHMATAAGITTTAGPEMCPDGCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYRHGMTSCSECGSPDNFPDIVVSVAVAPPPGHGGEAPGRRRPMKSTHGDSEVGIITDGRKHNR 2058
            MIAVEPAAPGAVLRADAGGST SGVLGL QLQP+VTE+T D+ SLLLT A SPHQH  VAA+RDF  SRATSD+ADTQDAGLGRK  HRHRQQQNQYRV+LENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGR FSNRYDSGSVEGSVIKESM IGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTF QLLQEQFGGTGDLFSVYLT +                                                                                                                                                   GGERGGG  PSPS GR ELASEG F +RRHG  KGS VAAKQ                                                                                                  SNLSAADGQDGGGH A  AGI TTAGPEMCPDGCQAIVDTGSSLLVPPR QYREVM+QIIGGRADCRYR+GMTSCSECGSPD+FPDIV+SVAVAP            RPMKS HGDSE GII DGRKHNR
Sbjct:    1 MIAVEPAAPGAVLRADAGGST-SGVLGLRQLQPNVTEETVDDRSLLLTEAGSPHQHFDVAASRDFVKSRATSDEADTQDAGLGRK--HRHRQQQNQYRVVLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRNFSNRYDSGSVEGSVIKESMVIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFAQLLQEQFGGTGDLFSVYLTRA---------------------------------------------------------------------------------------------------------------------------------------------------GGERGGGGLPSPSTGRMELASEGSFIKRRHGTAKGSAVAAKQ--------------------------------------------------------------------------------------------------SNLSAADGQDGGGHTAATAGIVTTAGPEMCPDGCQAIVDTGSSLLVPPRSQYREVMRQIIGGRADCRYRYGMTSCSECGSPDDFPDIVISVAVAPXXXXXXXXXXXXRPMKSVHGDSEAGIINDGRKHNR 425          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A6H5L1Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q3_9PHAE)

HSP 1 Score: 421 bits (1082), Expect = 1.880e-135
Identity = 236/278 (84.89%), Postives = 243/278 (87.41%), Query Frame = 1
Query: 1204 MGSSGVNHGMARVGEGGERGGGNTPSPSAGRTELASEGGFTERRHGREKGSVVAAKQXXXXXXXXXXXXXXXXXXXXXTHSDNAVGDYDDXXXXXXX-EPIIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSGTSDGVSAAAIAGGRWQGSNSNLSAADGQDGGGHMATAAGITTTAGPEMCPDGCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYRHGMTSCSECGSPDNFPDIVVSVAVAPPPGHGGEAPGRRRPMKSTHGDSEVGII 2034
            MGSSGVNHGMARVG GGERGGG+ PSPSAGRTELASEG F ERRHGREKGS VAAKQ  XXXXXXX             H+ NAVGDYD XXXXXXX EP+IVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTS TSD VS AA+AGGRWQ S SNLSAADGQDGGGH AT AGIT TAGPEMCP+GCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYR+GMTSCSECGSPD+FPDIVVSVAVAPPPGHGG AP RRRPMKS HGD EVGII
Sbjct:    1 MGSSGVNHGMARVGAGGERGGGDPPSPSAGRTELASEGSFAERRHGREKGSAVAAKQRGXXXXXXXMGETTERKDTGHAHAHNAVGDYDXXXXXXXXXEPVIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSSTSDVVSTAAMAGGRWQRSISNLSAADGQDGGGHTATTAGITITAGPEMCPEGCQAIVDTGSSLLVPPRGQYREVMKQIIGGRADCRYRYGMTSCSECGSPDDFPDIVVSVAVAPPPGHGGGAPARRRPMKSAHGDGEVGII 278          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A1V9ZY28_9STRA (Aspartyl protease family A01A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY28_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.390e-33
Identity = 78/186 (41.94%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  304 RHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RH    N   + LEN  NVQY G    G PPQ + ++FDTGSSDTW+P +GCTSCG+H+ FD   SST      KF + Y SG V G + ++++ +G   V  V  G+V  + + +Q F ADG+VGLAF S++    T P+    F  L+Q+      ++F+ Y+TP P + GS +  GGYDL +V
Sbjct:   26 RHLNASNIPEIPLENYGNVQYVGRIAFGTPPQNLSVVFDTGSSDTWIPGIGCTSCGVHAAFDYSESSTFEDTTEKFIDAYGSGEVGGVIAQDTIGMGPFQVNNVRFGVVTEETRSLQMFIADGLVGLAFESLAKI--TRPT---LFSMLIQDN-PSLENMFAFYMTPDPTRLGSELHIGGYDLSIV 205          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A6A4ZQ35_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZQ35_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.840e-33
Identity = 75/177 (42.37%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L+N  NVQY G+   G+PPQ + ++FDTGSSDTW+P + CT CGLHS FD   SST      KF + Y SG V G +  +++  G   V  V  G+V  + + +  F ADG+VGL F S++      P+  ST    L  Q     ++F++Y+T  PNQ GS +  GGYDL +V
Sbjct:   33 RVRLQNYGNVQYVGELSFGSPPQVLTVVFDTGSSDTWIPGMSCTECGLHSAFDYTQSSTFQDTHEKFLDSYGSGEVGGVIGVDTIGFGPFVVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISR--PTLFST----LAAQNADVNNMFAMYMTAEPNQDGSELHLGGYDLSMV 203          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: W4G0A3_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0A3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.370e-33
Identity = 76/177 (42.94%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L+N  NVQY G+   G+PPQ + ++FDTGSSDTW+P + CT CGLHS FD   SST      KF + Y SG V G +  +++  G   V  V  G+V  + + +  F ADG+VGL F S++      P+  ST    L  Q  G  ++F++Y+T  PNQ GS +  GGYDL +V
Sbjct:   61 RVQLQNYGNVQYVGELSFGSPPQVLTVVFDTGSSDTWIPGMSCTECGLHSAFDYTQSSTFQDTHEKFLDSYGSGEVGGVIGVDTIGFGPFVVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISR--PTLFST----LAAQNAGVNNMFAMYMTAEPNQDGSELHLGGYDLSMV 231          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: T0R407_SAPDV (Peptidase A1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R407_SAPDV)

HSP 1 Score: 142 bits (357), Expect = 1.630e-32
Identity = 73/176 (41.48%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  334 VLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            V LEN  NVQY G+   G+P Q + ++FDTGSSDTWVP++ CT+CG+H+ FD   SST  +   +F + Y SG+V G +  +++ +G   + K   G+V  + + ++ F ADG+VGLAF S++    T P+    F QL+Q+     G++F+ Y+TP P   GS +  GGYDL +V
Sbjct:   38 VPLENYGNVQYVGELAFGSPQQNLSVVFDTGSSDTWVPSIDCTTCGVHAAFDAGLSSTYHSANEQFMDAYGSGAVRGVIGVDTIGLGPFTIPKARFGVVTSETKALELFIADGLVGLAFESLAKI--TRPT---LFSQLIQDN-PKLGNMFAFYMTPDPTTLGSQLHLGGYDLSVV 207          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A6G0XMZ7_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMZ7_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.660e-32
Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            R+ L+N  NVQY G+   G PPQ + ++FDTGSSDTW+P + CTSCG+H  FD   S+T      KF + Y SG V G +  +++  G   V+ V  G+V  + + ++ F ADG+VGL F S++    T P+  ST VQ    Q    G++F+VY++  P + GS +  GGYDL +V
Sbjct:   45 RLPLQNYGNVQYVGELSFGTPPQVLTVVFDTGSSDTWIPGISCTSCGMHEDFDYTQSTTFQDTREKFLDSYGSGEVGGVIGIDTIGFGPFNVENVRFGVVTEETESLEMFIADGLVGLGFESLAKI--TRPTLFSTLVQ----QNDAVGNMFAVYMSAEPYKTGSELHLGGYDLSMV 215          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A1V9Z503_9STRA (Aspartyl protease family A01A n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z503_9STRA)

HSP 1 Score: 140 bits (352), Expect = 6.880e-32
Identity = 71/176 (40.34%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  334 VLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            + LEN  NVQY G    G PPQ + ++FDTGSSDTW+P + CTSCG+H+ FD  AS + +    KF + Y SG V G +  +++ IG   V+    G+V  + + ++ F ADG+VGLAF S++       S+ + F QL+ +     G++F+ Y+TP P + GS +  GGYDL + 
Sbjct:   34 IPLENYGNVQYVGSIAFGEPPQNLSVVFDTGSSDTWIPGLDCTSCGVHATFDYSASPSFIDTEEKFIDAYGSGEVGGVIGIDTIGIGPFTVRNARFGVVTEETRALEMFIADGLVGLAFESLAKI-----SRPTLFAQLILDN-PDLGNMFAFYMTPDPTKLGSELHLGGYDLSVA 203          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A024UDB4_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UDB4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.770e-31
Identity = 71/177 (40.11%), Postives = 99/177 (55.93%), Query Frame = 1
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L+N  NVQY G+   G+PPQ + ++FDTGSSDTW+P + C  CG HS FD   S+T +    KF + Y SG V G V  +++  G   V  V  G+V  + + +  F ADG+VGL F S++           T    L   F    ++F++Y+T  PNQ GS +  GGYDL +V
Sbjct:   62 RVKLQNYGNVQYVGELSFGSPPQMLTVVFDTGSSDTWIPGISCAECGFHSAFDYTQSTTFIDTHEKFLDSYGSGEVGGVVGVDTIGFGPFRVPNVRFGVVTEETESLGMFIADGLVGLGFESLAKISRP------TLFTTLASHFTEVRNMFAMYMTAEPNQEGSELHLGGYDLSVV 232          
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Match: A0A5D6Y386_9STRA (Peptidase A1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y386_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.640e-31
Identity = 74/177 (41.81%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  331 RVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPAVGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGMAVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQLLQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLV 861
            RV L N  NVQY G    GNPPQ M ++FDTGSSDTWVP   C SCG HS F    S+T +    KF + Y SGSV G++  +++ +G   V+ V+ G+V  + +++Q F ADG+ GL F  ++       S+ + F QL Q+      D+F+ +LTP   + GS +  GGYDL +V
Sbjct:   60 RVPLRNYGNVQYIGRVAFGNPPQPMDMVFDTGSSDTWVPGDSCASCGAHSRFQHALSTTFLDTQAKFFDAYGSGSVAGTIAVDTITLGAFRVESVKFGVVSEETEKLQVFIADGLFGLGFDGLAHI-----SRPTLFAQLAQQN-PEIDDMFAFFLTPEAYERGSELHIGGYDLSVV 230          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1006.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSX5_ECTSI2.190e-20955.13Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L1Q3_9PHAE1.880e-13584.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9ZY28_9STRA1.390e-3341.94Aspartyl protease family A01A n=1 Tax=Thraustothec... [more]
A0A6A4ZQ35_9STRA1.840e-3342.37Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
W4G0A3_9STRA3.370e-3342.94Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
T0R407_SAPDV1.630e-3241.48Peptidase A1 domain-containing protein n=2 Tax=Sap... [more]
A0A6G0XMZ7_9STRA3.660e-3241.24Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
A0A1V9Z503_9STRA6.880e-3240.34Aspartyl protease family A01A n=1 Tax=Achlya hypog... [more]
A0A024UDB4_9STRA1.770e-3140.11Peptidase A1 domain-containing protein n=1 Tax=Aph... [more]
A0A5D6Y386_9STRA2.640e-3141.81Peptidase A1 domain-containing protein n=1 Tax=Pyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1006contigEcto-sp13_S_contig1006:946..4180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score612.5
Seed ortholog evalue2.5e-172
Seed eggNOG ortholog2880.D8LSX5
Model size2112
KEGG koko:K01382
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
Ec32 ortholog descriptionpepsinogen
Ec32 orthologEc-26_001770.1
EC3.4.23.34
Cds size2112
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.0843706-CDS-Ecto-sp13_S_contig1006:945..22551681462504.0843706-CDS-Ecto-sp13_S_contig1006:945..2255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1006 946..2255 -
1681462504.0957701-CDS-Ecto-sp13_S_contig1006:2741..30041681462504.0957701-CDS-Ecto-sp13_S_contig1006:2741..3004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1006 2742..3004 -
1681462504.1052773-CDS-Ecto-sp13_S_contig1006:3340..34711681462504.1052773-CDS-Ecto-sp13_S_contig1006:3340..3471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1006 3341..3471 -
1681462504.1152558-CDS-Ecto-sp13_S_contig1006:3772..41801681462504.1152558-CDS-Ecto-sp13_S_contig1006:3772..4180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1006 3773..4180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1006.81.1prot_Ecto-sp13_S_contig1006.81.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1006 946..4180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1006.81.1

>prot_Ecto-sp13_S_contig1006.81.1 ID=prot_Ecto-sp13_S_contig1006.81.1|Name=mRNA_Ecto-sp13_S_contig1006.81.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=704bp
MIHSVSAFVAVCCMIAVEPAAPGAVLRADAGGSTTSGVLGLHQLQPDVTE
QTEDNSSLLLTAAASPHQHVGVAATRDFATSRATSDQADTQDAGLGRKGK
HRHRQQQNQYRVLLENVDNVQYFGDAMIGNPPQRMKILFDTGSSDTWVPA
VGCTSCGLHSGFDDVASSTAVAMGRKFSNRYDSGSVEGSVIKESMAIGGM
AVKKVEMGLVKRQGQRIQGFKADGIVGLAFPSISTTQNTSPSQHSTFVQL
LQEQFGGTGDLFSVYLTPSPNQPGSMVIFGGYDLDLVRRPRPKDRKHSQQ
QTKALAQTGNGDDKARRETRSTIGRQPAVGRAHHEVWRRGEAQKARLRGG
GSLALKQQQQQQQAQARFYAQVGHNASQEGSGSSGEADWGHGGPFAVGVR
EMGSSGVNHGMARVGEGGERGGGNTPSPSAGRTELASEGGFTERRHGREK
GSVVAAKQRGAAAAAKEIGETRERKDTGHTHSDNAVGDYDDDDDDDDDEP
IIVWTPVVEYRGSLSYWTVQLTGWRTETATDGSNTSGTSDGVSAAAIAGG
RWQGSNSNLSAADGQDGGGHMATAAGITTTAGPEMCPDGCQAIVDTGSSL
LVPPRGQYREVMKQIIGGRADCRYRHGMTSCSECGSPDNFPDIVVSVAVA
PPPGHGGEAPGRRRPMKSTHGDSEVGIITDGRKHNRRRTGGGGGGGRGGG
GGGG
back to top

mRNA from alignment at Ecto-sp13_S_contig1006:946..4180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1006.81.1 ID=mRNA_Ecto-sp13_S_contig1006.81.1|Name=mRNA_Ecto-sp13_S_contig1006.81.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1006:946..4180- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACATTCAGTCTCAGCCTTCGTTGCTGTCTGCTGTATGATAGCGGT AGAACCAGCGGCACCTGGAGCTGTGTTACGTGCCGATGCTGGTGGAAGCA CCACCAGCGGAGTGCTTGGTCTACACCAGCTACAACCCGACGTGACGGAG CAGACGGAAGACAACAGCAGCCTGTTACTGACGGCAGCCGCATCGCCCCA TCAACATGTCGGCGTTGCTGCCACGAGAGATTTCGCGACAAGTCGGGCTA CGAGCGACCAAGCGGATACCCAGGATGCTGGCCTTGGGCGCAAGGGGAAA CATCGACACCGGCAGCAACAGAATCAATACCGGGTGCTCCTCGAAAACGT GGACAACGTGCAGTATTTCGGCGACGCAATGATCGGGAACCCTCCGCAAC GCATGAAGGTGGGCTGTTGACTACGTGGGAATTCCAACATATGGTACATA CAGCAGTTGTGGGATAAGTTGTCCGGCTCGTCCACCGTAGACTTACAAGC TTGACGCTAAGTCTAACTACGACACAAGATGGATTCTGATGTGTACATGT ACGTACAGTAGTACTGGATATTTATGGTAGGAACTGTTGAACTAGGTCGA TCATGCATTTCTTCTCCCAGTCATCGAACCATTCTCGTAAAAGTGAAGGT CGTTCCTTTTTCTTTGCTTCTGCTGGCGGTTTTTCCCCCCCTTTGCTACC TCTCGCAAGATCCTGTTTGACACTGGGAGCTCCGACACGTGGGTGCCCGC GGTCGGTTGCACAAGTTGCGGTTTGCATTCCGGGTTTGACGACGTCGCAT CTTCGACAGCCGTGGCCATGGGCAGGAAGTTCAGCAACAGGTTGGTTTTA GGTGTCATTGAGTTTGGAGCACGTGTTTGTGGGCTCATAGTTAGAGGTTG TAGTCGGTTGGAGAGCTACGAACTCTCTACACTTGCGATTTGTCAGGTGT CCTCACTTTCAGCAACGACGATGGAAGTGGGGCACGTGTAGGATAACGTG GACAGGAGTGACAGTTTGATCTGGTGATACCAGAGAGAGGTGGGAAGAGT ACGTGAGACGAGAGGGGCGAGGGCGGACAGCCGACTCGACCGTCGAGGTT ACCGAAAGAAGTACACCTCTTGATAGAAAACAGAGAAGCTCACCGATACT ACGTGGACATTTTTTCACGGTGACAGGTACGACAGCGGTTCGGTTGAAGG AAGCGTGATCAAGGAAAGCATGGCCATCGGCGGTATGGCGGTCAAGAAGG TGGAAATGGGCTTGGTGAAGCGCCAAGGGCAGCGCATCCAGGGCTTCAAG GCGGACGGCATCGTAGGCCTAGCGTTCCCGTCCATCTCCACGACTCAAAA CACCAGCCCGTCGCAGCACTCCACCTTCGTGCAGCTGCTGCAAGAGCAGT TCGGGGGGACCGGTGACCTGTTCTCCGTCTACCTCACTCGTGAGTCTCAT GGTCTGACACCGCACAAGAAGCAACTCTATTCGATCGGTGCCACCTTGTT CTTGGCATGTTCGTTCTACACTCTTGTGTATGTGGTCGACCAACGATGAT TTCGCGGCACACACTTTTGGTTCGGCGAGGGAGCTCCACGTGATCGATCG ACCTGACCCAGTGCACCACACCACGTTCACGCTTTCAGAATCCTTGATAC AATTTCCTCATTTGCAAAACAGCAACACAGGGTTCAGCTTACCCATCATT TCAAGCAAAAAAAAACGGACTGGTAATGTGTATGTACCGTCGGCAGGCCT TCACTTGCTGCTGTACCGCCGCCTCATAAATTTGCAGTTGTCGTTTTCGT CTTGCGTCGCGTCTGCGTACGGTCCGACTCTCCCGGAAATGATTGTTTTA TTCTTTCGTCGCGTACGCTGCCTCGTCCCCCCGCGCGCACCTGACTACAT CTACTGGGTGCCTCGCCCAACGCAGCGTCTCCAAATCAACCCGGTAGCAT GGTCATTTTCGGAGGCTACGATCTTGACCTGGTGCGTAGACCGAGACCGA AGGACAGGAAGCACAGCCAACAGCAGACGAAGGCTCTTGCACAAACGGGA AACGGCGACGATAAAGCTCGCAGAGAGACGAGGAGCACCATCGGTAGACA GCCGGCTGTGGGGAGGGCGCACCACGAGGTCTGGCGAAGAGGCGAGGCTC AAAAGGCGAGGCTTCGCGGCGGAGGTAGTCTGGCGCTGAAGCAGCAGCAG CAGCAGCAGCAAGCTCAAGCTCGATTTTATGCTCAAGTTGGTCATAACGC CTCGCAGGAGGGGAGTGGCTCAAGCGGCGAGGCGGATTGGGGCCATGGTG GTCCCTTTGCAGTTGGCGTAAGGGAAATGGGTAGTAGCGGCGTTAACCAT GGTATGGCGCGAGTAGGAGAAGGAGGCGAGAGGGGAGGCGGCAATACACC TTCTCCCTCCGCCGGGAGGACGGAGCTAGCTTCAGAGGGGGGCTTCACCG AGAGGCGCCACGGGAGAGAGAAGGGTAGCGTGGTGGCGGCAAAGCAAAGG GGAGCCGCGGCGGCGGCGAAAGAAATAGGTGAAACTAGAGAACGTAAGGA TACAGGGCATACACATTCGGACAACGCCGTCGGTGACTACGACGACGATG ATGATGACGACGACGACGAGCCTATCATCGTCTGGACCCCAGTGGTAGAG TACCGGGGATCGCTGAGCTACTGGACGGTGCAGCTCACGGGGTGGCGAAC CGAGACGGCCACAGACGGCAGCAACACCAGCGGCACCAGCGATGGCGTCT CCGCGGCCGCCATAGCCGGCGGCCGGTGGCAAGGCAGCAACAGCAACCTC AGCGCCGCGGATGGGCAAGACGGCGGCGGTCACATGGCGACGGCGGCGGG GATCACCACCACCGCCGGTCCCGAGATGTGCCCGGACGGGTGCCAGGCCA TCGTTGACACGGGGTCATCCCTCCTGGTACCGCCGAGGGGCCAGTACCGC GAGGTGATGAAGCAGATCATCGGCGGCAGGGCGGACTGCCGGTACCGACA CGGGATGACGTCGTGCTCCGAGTGCGGCAGCCCAGACAACTTCCCCGACA TCGTTGTCTCCGTTGCTGTGGCCCCGCCTCCGGGTCACGGAGGGGAGGCA CCAGGGCGGCGGCGGCCCATGAAGAGTACGCACGGCGACAGCGAGGTCGG TATCATCACCGACGGAAGGAAACACAACAGGCGGCGGACGGGTGGCGGTG GCGGTGGCGGTAGAGGAGGAGGAGGAGGAGGAGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1006:946..4180-

>mRNA_Ecto-sp13_S_contig1006.81.1 ID=mRNA_Ecto-sp13_S_contig1006.81.1|Name=mRNA_Ecto-sp13_S_contig1006.81.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2112bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1006:946..4180- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACATTCAGTCTCAGCCTTCGTTGCTGTCTGCTGTATGATAGCGGT
AGAACCAGCGGCACCTGGAGCTGTGTTACGTGCCGATGCTGGTGGAAGCA
CCACCAGCGGAGTGCTTGGTCTACACCAGCTACAACCCGACGTGACGGAG
CAGACGGAAGACAACAGCAGCCTGTTACTGACGGCAGCCGCATCGCCCCA
TCAACATGTCGGCGTTGCTGCCACGAGAGATTTCGCGACAAGTCGGGCTA
CGAGCGACCAAGCGGATACCCAGGATGCTGGCCTTGGGCGCAAGGGGAAA
CATCGACACCGGCAGCAACAGAATCAATACCGGGTGCTCCTCGAAAACGT
GGACAACGTGCAGTATTTCGGCGACGCAATGATCGGGAACCCTCCGCAAC
GCATGAAGATCCTGTTTGACACTGGGAGCTCCGACACGTGGGTGCCCGCG
GTCGGTTGCACAAGTTGCGGTTTGCATTCCGGGTTTGACGACGTCGCATC
TTCGACAGCCGTGGCCATGGGCAGGAAGTTCAGCAACAGGTACGACAGCG
GTTCGGTTGAAGGAAGCGTGATCAAGGAAAGCATGGCCATCGGCGGTATG
GCGGTCAAGAAGGTGGAAATGGGCTTGGTGAAGCGCCAAGGGCAGCGCAT
CCAGGGCTTCAAGGCGGACGGCATCGTAGGCCTAGCGTTCCCGTCCATCT
CCACGACTCAAAACACCAGCCCGTCGCAGCACTCCACCTTCGTGCAGCTG
CTGCAAGAGCAGTTCGGGGGGACCGGTGACCTGTTCTCCGTCTACCTCAC
TCCGTCTCCAAATCAACCCGGTAGCATGGTCATTTTCGGAGGCTACGATC
TTGACCTGGTGCGTAGACCGAGACCGAAGGACAGGAAGCACAGCCAACAG
CAGACGAAGGCTCTTGCACAAACGGGAAACGGCGACGATAAAGCTCGCAG
AGAGACGAGGAGCACCATCGGTAGACAGCCGGCTGTGGGGAGGGCGCACC
ACGAGGTCTGGCGAAGAGGCGAGGCTCAAAAGGCGAGGCTTCGCGGCGGA
GGTAGTCTGGCGCTGAAGCAGCAGCAGCAGCAGCAGCAAGCTCAAGCTCG
ATTTTATGCTCAAGTTGGTCATAACGCCTCGCAGGAGGGGAGTGGCTCAA
GCGGCGAGGCGGATTGGGGCCATGGTGGTCCCTTTGCAGTTGGCGTAAGG
GAAATGGGTAGTAGCGGCGTTAACCATGGTATGGCGCGAGTAGGAGAAGG
AGGCGAGAGGGGAGGCGGCAATACACCTTCTCCCTCCGCCGGGAGGACGG
AGCTAGCTTCAGAGGGGGGCTTCACCGAGAGGCGCCACGGGAGAGAGAAG
GGTAGCGTGGTGGCGGCAAAGCAAAGGGGAGCCGCGGCGGCGGCGAAAGA
AATAGGTGAAACTAGAGAACGTAAGGATACAGGGCATACACATTCGGACA
ACGCCGTCGGTGACTACGACGACGATGATGATGACGACGACGACGAGCCT
ATCATCGTCTGGACCCCAGTGGTAGAGTACCGGGGATCGCTGAGCTACTG
GACGGTGCAGCTCACGGGGTGGCGAACCGAGACGGCCACAGACGGCAGCA
ACACCAGCGGCACCAGCGATGGCGTCTCCGCGGCCGCCATAGCCGGCGGC
CGGTGGCAAGGCAGCAACAGCAACCTCAGCGCCGCGGATGGGCAAGACGG
CGGCGGTCACATGGCGACGGCGGCGGGGATCACCACCACCGCCGGTCCCG
AGATGTGCCCGGACGGGTGCCAGGCCATCGTTGACACGGGGTCATCCCTC
CTGGTACCGCCGAGGGGCCAGTACCGCGAGGTGATGAAGCAGATCATCGG
CGGCAGGGCGGACTGCCGGTACCGACACGGGATGACGTCGTGCTCCGAGT
GCGGCAGCCCAGACAACTTCCCCGACATCGTTGTCTCCGTTGCTGTGGCC
CCGCCTCCGGGTCACGGAGGGGAGGCACCAGGGCGGCGGCGGCCCATGAA
GAGTACGCACGGCGACAGCGAGGTCGGTATCATCACCGACGGAAGGAAAC
ACAACAGGCGGCGGACGGGTGGCGGTGGCGGTGGCGGTAGAGGAGGAGGA
GGAGGAGGAGGA
back to top