mRNA_Ecto-sp13_S_contig10906.809.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10906.809.1
Unique NamemRNA_Ecto-sp13_S_contig10906.809.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10906.809.1 vs. uniprot
Match: A0A6H5KAS4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAS4_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 1.770e-96
Identity = 145/149 (97.32%), Postives = 147/149 (98.66%), Query Frame = 1 
Query:    1 MVSATFGEKINTDRIVMDKTAREAVQELYPEACAKHPRFLDEIGHGETRTFTEEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRVTPTDFVVYKDGTVTYRRTFRAVHDGYLTVGDK 447
            MVSATFGEKINTDRIV+DKTAREAVQELYPEACAKHPRFLDEIGHGETRTFTEEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRV PT+ VVYKDGTVTYRRTFRAVHDGYLTVGDK
Sbjct:   75 MVSATFGEKINTDRIVIDKTAREAVQELYPEACAKHPRFLDEIGHGETRTFTEEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRVVPTELVVYKDGTVTYRRTFRAVHDGYLTVGDK 223
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BLAST of mRNA_Ecto-sp13_S_contig10906.809.1 vs. uniprot
Match: A0A835ZLQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLQ1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.710e-23
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:  109 PRFLDEIGHGET-RTFTEEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRVTPTDFVVYKDGTVTYRRTFRAVHDGYLTVGDK 447
            P +     HG    +  EE L++RL VA  F  +A L+LL RG+N++A+DF Y+SP TG L+++ FL L +T D AF +    P  F VYKDG V+YR  +R   DG LT+GDK
Sbjct:  110 PAYTATATHGSAPASLDEESLKRRLMVAKTFARMAPLILLMRGENIIADDFMYFSPCTGTLNKEEFLGLLRTTDRAFPSMASFPQSFTVYKDGLVSYRTAYRTSFDGPLTIGDK 223
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BLAST of mRNA_Ecto-sp13_S_contig10906.809.1 vs. uniprot
Match: W7U8S2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8S2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.810e-8
Identity = 41/111 (36.94%), Postives = 53/111 (47.75%), Query Frame = 1 
Query:  109 PRFLDEIGHGETRTFTEEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRVTPTDFVVYKDGTVTYRRTFRAVHDGYLTVG 441
            P FL  I      T T   L +    A  F ++A  +++SRG NVL+EDF YYS  TG LDR  +L L   ++ A    R   + F V  DGTV Y         G L +G
Sbjct:   87 PGFLSAIRPNSKSTDTGRALIR----AKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIG 193
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BLAST of mRNA_Ecto-sp13_S_contig10906.809.1 vs. uniprot
Match: A0A4D9DH59_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DH59_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.490e-6
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  205 LANLVLLSRGKNVLAEDFKYYSPGTGRLDRDSFLRLTKTLDVAFSTFRVTPTDFVVYKDGTVTYRRTFRAVHDGYLTVG 441
            +A  +++SRG NVL+EDF YYS  TG LDR  +L L   ++ A    R   + F V  DGTV Y         G L +G
Sbjct:    1 MAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIG 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10906.809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KAS4_9PHAE1.770e-9697.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZLQ1_9STRA2.710e-2345.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U8S2_9STRA3.810e-836.94Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9DH59_9STRA2.490e-640.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10906contigEcto-sp13_S_contig10906:2478..5385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size447
Hectar predicted targeting categoryother localisation
Exons5
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462562.6849015-CDS-Ecto-sp13_S_contig10906:2477..25981681462562.6849015-CDS-Ecto-sp13_S_contig10906:2477..2598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10906 2478..2598 +
1681462562.694126-CDS-Ecto-sp13_S_contig10906:3509..35711681462562.694126-CDS-Ecto-sp13_S_contig10906:3509..3571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10906 3510..3571 +
1681462562.7149901-CDS-Ecto-sp13_S_contig10906:4201..43171681462562.7149901-CDS-Ecto-sp13_S_contig10906:4201..4317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10906 4202..4317 +
1681462562.7264075-CDS-Ecto-sp13_S_contig10906:4681..47511681462562.7264075-CDS-Ecto-sp13_S_contig10906:4681..4751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10906 4682..4751 +
1681462562.741011-CDS-Ecto-sp13_S_contig10906:5307..53851681462562.741011-CDS-Ecto-sp13_S_contig10906:5307..5385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10906 5308..5385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10906.809.1prot_Ecto-sp13_S_contig10906.809.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10906 2478..5385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10906.809.1

>prot_Ecto-sp13_S_contig10906.809.1 ID=prot_Ecto-sp13_S_contig10906.809.1|Name=mRNA_Ecto-sp13_S_contig10906.809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MVSATFGEKINTDRIVMDKTAREAVQELYPEACAKHPRFLDEIGHGETRT
FTEEELRKRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRDS
FLRLTKTLDVAFSTFRVTPTDFVVYKDGTVTYRRTFRAVHDGYLTVGDK
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mRNA from alignment at Ecto-sp13_S_contig10906:2478..5385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10906.809.1 ID=mRNA_Ecto-sp13_S_contig10906.809.1|Name=mRNA_Ecto-sp13_S_contig10906.809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10906:2478..5385+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCGGCCACGTTTGGGGAGAAGATAAACACCGACCGCATCGTGAT
GGACAAGACGGCGAGGGAGGCCGTGCAGGAGCTGTACCCGGAGGCTTGCG
CGAAGCACCCTAGGTTCCTTGGTGAGGGTTTGAGGTTTAGGGCAGGGAGG
GATGATGCATGTTTCTGTTGGATACTGTAGCGACCAGCTTGCAGTTCAAC
TTATTGCGTGTGTTTCACGTGTTCACCCGTCCCTACCCTACTAAGATCGG
CCGGTAGTGTCTGTGGCCATTCCTTGACTCATCAACGGTCTCTTGTGAAG
AGGACTGCAGATATAAGTTGAAGCTCGTGCGGTGGGGCTATGCTCCTCAC
CCTGCAAGGCACCCACATACACGCGTCTCTCTTCTTCTTTATGCGGAAGC
GTACGTAAGATAGAACCCCTCCCGCGCCGATCGCAATGGTACAAGAGCGA
CTACGGTATCTGCTTGTTTTTTGGAACGATCGGGTCGAGACACGTTTGAT
GTTTGCGCAGCTATGGGTTCTGTTTGGCTTTGAGGCCCTTCCGTATTTTG
GCCCAGTCGCCAAACGGGAACTCTAGGCGCTCCTGGCGACAAAATGCCCG
AGGGGCACTTGGAAGATCGACGCGTGGGCGTGCGCAGTTGTAATTGGGAT
CACCGTTTAACCGCCAAGTTTTGCCTGATCGTATTATGTTCATTTGATGT
CCTCCTCGACGAAAGCCGCCCTTTATTGTTGTTGGCACTCTGCAGGTACC
ACCATTGAACAGACTATGACAACTCAGCAGACAGTAGTTGGGAATGTTAT
CTTTGATGTTGAGTTACGCCAGATGATGGAAGCCGGAGAAACCAAGGATC
TTTCGATCGCCTGCTCATGCTGCCTCCCATGCGTTTTTTACTTGATTTTT
CTCTCTCTCCCTCTTTCGCTCTCTCTTTCTCTTTCTCTCTCTTTCTTTCT
TTCTCCTTCCCTCTCTTTCTCTCGCTCTCGCTGCAATCTCCGTCTCTCTC
TTTACGTAATTTGTACGACCGTTTTTTTGCAGATGAGATCGGACACGGCG
AGACGAGGACGTTCACCGAAGAGGAGCTCAGGAAGCGACTCGAGGTATGA
TACAGCCCTATCTGTTTACAATGGGATGGTCTGTCCGTCCGTTTGCGCAT
CTCTTCCCTTTTGTGAGTGGGTGGGGGTTCTGCTCTGCTCTGCCCGTGCG
TAAAGACATCGTTTTGTCGGGAAGAATGCTTTCGAGCAAGGCGCTAGCTG
GTAAATGCGGGGTAGTCTGGCAGCCACTGTTGTTGTCGAAATCAAGCCTT
TCGACGGCAAATCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCCCCCTCCATTCGTGTTCACGGCGTTCACTT
CCGCAATCGTCTATCAGCCTATCAGCACCACTGCGGAGCACCCGAGTCCC
CGAAGAGAAAACGAGGCGCCTAGGTTTTTCCAAGTCAATGCCCCGTGAAC
AATGCTTTAATGGAAGGCTGTATTCATTGAGTGTGGGTGTCATTGGTCTC
GATGAGGAACTGCCATCGTCCTCGATAGACACAAAAATGACGTCATCCTT
GCTGGGACCCCGTGGAATTTGAAGTGTTTTGGGTGTCTTGTCCCGCCGTC
GTAAGGCCGACGCCGAAGTGTTCTCGGAGTCACACACGCAACTCTCTCTC
TCCCTCACCCGGTGACACGCAAAGGTGGCCCACGTGTTCGTAAGCCTTGC
CAACCTGGTGCTGCTGTCTCGCGGCAAGAACGTCCTCGCAGAGGACTTCA
AGTACTACTCCCCCGGCACGGGCCGCCTTGACCGCGACAGGTAAGTGTGT
GTGTGTGTGTGTGTGTGCGTTTTCTTAGTATTTGCGTCGACGACGATAAG
GGGCTGACCAATGGCAAGAAATCAGTCTCGTAGCGGGATAGATCTCCACG
TGTGTGTGCGAGTGGGTGTCTTATAAACAGTCTTGGGTTTCCACTTTTTT
CCCCGTGCGCCTTGTTTTCCCCGGTGACGCGTCTCTGTAGCGGTTTTTGA
GGTCGGCTTTTGAGACCTCAAGACACCGAAACAACTTCAATGAAACCCGA
CCGTTTCTGATACCAAGACGACAAGCCTGGTTTTGCCGTTCGTGTTCAGT
GCGCTGTTTCTCTCCCCTCCATTCACCTTGTATCGCGGCACGACGCATGC
GCAGCTTTCTCCGGCTTACCAAGACTCTGGACGTGGCTTTCTCAACCTTC
CGGGTCACGCCTACCGACTTTGTGGTAAGGTTTTGATGGTCGCGTTGGTC
GCGGTTTTCTTGCTTTGTTTCTTTTGGCGGCGCCTTACCAGGCGGCGTCG
GCAGCTGTCTTCAAATCGAAAAAATCATGTCGGGTCGTCTGCACAGCAGC
GGTACTTTCACGTTTGTTTCGGTCCGTGAGCGACGATCGTGTCCGTGTGA
GGGTTTGGGGGCACTACTGTGGGGTATCGTTGTCGTGCCGTCGTGGCTGT
TCAGGTGCAGGGTAGATTGATTGGTTTTGATTTTTTCCACCGAAGGGCAG
GACGCCAGGCAGTCAACGCAACGCCGTCACTGTGTGCGTCGCCGAGAACA
ATTATTCCTGTCCTGGGGCATGCTTTCAGCAACAGGACGGCAGTCAAACA
AGGCAACGGTGTCACCGCGTGTTTCTTCTGTCATGTGGCATCGTTCAACC
GCAGCCGTTTCAGTTTTTGGAGAACACTCGCGCTCGCTTGGAGTCAAACA
CAGGTGACGGCCCCAAGGCCGTGTTGCCCCCCAACGACTGCGAACCGTCC
ATTTCTTGCTGTCACCGCCGTTCGTTGCAGGTTTACAAGGACGGAACCGT
AACCTACCGGCGCACCTTCAGGGCTGTGCACGACGGCTACCTCACCGTTG
GCGACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10906:2478..5385+

>mRNA_Ecto-sp13_S_contig10906.809.1 ID=mRNA_Ecto-sp13_S_contig10906.809.1|Name=mRNA_Ecto-sp13_S_contig10906.809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10906:2478..5385+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCGGCCACGTTTGGGGAGAAGATAAACACCGACCGCATCGTGAT
GGACAAGACGGCGAGGGAGGCCGTGCAGGAGCTGTACCCGGAGGCTTGCG
CGAAGCACCCTAGGTTCCTTGATGAGATCGGACACGGCGAGACGAGGACG
TTCACCGAAGAGGAGCTCAGGAAGCGACTCGAGGTGGCCCACGTGTTCGT
AAGCCTTGCCAACCTGGTGCTGCTGTCTCGCGGCAAGAACGTCCTCGCAG
AGGACTTCAAGTACTACTCCCCCGGCACGGGCCGCCTTGACCGCGACAGC
TTTCTCCGGCTTACCAAGACTCTGGACGTGGCTTTCTCAACCTTCCGGGT
CACGCCTACCGACTTTGTGGTTTACAAGGACGGAACCGTAACCTACCGGC
GCACCTTCAGGGCTGTGCACGACGGCTACCTCACCGTTGGCGACAAG
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