prot_Ecto-sp13_S_contig10902.804.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10902.804.1
Unique Nameprot_Ecto-sp13_S_contig10902.804.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length715
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10902.804.1 vs. uniprot
Match: A0A6H5KS00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS00_9PHAE)

HSP 1 Score: 697 bits (1799), Expect = 2.140e-238
Identity = 465/523 (88.91%), Postives = 477/523 (91.20%), Query Frame = 0 
Query:   47 CCSHASPRRATADATSSGTTPRRAALGRLSAAAEGNDGLGVGDDDDGWDGNLDALDAQLRREAGATQQQRPGQAAAPAAAGFDDGFSALDDLLGVDDSSSASPRAPRSSRSSDVDIDPFAKLDSPVITDSLDDLLSELPAPTAALAPAAGNQAPAGGRPAXXXXXXXXXXXXXXXXXXXXXXAAAPSESWLDDLLDLDNEDLEISSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGPRSAAEVSDRPVTGDAVPSPPSNPADTPAALDDWLNDLLEEDDKN-NNHERTKSSKPAAPFQQEQRLRASLEDDPWDVAAKDGDSSGSFGSXXXXXXXSFG---DVITGSNQLEGWKANTASSADAPRRSNVMGRRARGISRSSSSGSPGGGAAAEGTSRPWDPESSSEEGAGGRASDWGTGDAWTSKGESGVSWWDKDGPGMGMEEATGRRGQGKRDLDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKA 565
            CCSHASP RATADATSSGT PRRAALGRLSAAAEGNDGLGVGDDDDGWDGNLDALDAQLRREAG TQQQ+ GQAAA AAAGFDDGFSALDDLLGV+DS SASPRAPRSSRS+DVDIDPFAKLDSPVITDSLDDLLSELPA     APAAGNQA AG RP  XXXXXXXXXXXXXXXXXXX   AA SESWLDDLLDLDNE+LE+SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     DGPRSAA+V DRPVTGDAVP PPSNPADT AALDDWLNDLLEED+KN NN ERTK SKPAAPFQQEQRLRASLEDDPWD AAK+GDSSGSF  XXXXXXX      DV+TGSNQLEGWKANT SSADAPRRSNVMGRRARG   SS+SGSPGGGAAAEGTSRPWDPES SEEGAGGR+SDWGTGDAW SKGESGVSWWDKDGPGMGMEE TGRRGQGKR+LDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKA
Sbjct:   49 CCSHASPPRATADATSSGTIPRRAALGRLSAAAEGNDGLGVGDDDDGWDGNLDALDAQLRREAGPTQQQQQGQAAALAAAGFDDGFSALDDLLGVEDSPSASPRAPRSSRSNDVDIDPFAKLDSPVITDSLDDLLSELPA-----APAAGNQAAAGRRPTAXXXXXXXXXXXXXXXXXXXSGTAAVSESWLDDLLDLDNENLEVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----DGPRSAAKVPDRPVTGDAVPIPPSNPADTSAALDDWLNDLLEEDNKNKNNQERTKLSKPAAPFQQEQRLRASLEDDPWDFAAKEGDSSGSFXXXXXXXXXXXXXXXDVVTGSNQLEGWKANTVSSADAPRRSNVMGRRARGTGSSSTSGSPGGGAAAEGTSRPWDPESGSEEGAGGRSSDWGTGDAWKSKGESGVSWWDKDGPGMGMEETTGRRGQGKRELDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKA 561
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BLAST of mRNA_Ecto-sp13_S_contig10902.804.1 vs. uniprot
Match: D8LU53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU53_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 3.450e-72
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0 
Query:  424 MGRRARGISRSS-SSGSPGGGAAAEGTSRPWDPESSSEEGAGGRASDWGTGDAWTSKGESGVSWWDKDGPGMGMEEATGRRGQGKRDLDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKA 565
            MGRRARG   SS SSGSPGGGAAAEGTSRPWDPES SE+GAGGR+SDWGTGDAWTSKGESGVSWWDKDGPGMGMEEATGRRGQGKR+LDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKA
Sbjct:    1 MGRRARGTGSSSGSSGSPGGGAAAEGTSRPWDPESRSEQGAGGRSSDWGTGDAWTSKGESGVSWWDKDGPGMGMEEATGRRGQGKRELDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKA 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10902.804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS00_9PHAE2.140e-23888.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU53_ECTSI3.450e-7294.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 536..687
e-value: 1.4E-10
score: 40.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 553..586
e-value: 9.5E-7
score: 26.6
coord: 660..692
e-value: 2.9E-8
score: 31.4
coord: 624..657
e-value: 1.1E-5
score: 23.3
coord: 588..622
e-value: 3.6E-7
score: 27.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 586..621
score: 10.731
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 622..656
score: 10.972
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 657..691
score: 12.321
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 551..585
score: 11.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 692..715
score: 6.807
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 637..715
e-value: 3.8E-19
score: 71.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 511..618
e-value: 3.9E-23
score: 83.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 547..714
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..715
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.757

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10902contigEcto-sp13_S_contig10902:920..5642 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10902.804.1mRNA_Ecto-sp13_S_contig10902.804.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10902 876..5642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10902.804.1 ID=prot_Ecto-sp13_S_contig10902.804.1|Name=mRNA_Ecto-sp13_S_contig10902.804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=715bp
MTLWRLAASSLLLASANSFVPQPASTPQQVPSRAAAAAAAATTRSGCCSH
ASPRRATADATSSGTTPRRAALGRLSAAAEGNDGLGVGDDDDGWDGNLDA
LDAQLRREAGATQQQRPGQAAAPAAAGFDDGFSALDDLLGVDDSSSASPR
APRSSRSSDVDIDPFAKLDSPVITDSLDDLLSELPAPTAALAPAAGNQAP
AGGRPAAAATGAARTSTPPAPSSSSASGAAAPSESWLDDLLDLDNEDLEI
SSSSGGKAAAAAAAAAAAAGPSSASGILESLIDDVTGGEGGGGDGPRSAA
EVSDRPVTGDAVPSPPSNPADTPAALDDWLNDLLEEDDKNNNHERTKSSK
PAAPFQQEQRLRASLEDDPWDVAAKDGDSSGSFGSGSGSGSGSFGDVITG
SNQLEGWKANTASSADAPRRSNVMGRRARGISRSSSSGSPGGGAAAEGTS
RPWDPESSSEEGAGGRASDWGTGDAWTSKGESGVSWWDKDGPGMGMEEAT
GRRGQGKRDLDPVEEAQRACAADLKKLGQRGQWEDATRALVGARVRGVPV
NVYMYNSAISAVSKAGRWKEAMSMMKQMEKDGIAFDEFTYSSVIVACGRG
GQPRKALELLDEMVKVHGIAPDMICYGAAIQACGDAGLTEEALSLMEKMS
REGLLPDKTAYNSAIIACGEKGQWEKALDLLGEMRSNGLRPDQNSYRFAM
QACSTGGRWERALQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf