mRNA_Ecto-sp13_S_contig10863.772.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10863.772.1
Unique Name	mRNA_Ecto-sp13_S_contig10863.772.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10863.772.1 vs. uniprot
Match: D8LDZ6_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ6_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 9.490e-120
Identity = 187/192 (97.40%), Postives = 190/192 (98.96%), Query Frame = 1

Query:   10 ASTGLPGRVQLSKSAFESLSPEKQSACEIRRGVAMKGKGLIDTHLASFDPDGLGQRLWRNFRRFEKMTKVYDPNFQHKGGGTKKGQDQGVFSQEGKIHMIRVKRLKFTLKGSNYEDSQNTALGDELEKEYQHQYNASHLQHFQIFLLVAWVCVCASLYLDFYRSPSQEATRARVGIRVSVCLLLLIVLLSTR 585
            ASTGLPGRVQLSKSAFESLSPEKQSACE+RRGVAMKGKGLIDTHLASFDPDGLGQRLWRNFRRFEKMTKVYDPNFQHKGGGTKKGQDQGVFSQEGKIHMIRVKRLKFTLKGSNYEDSQNTALGDELEKEYQHQYNASHLQHFQIFLLVAWVCVCAS+YLDFYRSPS E TRARVGIRVSVCLLLL+VLLSTR
Sbjct:  429 ASTGLPGRVQLSKSAFESLSPEKQSACELRRGVAMKGKGLIDTHLASFDPDGLGQRLWRNFRRFEKMTKVYDPNFQHKGGGTKKGQDQGVFSQEGKIHMIRVKRLKFTLKGSNYEDSQNTALGDELEKEYQHQYNASHLQHFQIFLLVAWVCVCASIYLDFYRSPS-EVTRARVGIRVSVCLLLLVVLLSTR 619

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10863.772.1 vs. uniprot
Match: A0A835Z2D8_9STRA (Adenylate and guanylate cyclase catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.190e-11
Identity = 52/193 (26.94%), Postives = 90/193 (46.63%), Query Frame = 1

Query:   13 STGLPGRVQLSKSAFESLSPEKQSACEIRRGVAMKGKGLIDTHLASFDPDGLGQRLWRNFRRFEKMTKVYDPNFQHKGGGTKKGQDQGVFSQEGKIHMIRVKRLKFTLKGSNYEDSQNTALGDELEKEYQHQYNASHLQHFQIFLLVAWVCVCASLYLDFYRSPSQEATRAR---VGIRVSVCLLLLIVLLST 582
            STG   R+QLS SA+ SL+   Q  C  R  V +KGKG+++T+    D D L  R +  FR+F      YDP+ ++ G                 + ++  ++ K        ED    +  + + ++Y   +N+S   H Q  LL+  V  CAS+Y +F+      +  A+   +G+R    ++  +VL ++
Sbjct:  591 STGAKNRIQLSASAYNSLTQAYQERCTARGSVQVKGKGIMNTYWLDCDEDELNAR-YAEFRQFRYAAMQYDPDLKNAG-----------------LDLLNNQQDK-------KEDEFVASTVENVRRDYNTLHNSSRRPHVQRVLLLVLVATCASMYAEFFGEGDDLSVTAKKVWMGLRFGAFVMAAVVLAAS 758

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10863.772.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10863.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LDZ6_ECTSI	9.490e-120	97.40	Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta...	[more]
A0A835Z2D8_9STRA	4.190e-11	26.94	Adenylate and guanylate cyclase catalytic domain-c...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10863	contig	Ecto-sp13_S_contig10863:1861..3838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	379.0
Seed ortholog evalue	1.3e-102
Seed eggNOG ortholog	2880.D8LDZ6
Model size	586
KEGG rclass	RC00295
KEGG ko	ko:K01530,ko:K01769,ko:K11858
KEGG Reaction	R00434
KEGG Pathway	ko00230,map00230
Hectar predicted targeting category	other localisation
GOs	GO:0000287,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004016,GO:0004383,GO:0004888,GO:0005034,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006182,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007189,GO:0008074,GO:0008150,GO:0008152,GO:0008179,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009268,GO:0009410,GO:0009628,GO:0009653,GO:0009847,GO:0009893,GO:0009975,GO:0009987,GO:0010033,GO:0010243,GO:0010447,GO:0010562,GO:0010604,GO:0014070,GO:0014074,GO:0016020,GO:0016021,GO:0016829,GO:0016849,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0030104,GO:0030145,GO:0030154,GO:0030425,GO:0030435,GO:0031000,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031683,GO:0032268,GO:0032270,GO:0032502,GO:0032991,GO:0033554,GO:0033674,GO:0033993,GO:0034641,GO:0034654,GO:0035556,GO:0035690,GO:0036270,GO:0036477,GO:0038023,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043167,GO:0043169,GO:0043279,GO:0043549,GO:0043934,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044445,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045121,GO:0045859,GO:0045860,GO:0045937,GO:0046058,GO:0046068,GO:0046390,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0052652,GO:0055086,GO:0060089,GO:0060255,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071310,GO:0071396,GO:0071407,GO:0071470,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0098589,GO:0098805,GO:0098857,GO:0104004,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901698,GO:1901700,GO:1901701,GO:1904321,GO:1904322,GO:1904359,GO:1904360,GO:2000479,GO:2000481
Exons	4
EggNOG free text desc.	guanylate cyclase activity
EggNOG OGs	COG2114@1,KOG1023@2759,KOG4171@2759
EC	3.4.19.12,3.6.3.1,4.6.1.2
Cds size	585
COG Functional cat.	T
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01002,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462559.8223717-CDS-Ecto-sp13_S_contig10863:1860..2076	1681462559.8223717-CDS-Ecto-sp13_S_contig10863:1860..2076	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10863 1861..2076 +
1681462559.8362708-CDS-Ecto-sp13_S_contig10863:2635..2798	1681462559.8362708-CDS-Ecto-sp13_S_contig10863:2635..2798	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10863 2636..2798 +
1681462559.8476174-CDS-Ecto-sp13_S_contig10863:3111..3170	1681462559.8476174-CDS-Ecto-sp13_S_contig10863:3111..3170	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10863 3112..3170 +
1681462559.856895-CDS-Ecto-sp13_S_contig10863:3691..3838	1681462559.856895-CDS-Ecto-sp13_S_contig10863:3691..3838	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10863 3692..3838 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10863.772.1	prot_Ecto-sp13_S_contig10863.772.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10863 1861..3838 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10863:1861..3838+
coding sequence from alignment at Ecto-sp13_S_contig10863:1861..3838+

protein sequence of mRNA_Ecto-sp13_S_contig10863.772.1

>prot_Ecto-sp13_S_contig10863.772.1 ID=prot_Ecto-sp13_S_contig10863.772.1|Name=mRNA_Ecto-sp13_S_contig10863.772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MCAASTGLPGRVQLSKSAFESLSPEKQSACEIRRGVAMKGKGLIDTHLAS
FDPDGLGQRLWRNFRRFEKMTKVYDPNFQHKGGGTKKGQDQGVFSQEGKI
HMIRVKRLKFTLKGSNYEDSQNTALGDELEKEYQHQYNASHLQHFQIFLL
VAWVCVCASLYLDFYRSPSQEATRARVGIRVSVCLLLLIVLLSTR

mRNA from alignment at Ecto-sp13_S_contig10863:1861..3838+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10863.772.1 ID=mRNA_Ecto-sp13_S_contig10863.772.1|Name=mRNA_Ecto-sp13_S_contig10863.772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10863:1861..3838+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGCAGCTTCGACAGGACTACCGGGCAGAGTGCAGCTGAGCAAATC
TGCGTTTGAGTCCCTCTCCCCCGAAAAGCAGTCGGCTTGCGAGATTCGCA
GAGGCGTGGCCATGAAGGGGAAGGGGTTGATCGACACGCACCTCGCCAGC
TTCGACCCGGACGGGCTCGGGCAGAGGCTTTGGAGGAACTTTCGACGCTT
CGAGAAGATGACAAAGGTATCGAGAGCAGCATGGACCAGGAACTGAGGGT
TCTTGCATACGTATGGCAAGAAACTCTACGCCCGTCGAGATTGAAGAGAG
TAGTTGTAAGGTTATCAGCACTGTTTTGGTATTGTTACGAACATCCAGAC
GCATCACAACCCAATTTGACGTAGAACGGCCACGCGCGTTTAGTCTCTGC
ATATCGGTTGAAATCGGAATACATAGTCCGACGCGACCTAGGCAAAAGAG
TCGTTGGGCGACAGTGGGTACGTCTTGTAGGCTGAACGATTAGTCGCGGT
GTCGGCCAATGAAAATACATGATGTTTGTTGGGCTAGGGGGGTACGGGAG
GTATCCGGCCTTGCGCACGTCGTCCTTGGTGTCCTTGATTCTTCCGACAT
CGTTCGTGCTTCTCGATGGGTATGAGCGAGAAGACTCACCCTAAACTTCC
AACCGATCCGTAGAATATCGTTACGCGTGATGGCGGGTTTCCGCTCTGCG
CTGGAAATGCCCTCTCTTCATTTGCACCCAACGCTTCCTTGCACCTCCAC
GCCCCGTGACATCAATCGGAACTAGGTCTATGACCCCAACTTCCAGCACA
AGGGGGGTGGAACCAAGAAAGGGCAAGACCAGGGTGTGTTTTCCCAAGAA
GGGAAGATTCACATGATCCGGGTAAAAAGGCTCAAGTTCACTCTCAAGGG
GTCCAACTACGAGGACTCGCAGAACACGGCGTTAGGAGGTGAGATTTCCG
TAACTTCAGGGCCGTCGAAGGCGCTGCCAAAAATTTAGCCGGCTTCAACG
TATGTGGGTTGGTCCTTTGTCTTACGAGGGTGATGCAGCGACCTGTATTT
CCTGAGCCCTCGTTGGCTGGTGCTCCCTAGATTACCGAGCGGGGTCATGT
AGGTTGATTTGAAGACCAAAGAATGCAGCATATCCTGAGACTCCCATGGC
ATAGGTCCAATAGCCTAAGCCTTAACCGAGCCCCATAGAAGTCGTGTTCC
CACCCTTTCGCCTTGTCACACGTACATACACCCGGAATGCCTTTTTCGCA
GACGAGCTGGAGAAGGAATATCAGCACCAATATAACGCGAGCCATCTCCA
GCACTTTCAGGTATTTTTGTTCGGGAGTGGAAAGGTCTGGTCCGCAGGAG
ATCGGGGTAGGCATGTGGTGCGCTGGGTAGCATGATGAGACTCCCCATCG
TGTAATTCTGGGCAGCTTGGCAGGGAGAGCACTCTCAGCACCCTGCTCTG
CATGCCGTATTCTCGAGCGAACATTGTGCGAGTACATCACACCCTGGCGG
ACCGATTTCCCAAGGTTTTCCTCTTCGACTATGGAATATGGGTAACGTCG
GTGCCGAAAGTAGTATGGGATATGGCAAGAGCTTAAGGACCATTTTTCAC
AGGGTGTGCTCCCACGAACTCGTTTCTGACTACAGTAGCAACCGCATTTT
CACGATCGCTCTTGATGGCCGTGATACCAGGCGCGATACCAATAACGTTA
GCTGTTCACTACTTGTTTTTCTTCTGTTATGTCAAGGATCCATCTCACGA
CGACCTTTCGACACTCGCTTGTCGCCCCACCGCTCACGTGCACACGCACC
CACATCTCCGTGAAATATGGCGGCTCCACAGATTTTCCTGCTGGTAGCAT
GGGTGTGTGTTTGTGCCTCGTTATATCTGGATTTCTACCGGAGCCCTTCT
CAGGAGGCGACCAGAGCACGAGTGGGCATCCGCGTCTCCGTGTGCCTTCT
CCTGCTGATCGTGCTCTTGTCCACGAGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10863:1861..3838+

>mRNA_Ecto-sp13_S_contig10863.772.1 ID=mRNA_Ecto-sp13_S_contig10863.772.1|Name=mRNA_Ecto-sp13_S_contig10863.772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10863:1861..3838+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGCAGCTTCGACAGGACTACCGGGCAGAGTGCAGCTGAGCAAATC
TGCGTTTGAGTCCCTCTCCCCCGAAAAGCAGTCGGCTTGCGAGATTCGCA
GAGGCGTGGCCATGAAGGGGAAGGGGTTGATCGACACGCACCTCGCCAGC
TTCGACCCGGACGGGCTCGGGCAGAGGCTTTGGAGGAACTTTCGACGCTT
CGAGAAGATGACAAAGGTCTATGACCCCAACTTCCAGCACAAGGGGGGTG
GAACCAAGAAAGGGCAAGACCAGGGTGTGTTTTCCCAAGAAGGGAAGATT
CACATGATCCGGGTAAAAAGGCTCAAGTTCACTCTCAAGGGGTCCAACTA
CGAGGACTCGCAGAACACGGCGTTAGGAGACGAGCTGGAGAAGGAATATC
AGCACCAATATAACGCGAGCCATCTCCAGCACTTTCAGATTTTCCTGCTG
GTAGCATGGGTGTGTGTTTGTGCCTCGTTATATCTGGATTTCTACCGGAG
CCCTTCTCAGGAGGCGACCAGAGCACGAGTGGGCATCCGCGTCTCCGTGT
GCCTTCTCCTGCTGATCGTGCTCTTGTCCACGAGG