mRNA_Ecto-sp13_S_contig10052.76.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10052.76.1
Unique NamemRNA_Ecto-sp13_S_contig10052.76.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 1.050e-174
Identity = 301/315 (95.56%), Postives = 308/315 (97.78%), Query Frame = 1 
Query:    1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSS-RSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 942
            GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSS RS+FRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAAL RSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLEL+GLDLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSF+RPTSTREN GRGLSP QAEASDAGDFALGLMEEMKREGVEPDIITYG
Sbjct:   65 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSSRSSFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYG 379
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 2.250e-164
Identity = 290/314 (92.36%), Postives = 297/314 (94.59%), Query Frame = 1 
Query:    1 GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAIVNGQAFTSRTSSRSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEEMKREGVEPDIITYG 942
            GVAADNACLGHVATACAR QM +TALAMVRGMVSKGHSV RTYNNIMLAIVNGQAFTSRTSSRSNFRR+ALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGP KN +MRAVLEDAKLELQG+DLSAVYSAVVSGYA+DGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRP+KAWNNNRETSSFMRPTST            AEASDAGDFALGLM+EMKREGVEPDIITYG
Sbjct:  147 GVAADNACLGHVATACARGQMLDTALAMVRGMVSKGHSVARTYNNIMLAIVNGQAFTSRTSSRSNFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPNKNVIMRAVLEDAKLELQGVDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFGRPNKAWNNNRETSSFMRPTST------------AEASDAGDFALGLMDEMKREGVEPDIITYG 448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10052.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW0_ECTSI1.050e-17495.56PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVR3_9PHAE2.250e-16492.36PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10052contigEcto-sp13_S_contig10052:332..4327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score522.7
Seed ortholog evalue1.2e-145
Seed eggNOG ortholog2880.D7FXW0
Model size945
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-16_005060.1
Cds size945
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10052.76.1prot_Ecto-sp13_S_contig10052.76.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10052 332..4327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.7418983-CDS-Ecto-sp13_S_contig10052:331..4601681462503.7418983-CDS-Ecto-sp13_S_contig10052:331..460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10052 332..460 -
1681462503.755369-CDS-Ecto-sp13_S_contig10052:1434..16201681462503.755369-CDS-Ecto-sp13_S_contig10052:1434..1620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10052 1435..1620 -
1681462503.7646794-CDS-Ecto-sp13_S_contig10052:2224..23091681462503.7646794-CDS-Ecto-sp13_S_contig10052:2224..2309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10052 2225..2309 -
1681462503.7817152-CDS-Ecto-sp13_S_contig10052:2982..32011681462503.7817152-CDS-Ecto-sp13_S_contig10052:2982..3201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10052 2983..3201 -
1681462503.801008-CDS-Ecto-sp13_S_contig10052:3771..39151681462503.801008-CDS-Ecto-sp13_S_contig10052:3771..3915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10052 3772..3915 -
1681462503.8109825-CDS-Ecto-sp13_S_contig10052:4145..43271681462503.8109825-CDS-Ecto-sp13_S_contig10052:4145..4327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10052 4146..4327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10052.76.1

>prot_Ecto-sp13_S_contig10052.76.1 ID=prot_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp
GVAADNACLGHVATACARAQMFETALAMVRGMVSKGHSVTRTYNNIMLAI
VNGQAFTSRTSSRSNFRRSALSNMECEAAVGLLGEMQACGAHPTVFTYNL
LIAALTRSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMM
RAVLEDAKLELQGLDLSAVYSAVVSGYAMDGSWEDASALVDEMFANDVPR
DEYTYCAAMNACKEAGKWMQAAAFLPRMRADGVPPNTIAYNTAIGACAFF
GRPHKAWNNNRETSSFMRPTSTRENIGRGLSPVQAEASDAGDFALGLMEE
MKREGVEPDIITYG*
back to top

mRNA from alignment at Ecto-sp13_S_contig10052:332..4327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10052.76.1 ID=mRNA_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10052:332..4327- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTCGCGGCGGACAATGCGTGCCTAGGACACGTCGCGACAGCTTGTGC
GAGGGCTCAGATGTTTGAAACAGCGTTGGCCATGGTGCGAGGCATGGTCT
CGAAGGGGCACAGCGTTACCCGCACGTACAATAACATCATGCTCGCGATT
GTCAACGGTCAGGCATTCACGTCTCGAACAAGGTAAGTGCCTTAGGTGGT
CTTCGCAACGCTGAGGTATTCCACACATACACGTTTCGAAAGCTCTATCC
TCTCCAGTAACCACGCCTCCGATTAACGCTTCTCAAGCACATCGCATACC
CTTTATTCAAGCAGATCGGGCATCACTGCTCTGTCTGTTCGTTTTTGCAA
GTCTGAGCCCCCCTGTGGCCCAACCCTCCAATATGCGTGCAATGCTACTC
TGTGCTCAGCAGCAGTCGCTCCAATTTTCGGCGCTCCGCCCTGTCTAACA
TGGAGTGCGAGGCGGCAGTGGGGCTTCTCGGAGAGATGCAGGCGTGCGGC
GCTCACCCGACGGTCTTCACGTACAACTTGCTGATCGCCGCACTCACGAG
ATCTAGGTACGCACCGCCTTGACTTGACTTGACATGTGGCCTTGGTGTCA
GCCGTTCTATATACGGTAAGGTGATTACAGCTGCTGCGCCGCACGTCCTC
GGTCTATTTCGACGCGGAGGCGACGGTTCTGGGTAGCGAATATTCAAAGT
ACTTTTTGGCGGGTCGTATGTGATGTGCTGATCACAACGAGCCTCGTAAG
TTGCCGACAATCCTGTCTCCCGCGGGACGTCTATCTGAGACAGTGCAGAG
ATAAAAACCTGCTCTCAAACCTGCGTGGTTTTTCTGAGTGATCAATCCTT
TAACCTTTCTGAACGGTTTGGGCCGATTTCGCGCCACAGCAGTTGGAATG
TCTGGCCTAATAATAGCGGCCACGCACAACTTGTAGCGTCTAGCGTGGCC
CAGACACGAGACCCGGCAAGTGACGGGGCAACACATGCTACAGTATGCTT
CACATCCCGATACGGGAACGGGAAAGGTCAAATCCGCTGCAGGCGACCCT
CCCGTTCGCAACGCCCGCATTCGACAACCAGCATGAAAAAACAATCCGGC
ACTGCACATGAACCACATCACTGCAGGAGACCACACAGCGAAGTCTTGAA
CCTGCTAGACCAAATGCGCTGCGACGGGATCAAGCCGGATAGCTACACGT
ACGTCGGCGTCGTCAAGGGCATCCAGGGCCCCAAAAAGAATGCAATGATG
AGAGCGGTACTGGAGGACGCCAAGTTGGAGCTCCAGGGGTTGGATTTGTC
GGCGGTGTACAGCGCAGTCGTGTCGGGGTATGCCATGGACGGCAGGTGGG
GTTGCGTTCATGCCACGGTATCGGCCAGCCAGCCGGCCGGCCGGCCGGCC
TGGGTGTTTTGTTGGGGATGTGTTGTGTCCGTTTTCGACGTGAAGAACTG
GTGCGTGTTGGTCTTGGTGCTGTAGTTTGGCGTGGGTGTGGTATCCTCGC
GGTGTGTTTGGATTTGGGGTTTTTTATGAGGACGAGGGCGTCGGTGTGTC
GCTTTTACGGCGAGGAGGGGAGGGGGGCGGGGTACCAGCACTGTCGTCTG
TGGATCCGTTGCGGACGGCGGGCGCGCCCTGTGTACTGTGCGCGGGGCGG
GGGGGGGTACTGCGGTGAGCGCAAGCCCGAACTTCATTTACTTGCCGCGG
GTGATCGGATGTATGAACTCATTCGCCAGTGCCTACCTATGCCAAAGAGT
TGCTGTCTGGCACACATTTTGGAGCCCAAGCCTCGAGGCTTTCGCCGTGC
TGGCTGTCCTTTACTCCACACTGACTGCACTAGACGGCTTCCCTTCGACT
TGTCCCTACCTGTGACAAGCTGTGACAAGCTGTGACATGTTGCTAGAGCG
CTCGGGTCCTTTTTCTCGGTTAACACCCGAATCAATCATGATTATGTTTC
TCACAGAGATGTTTGTTGGCGGTGCTGTCTTGCCTTGCACTGCCCTGCCC
TGCCCTGTCCTGCTGCAGTTGGGAAGATGCTTCCGCGCTGGTGGACGAGA
TGTTTGCAAATGACGTGCCGCGAGACGAGTACACGTACTGCGCTGCCATG
AATGTGAGCTGTCAGTCACGTTAGCTCACGTTAGTCGCACGCCCTGGGGA
CCCTTGCCCTTCCCCACTCTCAATTATGACATGTGATCCCTTTGGATTTC
CCGGCATGGATGTACCTCCTTGCCTTGCATCTCCTTCTCCGTGTCGATTG
GTTCCGTTCCAGCGGCTGACCTCGTTTTCAGTGCGCAATTGGTGCGTGGC
GATGATCAACCAACTAGCCCTCACGGTGTACTGTACTGCATATCCGCCAA
CGTACGTACTCCCTTTCCCTGTTGTTGGAGGAGAATAAGCTGCGACAGGG
GATGGCATTTCAATGGGATTCGACGGCTACACCGTTTGTCCCCTTTTTTT
GTGCGCATTGTTTTACCCTACCCCCGAACTGCCCTCTGTACTTCAGGCAC
GCTCTAGTAATACCGCATCCATCCACCGATACGTCATTTAGTATTCACCC
CTGCTCCAAAGGCGCTCTTAAAGCAGCGGCACAAGACACAAGGAGATTGA
ACGGTGACGGCAACCTTGCGGTGACCTTGTCGACCCTACCTCTCGCATAC
TCCCGTGTGTCCTAACCCGCCTGTGACGTCGCTGCTGCTTTGCGTCCATC
CCGAAAGGCGTGCAAAGAGGCGGGGAAGTGGATGCAGGCGGCGGCGTTCC
TGCCTAGAATGAGGGCAGACGGCGTCCCACCAAACACCATCGCCTACAAC
ACGGCCATCGGGGCGTGCGCGTTCTTTGGAAGGCCGCACAAGGCGTGGAA
CAACAATCGGGAGACGAGCTCCTTCATGCGCCCTACCTCGACGGTGAGAA
TGTCGATTGCGGATGAAGGAGTTTTTATGTTGTGGGTTCGAGACTAGAGG
GTAGAAGCCCTCACACTTTCGAAGCTGTACGCACAACCAGCCCTGCCTGT
GTCTGTCCTCATGTTCCAGCAAACAACAACCTTTCGCCGTTGACACTGCC
GTATCATGGTGGTAGTGTCATGTCCGATGTCGATTTTTTCAGCTCTTCTC
CCTGGAACACGAAGTTATGAAGAATACTGCCAGTACATACCCCAATCACG
TGCTAACCCCGTGTCCCATCTCGTAGTGTGAGGGATGCAATAAGACGCCT
TTGTGTATGGTATGTGCAAACTCATGGCAAAGCATGCACGGTAGCAAAAG
AGTCATTGCATGTTTAACCAGAAGGTATTGACTTGATAGTACTCCGTATG
TATTTTGCCCCGCTCCCAAGACTGGCGTGGATTTGTTGGTTGAATCTTTG
CGCGTTCGTATTACATTCATGGACATCGAACGCGGGAAGGCAACCAACCA
ATCCATGCCAGTCTTGGAGCGGGGCAAAATCAAGCTAACATCCTCTGGTC
TAGTATGCAATGACTCTCAATGGAGGGATTGAATGTGCTCTCGATACCCC
TGACATCCACATCCTTGAGGTGGTCTTCACAGTTGAGGCCTACTACATGA
GTGTACTTCAGTATCATACGGTAGGAACACCCGAAGAAAGCATGCAGTGA
TCGCGAGCGGCGAAAGTGAGAAGAGTTGTCAGAGGGTGGCGTTATCCGCT
GTATCCTCTGTGGGGAAGGGAGGTCGTGAAGACATCCAGTGCAGTACCAA
CAGACCGTGATGATGCCAATGGAAGTAGCACCGATTTTGTGCTGGGGTCG
GATCTTGATGTTGATATATGTACGACATTCGTTTGGCTTTCGAAACCACA
CGACCACCTATGACACTGCAACTCACACAAATGCTCCAACAACGCAACGC
GTGGATCGCCTGCGAAGAGAGAAAATATTGGACGGGGGCTGAGCCCGGTG
CAGGCAGAGGCTAGCGACGCGGGAGACTTTGCATTGGGCTTGATGGAAGA
GATGAAGCGGGAGGGAGTGGAGCCCGACATCATCACGTACGGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10052:332..4327-

>mRNA_Ecto-sp13_S_contig10052.76.1 ID=mRNA_Ecto-sp13_S_contig10052.76.1|Name=mRNA_Ecto-sp13_S_contig10052.76.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10052:332..4327- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTCGCGGCGGACAATGCGTGCCTAGGACACGTCGCGACAGCTTGTGC
GAGGGCTCAGATGTTTGAAACAGCGTTGGCCATGGTGCGAGGCATGGTCT
CGAAGGGGCACAGCGTTACCCGCACGTACAATAACATCATGCTCGCGATT
GTCAACGGTCAGGCATTCACGTCTCGAACAAGCAGTCGCTCCAATTTTCG
GCGCTCCGCCCTGTCTAACATGGAGTGCGAGGCGGCAGTGGGGCTTCTCG
GAGAGATGCAGGCGTGCGGCGCTCACCCGACGGTCTTCACGTACAACTTG
CTGATCGCCGCACTCACGAGATCTAGGAGACCACACAGCGAAGTCTTGAA
CCTGCTAGACCAAATGCGCTGCGACGGGATCAAGCCGGATAGCTACACGT
ACGTCGGCGTCGTCAAGGGCATCCAGGGCCCCAAAAAGAATGCAATGATG
AGAGCGGTACTGGAGGACGCCAAGTTGGAGCTCCAGGGGTTGGATTTGTC
GGCGGTGTACAGCGCAGTCGTGTCGGGGTATGCCATGGACGGCAGTTGGG
AAGATGCTTCCGCGCTGGTGGACGAGATGTTTGCAAATGACGTGCCGCGA
GACGAGTACACGTACTGCGCTGCCATGAATGCGTGCAAAGAGGCGGGGAA
GTGGATGCAGGCGGCGGCGTTCCTGCCTAGAATGAGGGCAGACGGCGTCC
CACCAAACACCATCGCCTACAACACGGCCATCGGGGCGTGCGCGTTCTTT
GGAAGGCCGCACAAGGCGTGGAACAACAATCGGGAGACGAGCTCCTTCAT
GCGCCCTACCTCGACGAGAGAAAATATTGGACGGGGGCTGAGCCCGGTGC
AGGCAGAGGCTAGCGACGCGGGAGACTTTGCATTGGGCTTGATGGAAGAG
ATGAAGCGGGAGGGAGTGGAGCCCGACATCATCACGTACGGGTAA
back to top