mRNA_Ecto-sp13_S_contig10816.732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10816.732.1 vs. uniprot
Match: A0A6H5KGG6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGG6_9PHAE) HSP 1 Score: 857 bits (2213), Expect = 7.680e-300 Identity = 554/664 (83.43%), Postives = 570/664 (85.84%), Query Frame = 1
Query: 7 ASLNTRLTPVSEWTLQSGADGSRERKISGTSSXXXXXXXX-SFCGNTSSIDSSDGEDQRPSDRAAQFGQFGGNRPSGPYSH----------NTFLSGSSSERSSRPAAQSSPSFRSSARSSQSPHRSGLLDRYPRGRHLSPAAVHDRAGAAAARPRSASGSSPLLPSRTEIVRPTPRAQGRASSTPAPXXXXXXXXXXXXXXXXXTSPTASPSNGEQAVLQRVSAPESPRSVFPSAVATLSTPQRMRRKSYAQPATSFSVEDTLLLASSALAASASGTAPATPQRRWEASPSTPRNWPIMTSSASNTPSSRHRHIRQWDSTPRRGVVGAGGPAAGEKHGGEPGRRQSWGERKQTEAEEERHGGGVSGFSGRVPGEGAAARGYVRAKKEQPLGAGVRRAGGGRGRANAPLTGSSPRSGVVLRRSWEERXXXXXXXXXXXXXXXXXXX-REKDDGVARPRGVAGFGVRVSTAGEPXXXXXYGGSXXSTPLSAKPPGCDWDSSVPAAGGLDGRRSSATRAEEEDRWPQDFLEKSPPSEPGSHKTCSTQWSEMESQSQGSGNSYAGSTTSSSAMSAHPAGRRSVHAWSTTTSPRPHAPTIAEAKRPLPASSSPSLAVVVSTGGPRSRPEPCKPREEVSGGDTPNLPTPGALTPGALRARSESAPMIWD 1962
ASLNTRLTPVSEWTLQSGADGSRER+ISGTSSXXXXXXXX SFCGNTSSIDSSDGEDQ PSDR AQ +FG RPSGPYSH +TFLSG SSERS RPAAQ P RSGLLDR+P RHLSPAAVHDRAGAA ARPRSASGSSPLL +RTEIVRPT RAQGRASSTP+P XXXXXXXXXXXXXXXXTSPTASP NGEQAVLQRVSAPESPRS FPSAVATLSTPQRMRRKSYAQ ATSFSVEDTLLLASS LAAS SGTAPATPQRRWEASPSTPRNWPIMTSSA NTPS RHR IRQ DS+PRRGVVGAGGPAA +HGGEPGRRQSWGE+KQTEAEEE HGGGVSGFSGRVPGEGAAARGYVR K+EQPLG GVRRAGGGRGRA+APLT SSP GVVLRRSWE XXXXXXXXXXXXXXXXXXX REKDDGVAR RGVAGF V VSTAGEPXXXXX G CDWDS VPAAGGLDGRRSSATRAEE DRWP+DFLEKSPPSEPGSHKTCSTQWSEM+SQSQGSGNSYAGST SSSAMSAHPAGRRSVH+ STTTSPRPHAPTIAEAKRP PASSSPSLAVVVSTGGP+S PEPC PRE+VSGGDTPNL T LRARSESAPMIWD
Sbjct: 383 ASLNTRLTPVSEWTLQSGADGSRERQISGTSSXXXXXXXXGSFCGNTSSIDSSDGEDQLPSDRVAQLSKFGEKRPSGPYSHRHTPRSHHASSTFLSGRSSERSGRPAAQXXXXXXXXXXXXXXPQRSGLLDRHPGVRHLSPAAVHDRAGAAEARPRSASGSSPLLLTRTEIVRPTSRAQGRASSTPSPRXXXXXXXXXXXXXXXXTSPTASPPNGEQAVLQRVSAPESPRSGFPSAVATLSTPQRMRRKSYAQRATSFSVEDTLLLASSGLAASGSGTAPATPQRRWEASPSTPRNWPIMTSSAGNTPSRRHRRIRQRDSSPRRGVVGAGGPAAANRHGGEPGRRQSWGEQKQTEAEEEIHGGGVSGFSGRVPGEGAAARGYVRTKQEQPLGVGVRRAGGGRGRASAPLTESSPSGGVVLRRSWEXXXXXXXXXXXXXXXXXXXXXXREKDDGVARLRGVAGFDVGVSTAGEPXXXXXXXG-------------CDWDSPVPAAGGLDGRRSSATRAEE-DRWPEDFLEKSPPSEPGSHKTCSTQWSEMDSQSQGSGNSYAGSTNSSSAMSAHPAGRRSVHSRSTTTSPRPHAPTIAEAKRPPPASSSPSLAVVVSTGGPKSGPEPCNPREDVSGGDTPNLLTXXXXXXXXLRARSESAPMIWD 1032
BLAST of mRNA_Ecto-sp13_S_contig10816.732.1 vs. uniprot
Match: D7G9G1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G1_ECTSI) HSP 1 Score: 613 bits (1580), Expect = 3.690e-213 Identity = 360/424 (84.91%), Postives = 371/424 (87.50%), Query Frame = 1
Query: 709 MRRKSYAQPATSFSVEDTLLLASSALAASASGT--APATPQRRWEASPSTPRNWPIMTSSASNTPSSRHRHIRQWDSTPRRGVVGAGGPAAGEKHGGEPGRRQSWGERKQTEAEEERHGGGVSGF---SGRVPGEGAAARGYVRAKKEQPLGAGVRRAGGGRGRANAPLTGSSPRSGVVLRRSWEERXXXXXXXXXXXXXXXXXXX-REKDDGVARPRGVAGFGVRVSTAGEPXXXXXYGGSXXSTPLSAKPPGCDWDSSVPAAGGLDGRRSSATRAEEEDRWPQDFLEKSPPSEPGSHKTCSTQWSEMESQSQGSGNSYAGSTTSSSAMSAHPAGRRSVHAWSTTTSPRPHAPTIAEAKRPLPASSSPSLAVVVSTGGPRSRPEPCKPREEVSGGDTPNLPTPGALTPGALRARSESAPMIWD 1962
MRRKSY QPATSFSVEDTLLLASS L ASASGT APATPQRRWEASPSTPRNWP MTSSASNTPSSRHR IRQWDST RGVVGAGGPAAG+++GGEPGR QSWGERK+TEAEEERHGGGVSGF SGRVPGEGAAAR YV AK EQPLG GVRRAGGGRGRA+APLT SSP SGVVLRRSWEER XXXXXXXX REKD+GVARPRGVA FGV VST GEPXXXXX GGS STPLSAKPPGCDWDS VPAAGGLDGRRS ATRAEEEDRW +DFLEKSPPSEPGSHKTCSTQWSEMESQSQGSGNSYAGSTTSSSAMSAHPAGRRSVH WS+TTSPRPHAPTIAEAKR PASSSPSLAVVVSTGGP+SRPEP KPRE+VSGGDTP+L T LRARSESAPMIWD
Sbjct: 1 MRRKSYTQPATSFSVEDTLLLASSGLTASASGTSPAPATPQRRWEASPSTPRNWPTMTSSASNTPSSRHRRIRQWDSTQLRGVVGAGGPAAGKRYGGEPGRSQSWGERKETEAEEERHGGGVSGFGGWSGRVPGEGAAARVYVGAKLEQPLGVGVRRAGGGRGRASAPLTESSPSSGVVLRRSWEERKFSTKDEXXXXXXXXKRRTSREKDEGVARPRGVASFGVGVSTEGEPXXXXXDGGSPPSTPLSAKPPGCDWDSPVPAAGGLDGRRSRATRAEEEDRWLEDFLEKSPPSEPGSHKTCSTQWSEMESQSQGSGNSYAGSTTSSSAMSAHPAGRRSVHTWSSTTSPRPHAPTIAEAKRHPPASSSPSLAVVVSTGGPKSRPEPWKPREDVSGGDTPSLLTXXXXXXXXLRARSESAPMIWD 424 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10816.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10816.732.1 >prot_Ecto-sp13_S_contig10816.732.1 ID=prot_Ecto-sp13_S_contig10816.732.1|Name=mRNA_Ecto-sp13_S_contig10816.732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=419bp MRRKSYAQPATSFSVEDTLLLASSALAASASGTAPATPQRRWEASPSTPRback to top mRNA from alignment at Ecto-sp13_S_contig10816:2229..5674- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10816.732.1 ID=mRNA_Ecto-sp13_S_contig10816.732.1|Name=mRNA_Ecto-sp13_S_contig10816.732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10816:2229..5674- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10816:2229..5674- >mRNA_Ecto-sp13_S_contig10816.732.1 ID=mRNA_Ecto-sp13_S_contig10816.732.1|Name=mRNA_Ecto-sp13_S_contig10816.732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10816:2229..5674- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |